RNA–Protein interactions for RNA: ENST00000566083.6

CLN3-222, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,409 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-222ENST00000566083 FXYD5Q96DB9 178 aa10.29□□□□□ -0.76
CLN3-222ENST00000566083 OR5AC2Q9NZP5 309 aa10.29□□□□□ -0.76
CLN3-222ENST00000566083 SIVA1O15304 175 aa10.28□□□□□ -0.76
CLN3-222ENST00000566083 IFNA5P01569 189 aa10.28□□□□□ -0.76
CLN3-222ENST00000566083 RANP62826 216 aaKnown RBP10.28□□□□□ -0.76
CLN3-222ENST00000566083 ZNF266Q14584 549 aa10.28□□□□□ -0.76
CLN3-222ENST00000566083 MRPL23Q16540 153 aaKnown RBP10.28□□□□□ -0.76
CLN3-222ENST00000566083 KHDC3LQ587J8 217 aa10.28□□□□□ -0.76
CLN3-222ENST00000566083 FAM74A1Q5RGS3 127 aa10.28□□□□□ -0.76
CLN3-222ENST00000566083 PPP1R1CQ8WVI7 109 aa10.28□□□□□ -0.76
CLN3-222ENST00000566083 TMED6Q8WW62 240 aa10.28□□□□□ -0.76
CLN3-222ENST00000566083 K7EP13 123 aa10.27□□□□□ -0.77
CLN3-222ENST00000566083 UBE2L3P68036 154 aaKnown RBP10.27□□□□□ -0.77
CLN3-222ENST00000566083 SPATA12Q7Z6I5 190 aa10.27□□□□□ -0.77
CLN3-222ENST00000566083 SPXQ9BT56 116 aa10.27□□□□□ -0.77
CLN3-222ENST00000566083 KRTAP1-5Q9BYS1 174 aa10.27□□□□□ -0.77
CLN3-222ENST00000566083 HHLA3Q9XRX5 114 aa10.27□□□□□ -0.77
CLN3-222ENST00000566083 TRAV9-2A0A087WT02 112 aa10.26□□□□□ -0.77
CLN3-222ENST00000566083 H0YIZ8 118 aa10.26□□□□□ -0.77
CLN3-222ENST00000566083 DEFA1P59665 94 aa10.26□□□□□ -0.77
CLN3-222ENST00000566083 DEFA3P59666 94 aa10.26□□□□□ -0.77
CLN3-222ENST00000566083 FFAR4Q5NUL3 377 aa10.26□□□□□ -0.77
CLN3-222ENST00000566083 ARL6IP6Q8N6S5 226 aa10.26□□□□□ -0.77
CLN3-222ENST00000566083 PHYHIPLQ96FC7 376 aa10.26□□□□□ -0.77
CLN3-222ENST00000566083 MARVELD1Q9BSK0 173 aa10.26□□□□□ -0.77
CLN3-222ENST00000566083 TRGV11A0A075B6L2 103 aa10.25□□□□□ -0.77
CLN3-222ENST00000566083 EREGO14944 169 aa10.25□□□□□ -0.77
CLN3-222ENST00000566083 SSNA1O43805 119 aa10.25□□□□□ -0.77
CLN3-222ENST00000566083 Q6AWC8 147 aa10.25□□□□□ -0.77
CLN3-222ENST00000566083 FAM159AQ6UWV7 190 aa10.25□□□□□ -0.77
CLN3-222ENST00000566083 NEGR1Q7Z3B1 354 aa10.25□□□□□ -0.77
CLN3-222ENST00000566083 IQCF2Q8IXL9 164 aa10.25□□□□□ -0.77
CLN3-222ENST00000566083 CMTM2Q8TAZ6 248 aa10.25□□□□□ -0.77
CLN3-222ENST00000566083 HSPB11Q9Y547 144 aa10.25□□□□□ -0.77
CLN3-222ENST00000566083 TRGV4A0A0C4DH28 118 aa10.24□□□□□ -0.77
CLN3-222ENST00000566083 MPC2O95563 127 aa10.24□□□□□ -0.77
CLN3-222ENST00000566083 CRYBA4P53673 196 aa10.24□□□□□ -0.77
CLN3-222ENST00000566083 H2BFSP57053 126 aa10.24□□□□□ -0.77
CLN3-222ENST00000566083 PRR9Q5T870 116 aa10.24□□□□□ -0.77
CLN3-222ENST00000566083 NFE4Q86UQ8 179 aa10.24□□□□□ -0.77
CLN3-222ENST00000566083 RASL10AQ92737 203 aa10.24□□□□□ -0.77
CLN3-222ENST00000566083 OTORQ9NRC9 128 aa10.24□□□□□ -0.77
CLN3-222ENST00000566083 MRPL16Q9NX20 251 aaKnown RBP10.24□□□□□ -0.77
CLN3-222ENST00000566083 TP53TG3Q9ULZ0 132 aa10.24□□□□□ -0.77
CLN3-222ENST00000566083 DIRC3C9JPN6 131 aa10.24□□□□□ -0.77
CLN3-222ENST00000566083 NXPH4O95158 308 aa10.24□□□□□ -0.77
CLN3-222ENST00000566083 ORM1P02763 201 aa10.24□□□□□ -0.77
CLN3-222ENST00000566083 RPL12P30050 165 aaKnown RBP10.24□□□□□ -0.77
CLN3-222ENST00000566083 LINC00315P59091 139 aa10.24□□□□□ -0.77
CLN3-222ENST00000566083 FHL2Q14192 279 aa10.24□□□□□ -0.77
CLN3-222ENST00000566083 PQLC2Q6ZP29 291 aa10.24□□□□□ -0.77
CLN3-222ENST00000566083 MAPKAPK5-AS1Q8N8E1 139 aa10.24□□□□□ -0.77
CLN3-222ENST00000566083 Q8TAT8 98 aa10.24□□□□□ -0.77
CLN3-222ENST00000566083 PCNPQ8WW12 178 aaKnown RBP10.24□□□□□ -0.77
CLN3-222ENST00000566083 A0A1W2PPV4 95 aa10.23□□□□□ -0.77
CLN3-222ENST00000566083 IGHV3-53P01767 116 aa10.23□□□□□ -0.77
CLN3-222ENST00000566083 SRIP30626 198 aa10.23□□□□□ -0.77
CLN3-222ENST00000566083 ACOT6Q3I5F7 207 aaPredicted RBP10.23□□□□□ -0.77
CLN3-222ENST00000566083 TDRG1Q3Y452 100 aa10.23□□□□□ -0.77
CLN3-222ENST00000566083 OR10G4Q8NGN3 311 aa10.23□□□□□ -0.77
CLN3-222ENST00000566083 C8orf49Q96NF6 230 aa10.23□□□□□ -0.77
CLN3-222ENST00000566083 PGPEP1Q9NXJ5 209 aa10.23□□□□□ -0.77
CLN3-222ENST00000566083 MUC21Q5SSG8 566 aa10.22□□□□□ -0.77
CLN3-222ENST00000566083 LYPD5Q6UWN5 251 aa10.22□□□□□ -0.77
CLN3-222ENST00000566083 SH2D6Q7Z4S9 175 aa10.22□□□□□ -0.77
CLN3-222ENST00000566083 BOLA1Q9Y3E2 137 aa10.22□□□□□ -0.77
CLN3-222ENST00000566083 ERVFC1-1P60608 527 aa10.21□□□□□ -0.78
CLN3-222ENST00000566083 TMEM183BQ1AE95 376 aa10.21□□□□□ -0.78
CLN3-222ENST00000566083 RGS21Q2M5E4 152 aa10.21□□□□□ -0.78
CLN3-222ENST00000566083 CDPF1Q6NVV7 123 aa10.21□□□□□ -0.78
CLN3-222ENST00000566083 TMEM183AQ8IXX5 376 aa10.21□□□□□ -0.78
CLN3-222ENST00000566083 Q8N1X5 172 aa10.21□□□□□ -0.78
CLN3-222ENST00000566083 HYLS1Q96M11 299 aa10.21□□□□□ -0.78
CLN3-222ENST00000566083 TXNDC17Q9BRA2 123 aa10.21□□□□□ -0.78
CLN3-222ENST00000566083 MBD2Q9UBB5 411 aa10.21□□□□□ -0.78
CLN3-222ENST00000566083 LY96Q9Y6Y9 160 aa10.21□□□□□ -0.78
CLN3-222ENST00000566083 TRAV21A0A0B4J279 112 aa10.2□□□□□ -0.78
CLN3-222ENST00000566083 SERTM2A0A1B0GWG4 89 aa10.2□□□□□ -0.78
CLN3-222ENST00000566083 PGPA6NDG6 321 aa10.2□□□□□ -0.78
CLN3-222ENST00000566083 C9JCJ5 164 aa10.2□□□□□ -0.78
CLN3-222ENST00000566083 Q6ZQT7 251 aa10.2□□□□□ -0.78
CLN3-222ENST00000566083 KCNS1Q96KK3 526 aa10.2□□□□□ -0.78
CLN3-222ENST00000566083 MDFICQ9P1T7 246 aa10.2□□□□□ -0.78
CLN3-222ENST00000566083 TRAV4A0A0B4J268 109 aa10.19□□□□□ -0.78
CLN3-222ENST00000566083 K7EQD1 137 aa10.19□□□□□ -0.78
CLN3-222ENST00000566083 M0R2P5 195 aa10.19□□□□□ -0.78
CLN3-222ENST00000566083 EVI2AP22794 236 aa10.19□□□□□ -0.78
CLN3-222ENST00000566083 KRTAP10-2P60368 255 aa10.19□□□□□ -0.78
CLN3-222ENST00000566083 Q6ZRN7 208 aaPredicted RBP10.19□□□□□ -0.78
CLN3-222ENST00000566083 C10orf126Q8N4M7 172 aa10.19□□□□□ -0.78
CLN3-222ENST00000566083 NDFIP1Q9BT67 221 aa10.19□□□□□ -0.78
CLN3-222ENST00000566083 SMIM3Q9BZL3 60 aa10.19□□□□□ -0.78
CLN3-222ENST00000566083 CIDEAO60543 219 aa10.18□□□□□ -0.78
CLN3-222ENST00000566083 OR4C5Q8NGB2 326 aa10.18□□□□□ -0.78
CLN3-222ENST00000566083 ZNF479Q96JC4 524 aa10.18□□□□□ -0.78
CLN3-222ENST00000566083 KRTAP4-5Q9BYR2 181 aa10.18□□□□□ -0.78
CLN3-222ENST00000566083 SDF2L1Q9HCN8 221 aa10.18□□□□□ -0.78
CLN3-222ENST00000566083 TREM1Q9NP99 234 aa10.18□□□□□ -0.78
CLN3-222ENST00000566083 NAGKQ9UJ70 344 aa10.18□□□□□ -0.78
CLN3-222ENST00000566083 HSPG2P98160 4391 aa10.18□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms