RNA–Protein interactions for RNA: ENST00000570650.1

VPS53-208, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 2

Gene VPS53, Length 729 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-208ENST00000570650 OR4E1P0C645 316 aa3.78□□□□□ -1.8
VPS53-208ENST00000570650 RNASE4P34096 147 aaKnown RBP3.78□□□□□ -1.8
VPS53-208ENST00000570650 OPCMLQ14982 345 aa3.78□□□□□ -1.8
VPS53-208ENST00000570650 SPANXN5Q5MJ07 72 aa3.78□□□□□ -1.8
VPS53-208ENST00000570650 FAAP20Q6NZ36 180 aa3.78□□□□□ -1.8
VPS53-208ENST00000570650 IZUMO2Q6UXV1 221 aa3.78□□□□□ -1.8
VPS53-208ENST00000570650 PATE2Q6UY27 113 aa3.78□□□□□ -1.8
VPS53-208ENST00000570650 LINC00305Q7Z4B0 112 aa3.78□□□□□ -1.8
VPS53-208ENST00000570650 OR10P1Q8NGE3 313 aa3.78□□□□□ -1.8
VPS53-208ENST00000570650 SAT2Q96F10 170 aaPredicted RBP3.78□□□□□ -1.8
VPS53-208ENST00000570650 FAM19A4Q96LR4 140 aa3.78□□□□□ -1.8
VPS53-208ENST00000570650 VCX3BQ9H321 246 aa3.78□□□□□ -1.8
VPS53-208ENST00000570650 TRAV4A0A0B4J268 109 aa3.77□□□□□ -1.81
VPS53-208ENST00000570650 PIGBOS1A0A0B4J2F0 54 aa3.77□□□□□ -1.81
VPS53-208ENST00000570650 DUXBA0A1W2PPF3 345 aa3.77□□□□□ -1.81
VPS53-208ENST00000570650 RNF222A6NCQ9 220 aa3.77□□□□□ -1.81
VPS53-208ENST00000570650 FAM25AB3EWG3 89 aa3.77□□□□□ -1.81
VPS53-208ENST00000570650 FAM25CB3EWG5 89 aa3.77□□□□□ -1.81
VPS53-208ENST00000570650 FAM25GB3EWG6 89 aa3.77□□□□□ -1.81
VPS53-208ENST00000570650 WRBO00258 174 aa3.77□□□□□ -1.81
VPS53-208ENST00000570650 SYNGR2O43760 224 aa3.77□□□□□ -1.81
VPS53-208ENST00000570650 GPX1P07203 203 aa3.77□□□□□ -1.81
VPS53-208ENST00000570650 PFN1P07737 140 aaKnown RBP3.77□□□□□ -1.81
VPS53-208ENST00000570650 NMBP08949 121 aa3.77□□□□□ -1.81
VPS53-208ENST00000570650 IGLC2P0DOY2 106 aa3.77□□□□□ -1.81
VPS53-208ENST00000570650 ANXA3P12429 323 aa3.77□□□□□ -1.81
VPS53-208ENST00000570650 CRISP2P16562 243 aa3.77□□□□□ -1.81
VPS53-208ENST00000570650 SRPXP78539 464 aa3.77□□□□□ -1.81
VPS53-208ENST00000570650 ERCC8Q13216 396 aa3.77□□□□□ -1.81
VPS53-208ENST00000570650 NEDD8Q15843 81 aa3.77□□□□□ -1.81
VPS53-208ENST00000570650 GUK1Q16774 197 aa3.77□□□□□ -1.81
VPS53-208ENST00000570650 LELP1Q5T871 98 aa3.77□□□□□ -1.81
VPS53-208ENST00000570650 ATP6V0E2Q8NHE4 81 aa3.77□□□□□ -1.81
VPS53-208ENST00000570650 RASL10AQ92737 203 aa3.77□□□□□ -1.81
VPS53-208ENST00000570650 MRPL53Q96EL3 112 aaKnown RBP3.77□□□□□ -1.81
VPS53-208ENST00000570650 LINC00477Q96M19 166 aa3.77□□□□□ -1.81
VPS53-208ENST00000570650 RAB26Q9ULW5 256 aa3.77□□□□□ -1.81
VPS53-208ENST00000570650 RPH3ALQ9UNE2 315 aa3.77□□□□□ -1.81
VPS53-208ENST00000570650 STRAPQ9Y3F4 350 aaKnown RBP3.77□□□□□ -1.81
VPS53-208ENST00000570650 FABP12A6NFH5 140 aa3.76□□□□□ -1.81
VPS53-208ENST00000570650 H3BP45 60 aa3.76□□□□□ -1.81
VPS53-208ENST00000570650 H3BQ15 152 aa3.76□□□□□ -1.81
VPS53-208ENST00000570650 K7EPK0 472 aa3.76□□□□□ -1.81
VPS53-208ENST00000570650 COX7A2P2O60397 106 aa3.76□□□□□ -1.81
VPS53-208ENST00000570650 ZNF253O75346 499 aa3.76□□□□□ -1.81
VPS53-208ENST00000570650 SLC25A6P12236 298 aa3.76□□□□□ -1.81
VPS53-208ENST00000570650 LSM3P62310 102 aaKnown RBP3.76□□□□□ -1.81
VPS53-208ENST00000570650 SSBP1Q04837 148 aaKnown RBP3.76□□□□□ -1.81
VPS53-208ENST00000570650 SLC38A11Q08AI6 406 aa3.76□□□□□ -1.81
VPS53-208ENST00000570650 PRR9Q5T870 116 aa3.76□□□□□ -1.81
VPS53-208ENST00000570650 ZNF546Q86UE3 836 aa3.76□□□□□ -1.81
VPS53-208ENST00000570650 ZFAND2AQ8N6M9 145 aa3.76□□□□□ -1.81
VPS53-208ENST00000570650 HSD17B11Q8NBQ5 300 aa3.76□□□□□ -1.81
VPS53-208ENST00000570650 OR4C5Q8NGB2 326 aa3.76□□□□□ -1.81
VPS53-208ENST00000570650 C15orf40Q8WUR7 153 aa3.76□□□□□ -1.81
VPS53-208ENST00000570650 RMI2Q96E14 147 aa3.76□□□□□ -1.81
VPS53-208ENST00000570650 SCGB3A2Q96PL1 93 aa3.76□□□□□ -1.81
VPS53-208ENST00000570650 PRRT1Q99946 306 aa3.76□□□□□ -1.81
VPS53-208ENST00000570650 SPXQ9BT56 116 aa3.76□□□□□ -1.81
VPS53-208ENST00000570650 SRRQ9GZT4 340 aa3.76□□□□□ -1.81
VPS53-208ENST00000570650 AGPAT4-IT1Q9H0P7 198 aa3.76□□□□□ -1.81
VPS53-208ENST00000570650 DPH3P1Q9H4G8 78 aa3.76□□□□□ -1.81
VPS53-208ENST00000570650 EXTL2Q9UBQ6 330 aa3.76□□□□□ -1.81
VPS53-208ENST00000570650 TRAV8-1A0A0A6YYK1 113 aa3.75□□□□□ -1.81
VPS53-208ENST00000570650 A0A0D9SG52 128 aa3.75□□□□□ -1.81
VPS53-208ENST00000570650 GGTLC3B5MD39 225 aa3.75□□□□□ -1.81
VPS53-208ENST00000570650 FNDC10F2Z333 226 aa3.75□□□□□ -1.81
VPS53-208ENST00000570650 M0R3E3 92 aa3.75□□□□□ -1.81
VPS53-208ENST00000570650 GOSR2O14653 212 aa3.75□□□□□ -1.81
VPS53-208ENST00000570650 AKAIN1P0CW23 69 aa3.75□□□□□ -1.81
VPS53-208ENST00000570650 GATA1P15976 413 aaPredicted RBP3.75□□□□□ -1.81
VPS53-208ENST00000570650 RRAS2P62070 204 aaPredicted RBP3.75□□□□□ -1.81
VPS53-208ENST00000570650 POLR2GP62487 172 aaKnown RBP eCLIP3.75□□□□□ -1.81
VPS53-208ENST00000570650 FAM122CQ6P4D5 195 aa3.75□□□□□ -1.81
VPS53-208ENST00000570650 Q6ZQT7 251 aa3.75□□□□□ -1.81
VPS53-208ENST00000570650 YIPF6Q96EC8 236 aa3.75□□□□□ -1.81
VPS53-208ENST00000570650 PRADC1Q9BSG0 188 aa3.75□□□□□ -1.81
VPS53-208ENST00000570650 GTSF1LQ9H1H1 148 aa3.75□□□□□ -1.81
VPS53-208ENST00000570650 NPVFQ9HCQ7 196 aa3.75□□□□□ -1.81
VPS53-208ENST00000570650 PRELID1Q9Y255 219 aa3.75□□□□□ -1.81
VPS53-208ENST00000570650 IGKV2D-24A0A075B6R9 120 aa3.74□□□□□ -1.81
VPS53-208ENST00000570650 IGHV3-16A0A0C4DH30 117 aa3.74□□□□□ -1.81
VPS53-208ENST00000570650 HIST1H1EP10412 219 aaKnown RBP3.74□□□□□ -1.81
VPS53-208ENST00000570650 MRPS10P82664 201 aaKnown RBP3.74□□□□□ -1.81
VPS53-208ENST00000570650 RHOHQ15669 191 aa3.74□□□□□ -1.81
VPS53-208ENST00000570650 VWC2Q2TAL6 325 aa3.74□□□□□ -1.81
VPS53-208ENST00000570650 C14orf177Q52M58 125 aa3.74□□□□□ -1.81
VPS53-208ENST00000570650 FFAR4Q5NUL3 377 aa3.74□□□□□ -1.81
VPS53-208ENST00000570650 MUC21Q5SSG8 566 aa3.74□□□□□ -1.81
VPS53-208ENST00000570650 TMEM78Q5T7P6 136 aa3.74□□□□□ -1.81
VPS53-208ENST00000570650 C10orf113Q5VZT2 155 aa3.74□□□□□ -1.81
VPS53-208ENST00000570650 DAZ4Q86SG3 579 aaKnown RBP3.74□□□□□ -1.81
VPS53-208ENST00000570650 CLVS1Q8IUQ0 354 aaPredicted RBP3.74□□□□□ -1.81
VPS53-208ENST00000570650 SLC25A29Q8N8R3 303 aa3.74□□□□□ -1.81
VPS53-208ENST00000570650 DAZ3Q9NR90 486 aaKnown RBP3.74□□□□□ -1.81
VPS53-208ENST00000570650 PSENENQ9NZ42 101 aa3.74□□□□□ -1.81
VPS53-208ENST00000570650 CCDC59Q9P031 241 aaKnown RBP3.74□□□□□ -1.81
VPS53-208ENST00000570650 ZNF492Q9P255 531 aa3.74□□□□□ -1.81
VPS53-208ENST00000570650 SCP2D1Q9UJQ7 156 aa3.74□□□□□ -1.81
VPS53-208ENST00000570650 RABL2BQ9UNT1 228 aa3.74□□□□□ -1.81
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms