RNA–Protein interactions for RNA: ENST00000568422.6

CLN3-231, Transcript of CLN3, battenin, human

TSL 5

Gene CLN3, Length 1,168 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-231	ENST00000568422	C17orf112	F2Z3M2	114 aa		11.54	□□□□□ -0.56
CLN3-231	ENST00000568422	EREG	O14944	169 aa		11.54	□□□□□ -0.56
CLN3-231	ENST00000568422	NXPH4	O95158	308 aa		11.54	□□□□□ -0.56
CLN3-231	ENST00000568422	CRYBA4	P53673	196 aa		11.54	□□□□□ -0.56
CLN3-231	ENST00000568422	CYCS	P99999	105 aa	Known RBP	11.54	□□□□□ -0.56
CLN3-231	ENST00000568422	S100Z	Q8WXG8	99 aa		11.54	□□□□□ -0.56
CLN3-231	ENST00000568422	WDR61	Q9GZS3	305 aa	Known RBP	11.54	□□□□□ -0.56
CLN3-231	ENST00000568422	MRPL16	Q9NX20	251 aa	Known RBP	11.54	□□□□□ -0.56
CLN3-231	ENST00000568422	PGPEP1	Q9NXJ5	209 aa		11.54	□□□□□ -0.56
CLN3-231	ENST00000568422		K7EP13	123 aa		11.53	□□□□□ -0.56
CLN3-231	ENST00000568422	IGHV3-53	P01767	116 aa		11.53	□□□□□ -0.56
CLN3-231	ENST00000568422	OR10J4	P0C629	311 aa		11.53	□□□□□ -0.56
CLN3-231	ENST00000568422	FHL2	Q14192	279 aa		11.53	□□□□□ -0.56
CLN3-231	ENST00000568422	ZNF266	Q14584	549 aa		11.53	□□□□□ -0.56
CLN3-231	ENST00000568422	LYPD5	Q6UWN5	251 aa		11.53	□□□□□ -0.56
CLN3-231	ENST00000568422	NFE4	Q86UQ8	179 aa		11.53	□□□□□ -0.56
CLN3-231	ENST00000568422	IQCF2	Q8IXL9	164 aa		11.53	□□□□□ -0.56
CLN3-231	ENST00000568422	OR5AC2	Q9NZP5	309 aa		11.53	□□□□□ -0.56
CLN3-231	ENST00000568422	LENEP	Q9Y5L5	61 aa		11.53	□□□□□ -0.56
CLN3-231	ENST00000568422	DNAH5	Q8TE73	4624 aa		11.53	□□□□□ -0.56
CLN3-231	ENST00000568422	TRAV9-2	A0A087WT02	112 aa		11.52	□□□□□ -0.57
CLN3-231	ENST00000568422	OR7C2	O60412	319 aa		11.52	□□□□□ -0.57
CLN3-231	ENST00000568422	NEGR1	Q7Z3B1	354 aa		11.52	□□□□□ -0.57
CLN3-231	ENST00000568422	ENKUR	Q8TC29	256 aa		11.52	□□□□□ -0.57
CLN3-231	ENST00000568422	PHYHIPL	Q96FC7	376 aa		11.52	□□□□□ -0.57
CLN3-231	ENST00000568422	TRGV4	A0A0C4DH28	118 aa		11.51	□□□□□ -0.57
CLN3-231	ENST00000568422	ERVFC1-1	P60608	527 aa		11.51	□□□□□ -0.57
CLN3-231	ENST00000568422	RAN	P62826	216 aa	Known RBP	11.51	□□□□□ -0.57
CLN3-231	ENST00000568422	LRRC37A5P	Q49AS3	106 aa		11.51	□□□□□ -0.57
CLN3-231	ENST00000568422	CDPF1	Q6NVV7	123 aa		11.51	□□□□□ -0.57
CLN3-231	ENST00000568422		Q6ZQT7	251 aa		11.51	□□□□□ -0.57
CLN3-231	ENST00000568422		Q8TAT8	98 aa		11.51	□□□□□ -0.57
CLN3-231	ENST00000568422	C8orf49	Q96NF6	230 aa		11.51	□□□□□ -0.57
CLN3-231	ENST00000568422	SPX	Q9BT56	116 aa		11.51	□□□□□ -0.57
CLN3-231	ENST00000568422	PRAF2	O60831	178 aa		11.5	□□□□□ -0.57
CLN3-231	ENST00000568422	SIX6	O95475	246 aa		11.5	□□□□□ -0.57
CLN3-231	ENST00000568422		Q6AWC8	147 aa		11.5	□□□□□ -0.57
CLN3-231	ENST00000568422	TMED6	Q8WW62	240 aa		11.5	□□□□□ -0.57
CLN3-231	ENST00000568422	RASL10A	Q92737	203 aa		11.5	□□□□□ -0.57
CLN3-231	ENST00000568422	TRGV11	A0A075B6L2	103 aa		11.49	□□□□□ -0.57
CLN3-231	ENST00000568422		H0YIZ8	118 aa		11.49	□□□□□ -0.57
CLN3-231	ENST00000568422	ORM1	P02763	201 aa		11.49	□□□□□ -0.57
CLN3-231	ENST00000568422	TAS2R45	P59539	299 aa		11.49	□□□□□ -0.57
CLN3-231	ENST00000568422	UBE2L3	P68036	154 aa	Known RBP	11.49	□□□□□ -0.57
CLN3-231	ENST00000568422	KHDC3L	Q587J8	217 aa		11.49	□□□□□ -0.57
CLN3-231	ENST00000568422	FAM159A	Q6UWV7	190 aa		11.49	□□□□□ -0.57
CLN3-231	ENST00000568422	OR10G4	Q8NGN3	311 aa		11.49	□□□□□ -0.57
CLN3-231	ENST00000568422	ATP5S	Q99766	215 aa		11.49	□□□□□ -0.57
CLN3-231	ENST00000568422	MDFIC	Q9P1T7	246 aa		11.49	□□□□□ -0.57
CLN3-231	ENST00000568422	LY96	Q9Y6Y9	160 aa		11.49	□□□□□ -0.57
CLN3-231	ENST00000568422	DIRC3	C9JPN6	131 aa		11.48	□□□□□ -0.57
CLN3-231	ENST00000568422	SRI	P30626	198 aa		11.48	□□□□□ -0.57
CLN3-231	ENST00000568422	MUC21	Q5SSG8	566 aa		11.48	□□□□□ -0.57
CLN3-231	ENST00000568422	PCNP	Q8WW12	178 aa	Known RBP	11.48	□□□□□ -0.57
CLN3-231	ENST00000568422		K7EQD1	137 aa		11.47	□□□□□ -0.57
CLN3-231	ENST00000568422	UPK1B	O75841	260 aa		11.47	□□□□□ -0.57
CLN3-231	ENST00000568422	PET100	P0DJ07	73 aa		11.47	□□□□□ -0.57
CLN3-231	ENST00000568422	TDRG1	Q3Y452	100 aa		11.47	□□□□□ -0.57
CLN3-231	ENST00000568422	FFAR4	Q5NUL3	377 aa		11.47	□□□□□ -0.57
CLN3-231	ENST00000568422	ARL6IP6	Q8N6S5	226 aa		11.47	□□□□□ -0.57
CLN3-231	ENST00000568422	TXNDC17	Q9BRA2	123 aa		11.47	□□□□□ -0.57
CLN3-231	ENST00000568422	IFNA5	P01569	189 aa		11.46	□□□□□ -0.57
CLN3-231	ENST00000568422	EVI2A	P22794	236 aa		11.46	□□□□□ -0.57
CLN3-231	ENST00000568422	IFITM3	Q01628	133 aa		11.46	□□□□□ -0.57
CLN3-231	ENST00000568422	TMEM183B	Q1AE95	376 aa		11.46	□□□□□ -0.57
CLN3-231	ENST00000568422	FAM74A1	Q5RGS3	127 aa		11.46	□□□□□ -0.57
CLN3-231	ENST00000568422	TMEM183A	Q8IXX5	376 aa		11.46	□□□□□ -0.57
CLN3-231	ENST00000568422	SCGB1C1	Q8TD33	95 aa		11.46	□□□□□ -0.57
CLN3-231	ENST00000568422	PPP1R1C	Q8WVI7	109 aa		11.46	□□□□□ -0.57
CLN3-231	ENST00000568422	ZNF479	Q96JC4	524 aa		11.46	□□□□□ -0.57
CLN3-231	ENST00000568422	TRAV4	A0A0B4J268	109 aa		11.45	□□□□□ -0.58
CLN3-231	ENST00000568422		C9JCJ5	164 aa		11.45	□□□□□ -0.58
CLN3-231	ENST00000568422	INMT-MINDY4	F8WBC2	141 aa		11.45	□□□□□ -0.58
CLN3-231	ENST00000568422	GYPE	P15421	78 aa		11.45	□□□□□ -0.58
CLN3-231	ENST00000568422	H2BFS	P57053	126 aa		11.45	□□□□□ -0.58
CLN3-231	ENST00000568422	SH2D6	Q7Z4S9	175 aa		11.45	□□□□□ -0.58
CLN3-231	ENST00000568422	CMTM2	Q8TAZ6	248 aa		11.45	□□□□□ -0.58
CLN3-231	ENST00000568422	OTOR	Q9NRC9	128 aa		11.45	□□□□□ -0.58
CLN3-231	ENST00000568422	MSRB1	Q9NZV6	116 aa		11.45	□□□□□ -0.58
CLN3-231	ENST00000568422	HSPB11	Q9Y547	144 aa		11.45	□□□□□ -0.58
CLN3-231	ENST00000568422	EPM2A	B3EWF7	344 aa		11.44	□□□□□ -0.58
CLN3-231	ENST00000568422	SFTA3	P0C7M3	94 aa		11.44	□□□□□ -0.58
CLN3-231	ENST00000568422	DNAH10OS	P0CZ25	163 aa		11.44	□□□□□ -0.58
CLN3-231	ENST00000568422	HYLS1	Q96M11	299 aa		11.44	□□□□□ -0.58
CLN3-231	ENST00000568422	TNFRSF18	Q9Y5U5	241 aa		11.44	□□□□□ -0.58
CLN3-231	ENST00000568422		A0A087WTM6	91 aa		11.43	□□□□□ -0.58
CLN3-231	ENST00000568422		M0R2P5	195 aa		11.43	□□□□□ -0.58
CLN3-231	ENST00000568422	MPC2	O95563	127 aa		11.43	□□□□□ -0.58
CLN3-231	ENST00000568422	RPL12	P30050	165 aa	Known RBP	11.43	□□□□□ -0.58
CLN3-231	ENST00000568422	PQLC2	Q6ZP29	291 aa		11.43	□□□□□ -0.58
CLN3-231	ENST00000568422	C10orf126	Q8N4M7	172 aa		11.43	□□□□□ -0.58
CLN3-231	ENST00000568422	OR4C5	Q8NGB2	326 aa		11.43	□□□□□ -0.58
CLN3-231	ENST00000568422	MARVELD1	Q9BSK0	173 aa		11.43	□□□□□ -0.58
CLN3-231	ENST00000568422	MBD2	Q9UBB5	411 aa		11.43	□□□□□ -0.58
CLN3-231	ENST00000568422	TRAV21	A0A0B4J279	112 aa		11.42	□□□□□ -0.58
CLN3-231	ENST00000568422	PGP	A6NDG6	321 aa		11.42	□□□□□ -0.58
CLN3-231	ENST00000568422	WFDC10B	Q8IUB3	73 aa		11.42	□□□□□ -0.58
CLN3-231	ENST00000568422	KCNS1	Q96KK3	526 aa		11.42	□□□□□ -0.58
CLN3-231	ENST00000568422	NAGK	Q9UJ70	344 aa		11.42	□□□□□ -0.58
CLN3-231	ENST00000568422	BOLA1	Q9Y3E2	137 aa		11.42	□□□□□ -0.58

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