RNA–Protein interactions for RNA: ENST00000569430.6

CLN3-238, Transcript of CLN3, battenin, humanhuman

APPRIS P1 TSL 5 BASIC

Gene CLN3, Length 3,867 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-238ENST00000569430 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP9.01□□□□□ -0.97
CLN3-238ENST00000569430 ZNF562Q6V9R5 426 aa9.01□□□□□ -0.97
CLN3-238ENST00000569430 KIR2DL4Q99706 377 aa9.01□□□□□ -0.97
CLN3-238ENST00000569430 RAB9AP51151 201 aa9.01□□□□□ -0.97
CLN3-238ENST00000569430 C15orf32Q32M92 178 aa9.01□□□□□ -0.97
CLN3-238ENST00000569430 C14orf178Q8N769 122 aaPredicted RBP9.01□□□□□ -0.97
CLN3-238ENST00000569430 ANAPC13Q9BS18 74 aa9.01□□□□□ -0.97
CLN3-238ENST00000569430 LINC01549A6NIU2 74 aa9.01□□□□□ -0.97
CLN3-238ENST00000569430 SIGLEC15Q6ZMC9 328 aa9.01□□□□□ -0.97
CLN3-238ENST00000569430 CDX4O14627 284 aaPredicted RBP9□□□□□ -0.97
CLN3-238ENST00000569430 RNASE4P34096 147 aaKnown RBP9□□□□□ -0.97
CLN3-238ENST00000569430 CR1LQ2VPA4 569 aa9□□□□□ -0.97
CLN3-238ENST00000569430 CEND1Q8N111 149 aa9□□□□□ -0.97
CLN3-238ENST00000569430 SYT8Q8NBV8 401 aa9□□□□□ -0.97
CLN3-238ENST00000569430 TMEM14CQ9P0S9 112 aa9□□□□□ -0.97
CLN3-238ENST00000569430 CTSZQ9UBR2 303 aa9□□□□□ -0.97
CLN3-238ENST00000569430 IGF2RP11717 2491 aa9□□□□□ -0.97
CLN3-238ENST00000569430 PF4V1P10720 104 aa9□□□□□ -0.97
CLN3-238ENST00000569430 IL17RELQ6ZVW7 336 aa9□□□□□ -0.97
CLN3-238ENST00000569430 DTX2Q86UW9 622 aa9□□□□□ -0.97
CLN3-238ENST00000569430 ADAMTS20P59510 1910 aa9□□□□□ -0.97
CLN3-238ENST00000569430 PTPRQQ9UMZ3 2332 aa9□□□□□ -0.97
CLN3-238ENST00000569430 ASIPP42127 132 aa9□□□□□ -0.97
CLN3-238ENST00000569430 C5orf64Q2M2E5 130 aa9□□□□□ -0.97
CLN3-238ENST00000569430 C12orf74Q32Q52 190 aa9□□□□□ -0.97
CLN3-238ENST00000569430 DLX4Q92988 240 aaPredicted RBP9□□□□□ -0.97
CLN3-238ENST00000569430 DKK4Q9UBT3 224 aa9□□□□□ -0.97
CLN3-238ENST00000569430 PTPN13Q12923 2485 aa8.99□□□□□ -0.97
CLN3-238ENST00000569430 H3BRN7 92 aa8.99□□□□□ -0.97
CLN3-238ENST00000569430 CRXO43186 299 aaPredicted RBP8.99□□□□□ -0.97
CLN3-238ENST00000569430 SNCGO76070 127 aa8.99□□□□□ -0.97
CLN3-238ENST00000569430 TNFRSF14Q92956 283 aa8.99□□□□□ -0.97
CLN3-238ENST00000569430 A8MWV9 139 aa8.99□□□□□ -0.97
CLN3-238ENST00000569430 H7C1H1 209 aa8.99□□□□□ -0.97
CLN3-238ENST00000569430 SIVA1O15304 175 aa8.99□□□□□ -0.97
CLN3-238ENST00000569430 IGHV3-11P01762 117 aa8.99□□□□□ -0.97
CLN3-238ENST00000569430 TEX36Q5VZQ5 186 aa8.99□□□□□ -0.97
CLN3-238ENST00000569430 C2orf91Q6ZV80 131 aa8.99□□□□□ -0.97
CLN3-238ENST00000569430 ATP6V0BQ99437 205 aa8.99□□□□□ -0.97
CLN3-238ENST00000569430 GEMIN7Q9H840 131 aaKnown RBP8.99□□□□□ -0.97
CLN3-238ENST00000569430 F8W1H4 67 aa8.99□□□□□ -0.97
CLN3-238ENST00000569430 CCL21O00585 134 aa8.99□□□□□ -0.97
CLN3-238ENST00000569430 TEX29Q8N6K0 151 aa8.99□□□□□ -0.97
CLN3-238ENST00000569430 PRSS33Q8NF86 280 aa8.99□□□□□ -0.97
CLN3-238ENST00000569430 TRAV2A0A0B4J234 112 aa8.98□□□□□ -0.97
CLN3-238ENST00000569430 IGHV4-39P01824 125 aa8.98□□□□□ -0.97
CLN3-238ENST00000569430 PLNP26678 52 aa8.98□□□□□ -0.97
CLN3-238ENST00000569430 ATP5G2Q06055 141 aa8.98□□□□□ -0.97
CLN3-238ENST00000569430 PDE6HQ13956 83 aa8.98□□□□□ -0.97
CLN3-238ENST00000569430 ZNF56Q15929 161 aa8.98□□□□□ -0.97
CLN3-238ENST00000569430 ORMDL2Q53FV1 153 aa8.98□□□□□ -0.97
CLN3-238ENST00000569430 ABHD17AQ96GS6 310 aa8.98□□□□□ -0.97
CLN3-238ENST00000569430 RAX2Q96IS3 184 aa8.98□□□□□ -0.97
CLN3-238ENST00000569430 ASH1LQ9NR48 2969 aaKnown RBP8.98□□□□□ -0.97
CLN3-238ENST00000569430 FAM215AQ9Y5M1 114 aa8.98□□□□□ -0.97
CLN3-238ENST00000569430 SRD5A1P18405 259 aa8.98□□□□□ -0.97
CLN3-238ENST00000569430 FOXC1Q12948 553 aa8.98□□□□□ -0.97
CLN3-238ENST00000569430 DGAT2L7PQ6IED9 249 aa8.98□□□□□ -0.97
CLN3-238ENST00000569430 SVEP1Q4LDE5 3571 aa8.98□□□□□ -0.97
CLN3-238ENST00000569430 CSMD1Q96PZ7 3565 aa8.98□□□□□ -0.97
CLN3-238ENST00000569430 A0A0G2JNJ9 132 aa8.98□□□□□ -0.97
CLN3-238ENST00000569430 WT1P19544 449 aaPredicted RBP8.98□□□□□ -0.97
CLN3-238ENST00000569430 C1orf122Q6ZSJ8 110 aa8.98□□□□□ -0.97
CLN3-238ENST00000569430 Q71RC1 249 aaPredicted RBP8.98□□□□□ -0.97
CLN3-238ENST00000569430 Q9UFV3 132 aa8.98□□□□□ -0.97
CLN3-238ENST00000569430 K7EM74 188 aa8.97□□□□□ -0.97
CLN3-238ENST00000569430 SLC25A16P16260 332 aa8.97□□□□□ -0.97
CLN3-238ENST00000569430 LY6EQ16553 131 aa8.97□□□□□ -0.97
CLN3-238ENST00000569430 FAM159AQ6UWV7 190 aa8.97□□□□□ -0.97
CLN3-238ENST00000569430 EEF1AKMT3Q96AZ1 226 aa8.97□□□□□ -0.97
CLN3-238ENST00000569430 IGLL5B9A064 214 aa8.97□□□□□ -0.97
CLN3-238ENST00000569430 IGLV2-23P01705 113 aa8.97□□□□□ -0.97
CLN3-238ENST00000569430 NEGR1Q7Z3B1 354 aa8.97□□□□□ -0.97
CLN3-238ENST00000569430 TRGV3P03979 118 aa8.97□□□□□ -0.97
CLN3-238ENST00000569430 ZNF672Q499Z4 452 aaPredicted RBP8.97□□□□□ -0.97
CLN3-238ENST00000569430 KHDC1LQ5JSQ8 128 aa8.97□□□□□ -0.97
CLN3-238ENST00000569430 LINC00311Q8N616 119 aa8.97□□□□□ -0.97
CLN3-238ENST00000569430 SLC50A1Q9BRV3 221 aa8.97□□□□□ -0.97
CLN3-238ENST00000569430 MYO9AB2RTY4 2548 aa8.96□□□□□ -0.97
CLN3-238ENST00000569430 E7EQL1 145 aa8.96□□□□□ -0.97
CLN3-238ENST00000569430 RUSC1-AS1Q66K80 236 aa8.96□□□□□ -0.97
CLN3-238ENST00000569430 Q8N8P6 123 aa8.96□□□□□ -0.97
CLN3-238ENST00000569430 SPRY4Q9C004 299 aa8.96□□□□□ -0.97
CLN3-238ENST00000569430 COL5A1P20908 1838 aaPredicted RBP8.96□□□□□ -0.97
CLN3-238ENST00000569430 LRBAP50851 2863 aa8.96□□□□□ -0.97
CLN3-238ENST00000569430 NCOR2Q9Y618 2525 aa8.96□□□□□ -0.97
CLN3-238ENST00000569430 C3orf36Q3SXR2 165 aa8.96□□□□□ -0.98
CLN3-238ENST00000569430 SRSF8Q9BRL6 282 aaKnown RBP8.96□□□□□ -0.98
CLN3-238ENST00000569430 CHD8Q9HCK8 2581 aa8.96□□□□□ -0.98
CLN3-238ENST00000569430 PCSK5Q92824 1860 aa8.96□□□□□ -0.98
CLN3-238ENST00000569430 K7EIM0 57 aa8.96□□□□□ -0.98
CLN3-238ENST00000569430 HLA-DRB4P13762 266 aa8.96□□□□□ -0.98
CLN3-238ENST00000569430 NUP37Q8NFH4 326 aa8.96□□□□□ -0.98
CLN3-238ENST00000569430 HLA-DRB4X5D2U9 266 aa8.96□□□□□ -0.98
CLN3-238ENST00000569430 IGKV2D-26A0A0A0MRZ7 120 aa8.95□□□□□ -0.98
CLN3-238ENST00000569430 I3L2K1 104 aa8.95□□□□□ -0.98
CLN3-238ENST00000569430 COX6CP09669 75 aa8.95□□□□□ -0.98
CLN3-238ENST00000569430 DYNAPQ8N1N2 210 aa8.95□□□□□ -0.98
CLN3-238ENST00000569430 PRADC1Q9BSG0 188 aa8.95□□□□□ -0.98
CLN3-238ENST00000569430 FAM208BQ5VWN6 2430 aa8.95□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 59 ms