RNA–Protein interactions for RNA: ENST00000568784.6

VPS35-210, Transcript of VPS35, retromer complex component, humanhuman

TSL 1 (best)

Gene VPS35, Length 4,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-210ENST00000568784 PAX2Q02962 417 aa11.28□□□□□ -0.6
VPS35-210ENST00000568784 CFHR4Q92496 578 aa11.28□□□□□ -0.6
VPS35-210ENST00000568784 CCDC144NLQ6NUI1 221 aa11.28□□□□□ -0.6
VPS35-210ENST00000568784 ZNF562Q6V9R5 426 aa11.28□□□□□ -0.6
VPS35-210ENST00000568784 ZNF502Q8TBZ5 544 aa11.28□□□□□ -0.6
VPS35-210ENST00000568784 CSTL1Q9H114 145 aa11.28□□□□□ -0.6
VPS35-210ENST00000568784 NXT2Q9NPJ8 142 aaKnown RBP11.28□□□□□ -0.6
VPS35-210ENST00000568784 WFDC12Q8WWY7 111 aa11.27□□□□□ -0.6
VPS35-210ENST00000568784 C2CD3Q4AC94 2353 aa11.27□□□□□ -0.61
VPS35-210ENST00000568784 TNFRSF13BO14836 293 aaPredicted RBP11.27□□□□□ -0.61
VPS35-210ENST00000568784 PPBPP02775 128 aa11.27□□□□□ -0.61
VPS35-210ENST00000568784 FGF6P10767 208 aa11.27□□□□□ -0.61
VPS35-210ENST00000568784 TMEM219Q86XT9 240 aa11.27□□□□□ -0.61
VPS35-210ENST00000568784 CTSGP08311 255 aa11.27□□□□□ -0.61
VPS35-210ENST00000568784 WI2-2373I1.2A0A1W2PRP0 233 aa11.26□□□□□ -0.61
VPS35-210ENST00000568784 DEFB1P60022 68 aa11.26□□□□□ -0.61
VPS35-210ENST00000568784 Q6ZQT7 251 aa11.26□□□□□ -0.61
VPS35-210ENST00000568784 PIP4P2Q8N4L2 257 aa11.26□□□□□ -0.61
VPS35-210ENST00000568784 UBTD1Q9HAC8 227 aa11.26□□□□□ -0.61
VPS35-210ENST00000568784 IGLV11-55A0A075B6I3 123 aa11.26□□□□□ -0.61
VPS35-210ENST00000568784 EMP1P54849 157 aa11.26□□□□□ -0.61
VPS35-210ENST00000568784 TGFAP01135 160 aa11.26□□□□□ -0.61
VPS35-210ENST00000568784 TEX48A0A1B0GUV7 120 aa11.25□□□□□ -0.61
VPS35-210ENST00000568784 ZNF493Q6ZR52 646 aa11.25□□□□□ -0.61
VPS35-210ENST00000568784 Q8NA96 180 aa11.25□□□□□ -0.61
VPS35-210ENST00000568784 RNF5Q99942 180 aa11.25□□□□□ -0.61
VPS35-210ENST00000568784 ASH1LQ9NR48 2969 aaKnown RBP11.25□□□□□ -0.61
VPS35-210ENST00000568784 TRBV25-1A0A075B6N4 114 aa11.25□□□□□ -0.61
VPS35-210ENST00000568784 LOC107984156A0A0G2JMH3 177 aa11.25□□□□□ -0.61
VPS35-210ENST00000568784 SRSF9Q13242 221 aaKnown RBP eCLIP11.25□□□□□ -0.61
VPS35-210ENST00000568784 ARL17AQ8IVW1 177 aa11.25□□□□□ -0.61
VPS35-210ENST00000568784 CYSLTR1Q9Y271 337 aa11.25□□□□□ -0.61
VPS35-210ENST00000568784 ADAMTSL5Q6ZMM2 481 aa11.25□□□□□ -0.61
VPS35-210ENST00000568784 ZNF479Q96JC4 524 aa11.25□□□□□ -0.61
VPS35-210ENST00000568784 METTL26Q96S19 204 aa11.25□□□□□ -0.61
VPS35-210ENST00000568784 TTC9CQ8N5M4 171 aa11.25□□□□□ -0.61
VPS35-210ENST00000568784 HIVEP3Q5T1R4 2406 aa11.24□□□□□ -0.61
VPS35-210ENST00000568784 F5H697 171 aa11.24□□□□□ -0.61
VPS35-210ENST00000568784 AGPAT4-IT1Q9H0P7 198 aa11.24□□□□□ -0.61
VPS35-210ENST00000568784 OR11H12B2RN74 326 aa11.24□□□□□ -0.61
VPS35-210ENST00000568784 H3BMG7 143 aa11.24□□□□□ -0.61
VPS35-210ENST00000568784 IGHV3-11P01762 117 aa11.24□□□□□ -0.61
VPS35-210ENST00000568784 ODF1Q14990 250 aa11.24□□□□□ -0.61
VPS35-210ENST00000568784 ETDBQ3ZM63 59 aa11.24□□□□□ -0.61
VPS35-210ENST00000568784 OR11H1Q8NG94 326 aa11.24□□□□□ -0.61
VPS35-210ENST00000568784 OR5A1Q8NGJ0 315 aa11.24□□□□□ -0.61
VPS35-210ENST00000568784 OR11H2Q8NH07 326 aa11.24□□□□□ -0.61
VPS35-210ENST00000568784 SCGB3A1Q96QR1 104 aa11.24□□□□□ -0.61
VPS35-210ENST00000568784 VKORC1Q9BQB6 163 aa11.24□□□□□ -0.61
VPS35-210ENST00000568784 ATP6V0E1O15342 81 aa11.24□□□□□ -0.61
VPS35-210ENST00000568784 HOXB4P17483 251 aaPredicted RBP11.23□□□□□ -0.61
VPS35-210ENST00000568784 SRD5A1P18405 259 aa11.23□□□□□ -0.61
VPS35-210ENST00000568784 SMAD5-AS1Q9Y6J3 95 aa11.23□□□□□ -0.61
VPS35-210ENST00000568784 CACNA1AO00555 2505 aa11.23□□□□□ -0.61
VPS35-210ENST00000568784 MRPS12O15235 138 aaKnown RBP11.23□□□□□ -0.61
VPS35-210ENST00000568784 ATP5LO75964 103 aa11.23□□□□□ -0.61
VPS35-210ENST00000568784 NEGR1Q7Z3B1 354 aa11.23□□□□□ -0.61
VPS35-210ENST00000568784 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP11.23□□□□□ -0.61
VPS35-210ENST00000568784 PRTN3P24158 256 aa11.23□□□□□ -0.61
VPS35-210ENST00000568784 LAGE3Q14657 143 aa11.23□□□□□ -0.61
VPS35-210ENST00000568784 SH2D6Q7Z4S9 175 aa11.23□□□□□ -0.61
VPS35-210ENST00000568784 PHLDA3Q9Y5J5 127 aa11.23□□□□□ -0.61
VPS35-210ENST00000568784 C14orf178Q8N769 122 aaPredicted RBP11.22□□□□□ -0.61
VPS35-210ENST00000568784 NPFFR1Q9GZQ6 430 aa11.22□□□□□ -0.61
VPS35-210ENST00000568784 USP9YO00507 2555 aaPredicted RBP11.22□□□□□ -0.61
VPS35-210ENST00000568784 J3QR89 54 aa11.22□□□□□ -0.61
VPS35-210ENST00000568784 APOMO95445 188 aa11.22□□□□□ -0.61
VPS35-210ENST00000568784 TMEM238C9JI98 176 aa11.21□□□□□ -0.61
VPS35-210ENST00000568784 LY6EQ16553 131 aa11.21□□□□□ -0.61
VPS35-210ENST00000568784 SAMD13Q5VXD3 122 aa11.21□□□□□ -0.61
VPS35-210ENST00000568784 C16orf54Q6UWD8 224 aa11.21□□□□□ -0.61
VPS35-210ENST00000568784 SRSF8Q9BRL6 282 aaKnown RBP11.21□□□□□ -0.61
VPS35-210ENST00000568784 IGHV7-81A0A0B4J1V7 117 aa11.21□□□□□ -0.61
VPS35-210ENST00000568784 LINC01548A6NM66 108 aa11.21□□□□□ -0.61
VPS35-210ENST00000568784 WFDC2Q14508 124 aa11.21□□□□□ -0.61
VPS35-210ENST00000568784 RNF185Q96GF1 192 aa11.21□□□□□ -0.61
VPS35-210ENST00000568784 TRBV6-1A0A0K0K1D8 114 aa11.21□□□□□ -0.62
VPS35-210ENST00000568784 A0A1B0GWB2 263 aa11.2□□□□□ -0.62
VPS35-210ENST00000568784 FAM208BQ5VWN6 2430 aa11.2□□□□□ -0.62
VPS35-210ENST00000568784 LY6LH3BQJ8 138 aa11.2□□□□□ -0.62
VPS35-210ENST00000568784 IGKV3-20P01619 116 aa11.2□□□□□ -0.62
VPS35-210ENST00000568784 IGLC6P0CF74 106 aa11.2□□□□□ -0.62
VPS35-210ENST00000568784 ZNF418Q8TF45 676 aaPredicted RBP11.2□□□□□ -0.62
VPS35-210ENST00000568784 IGKV3D-20A0A0C4DH25 116 aa11.19□□□□□ -0.62
VPS35-210ENST00000568784 CD300EQ496F6 205 aaPredicted RBP11.19□□□□□ -0.62
VPS35-210ENST00000568784 TSSC4Q9Y5U2 329 aaPredicted RBP11.19□□□□□ -0.62
VPS35-210ENST00000568784 ACACBO00763 2458 aa11.19□□□□□ -0.62
VPS35-210ENST00000568784 F8W735 103 aaPredicted RBP11.19□□□□□ -0.62
VPS35-210ENST00000568784 IGF1P05019 195 aa11.19□□□□□ -0.62
VPS35-210ENST00000568784 RNASE4P34096 147 aaKnown RBP11.19□□□□□ -0.62
VPS35-210ENST00000568784 MAPKAPK5-AS1Q8N8E1 139 aa11.19□□□□□ -0.62
VPS35-210ENST00000568784 MRPL16Q9NX20 251 aaKnown RBP11.19□□□□□ -0.62
VPS35-210ENST00000568784 C11orf21Q9P2W6 132 aa11.19□□□□□ -0.62
VPS35-210ENST00000568784 SRSF1Q07955 248 aaKnown RBP eCLIP11.19□□□□□ -0.62
VPS35-210ENST00000568784 Q8N8P6 123 aa11.19□□□□□ -0.62
VPS35-210ENST00000568784 RAXQ9Y2V3 346 aa11.19□□□□□ -0.62
VPS35-210ENST00000568784 G3V4G9 280 aa11.19□□□□□ -0.62
VPS35-210ENST00000568784 FAM74A4Q5TZK3 123 aa11.19□□□□□ -0.62
VPS35-210ENST00000568784 C8orf86Q6ZUL3 223 aa11.19□□□□□ -0.62
VPS35-210ENST00000568784 U3KQK5 164 aa11.19□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms