RNA–Protein interactions for RNA: ENST00000566040.1

CLN3-220, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-220ENST00000566040 LINC01587Q99440 93 aa6.95□□□□□ -1.3
CLN3-220ENST00000566040 TMEM167BQ9NRX6 74 aa6.95□□□□□ -1.3
CLN3-220ENST00000566040 RPH3ALQ9UNE2 315 aa6.95□□□□□ -1.3
CLN3-220ENST00000566040 KANTRA0A1W2PQU2 76 aa6.94□□□□□ -1.3
CLN3-220ENST00000566040 F6UZH7 168 aa6.94□□□□□ -1.3
CLN3-220ENST00000566040 SPART-AS1P0CW21 52 aa6.94□□□□□ -1.3
CLN3-220ENST00000566040 RNASE4P34096 147 aaKnown RBP6.94□□□□□ -1.3
CLN3-220ENST00000566040 ATP5G3P48201 142 aa6.94□□□□□ -1.3
CLN3-220ENST00000566040 NKX2-5P52952 324 aaPredicted RBP6.94□□□□□ -1.3
CLN3-220ENST00000566040 UBE2G2P60604 165 aa6.94□□□□□ -1.3
CLN3-220ENST00000566040 SUMO1P63165 101 aaKnown RBP6.94□□□□□ -1.3
CLN3-220ENST00000566040 CCL20P78556 96 aa6.94□□□□□ -1.3
CLN3-220ENST00000566040 TMEM78Q5T7P6 136 aa6.94□□□□□ -1.3
CLN3-220ENST00000566040 NIPSNAP3BQ9BS92 247 aa6.94□□□□□ -1.3
CLN3-220ENST00000566040 TMEM208Q9BTX3 173 aa6.94□□□□□ -1.3
CLN3-220ENST00000566040 EPDR1Q9UM22 224 aa6.94□□□□□ -1.3
CLN3-220ENST00000566040 LENEPQ9Y5L5 61 aa6.94□□□□□ -1.3
CLN3-220ENST00000566040 TRAV10A0A0B4J240 114 aa6.93□□□□□ -1.3
CLN3-220ENST00000566040 LYRM9A8MSI8 78 aa6.93□□□□□ -1.3
CLN3-220ENST00000566040 TPT1P13693 172 aaKnown RBP6.93□□□□□ -1.3
CLN3-220ENST00000566040 ANXA2RQ3ZCQ2 193 aa6.93□□□□□ -1.3
CLN3-220ENST00000566040 FAM74A1Q5RGS3 127 aa6.93□□□□□ -1.3
CLN3-220ENST00000566040 FAM213BQ8TBF2 198 aa6.93□□□□□ -1.3
CLN3-220ENST00000566040 RXFP4Q8TDU9 374 aa6.93□□□□□ -1.3
CLN3-220ENST00000566040 C16orf74Q96GX8 76 aa6.93□□□□□ -1.3
CLN3-220ENST00000566040 PYGO2Q9BRQ0 406 aa6.93□□□□□ -1.3
CLN3-220ENST00000566040 BOLA1Q9Y3E2 137 aa6.93□□□□□ -1.3
CLN3-220ENST00000566040 KLF12Q9Y4X4 402 aa6.93□□□□□ -1.3
CLN3-220ENST00000566040 IGHV4-4A0A075B6R2 117 aa6.92□□□□□ -1.3
CLN3-220ENST00000566040 DEFB131BA0A096LNP1 70 aa6.92□□□□□ -1.3
CLN3-220ENST00000566040 TRAV34A0A0B4J273 112 aa6.92□□□□□ -1.3
CLN3-220ENST00000566040 UMAD1C9J7I0 102 aa6.92□□□□□ -1.3
CLN3-220ENST00000566040 C11orf94C9JXX5 98 aa6.92□□□□□ -1.3
CLN3-220ENST00000566040 GPX1P07203 203 aa6.92□□□□□ -1.3
CLN3-220ENST00000566040 HTN1P15515 57 aa6.92□□□□□ -1.3
CLN3-220ENST00000566040 HOXA5P20719 270 aa6.92□□□□□ -1.3
CLN3-220ENST00000566040 CSN1S1P47710 185 aa6.92□□□□□ -1.3
CLN3-220ENST00000566040 SULT1A2P50226 295 aa6.92□□□□□ -1.3
CLN3-220ENST00000566040 TDRG1Q3Y452 100 aa6.92□□□□□ -1.3
CLN3-220ENST00000566040 ZNF493Q6ZR52 646 aa6.92□□□□□ -1.3
CLN3-220ENST00000566040 Q6ZTI0 123 aa6.92□□□□□ -1.3
CLN3-220ENST00000566040 Q86TA4 180 aa6.92□□□□□ -1.3
CLN3-220ENST00000566040 CYB561D1Q8N8Q1 229 aa6.92□□□□□ -1.3
CLN3-220ENST00000566040 TMEM75Q8N9X5 138 aa6.92□□□□□ -1.3
CLN3-220ENST00000566040 ATG101Q9BSB4 218 aa6.92□□□□□ -1.3
CLN3-220ENST00000566040 NOP10Q9NPE3 64 aaKnown RBP6.92□□□□□ -1.3
CLN3-220ENST00000566040 GSN-AS1Q9NRJ2 163 aa6.92□□□□□ -1.3
CLN3-220ENST00000566040 MDFICQ9P1T7 246 aa6.92□□□□□ -1.3
CLN3-220ENST00000566040 PSG8Q9UQ74 426 aa6.92□□□□□ -1.3
CLN3-220ENST00000566040 PKD1P98161 4303 aa6.92□□□□□ -1.3
CLN3-220ENST00000566040 IGHV1OR15-1A0A075B7D0 117 aa6.91□□□□□ -1.3
CLN3-220ENST00000566040 TRAV1-1A0A0B4J248 108 aa6.91□□□□□ -1.3
CLN3-220ENST00000566040 A0A1B0GV50 99 aa6.91□□□□□ -1.3
CLN3-220ENST00000566040 PEX7O00628 323 aa6.91□□□□□ -1.3
CLN3-220ENST00000566040 SPINK4O60575 86 aa6.91□□□□□ -1.3
CLN3-220ENST00000566040 PFDN1O60925 122 aa6.91□□□□□ -1.3
CLN3-220ENST00000566040 CRIP1P50238 77 aa6.91□□□□□ -1.3
CLN3-220ENST00000566040 TCL1AP56279 114 aa6.91□□□□□ -1.3
CLN3-220ENST00000566040 FLI1Q01543 452 aaPredicted RBP6.91□□□□□ -1.3
CLN3-220ENST00000566040 DAZ2Q13117 558 aaKnown RBP6.91□□□□□ -1.3
CLN3-220ENST00000566040 MUC21Q5SSG8 566 aa6.91□□□□□ -1.3
CLN3-220ENST00000566040 DPPA3Q6W0C5 159 aa6.91□□□□□ -1.3
CLN3-220ENST00000566040 COX8CQ7Z4L0 72 aa6.91□□□□□ -1.3
CLN3-220ENST00000566040 EIF4E3Q8N5X7 224 aaKnown RBP6.91□□□□□ -1.3
CLN3-220ENST00000566040 C2CD4CQ8TF44 421 aa6.91□□□□□ -1.3
CLN3-220ENST00000566040 ARL2-SNX15V9GYD0 113 aa6.91□□□□□ -1.3
CLN3-220ENST00000566040 IGLL5B9A064 214 aa6.9□□□□□ -1.3
CLN3-220ENST00000566040 PAGE4O60829 102 aa6.9□□□□□ -1.3
CLN3-220ENST00000566040 DAD1P61803 113 aa6.9□□□□□ -1.3
CLN3-220ENST00000566040 IBA57Q5T440 356 aaKnown RBP6.9□□□□□ -1.3
CLN3-220ENST00000566040 TMEM88Q6PEY1 159 aa6.9□□□□□ -1.3
CLN3-220ENST00000566040 SLC51BQ86UW2 128 aa6.9□□□□□ -1.3
CLN3-220ENST00000566040 IQCF2Q8IXL9 164 aa6.9□□□□□ -1.3
CLN3-220ENST00000566040 CMTM2Q8TAZ6 248 aa6.9□□□□□ -1.3
CLN3-220ENST00000566040 SFT2D1Q8WV19 159 aa6.9□□□□□ -1.3
CLN3-220ENST00000566040 TREM1Q9NP99 234 aa6.9□□□□□ -1.3
CLN3-220ENST00000566040 TIMM8BQ9Y5J9 83 aaPredicted RBP6.9□□□□□ -1.3
CLN3-220ENST00000566040 IGHV3-16A0A0C4DH30 117 aa6.89□□□□□ -1.31
CLN3-220ENST00000566040 TRBV6-1A0A0K0K1D8 114 aa6.89□□□□□ -1.31
CLN3-220ENST00000566040 TEX48A0A1B0GUV7 120 aa6.89□□□□□ -1.31
CLN3-220ENST00000566040 SERTM2A0A1B0GWG4 89 aa6.89□□□□□ -1.31
CLN3-220ENST00000566040 SCO2A0A1W2PP80 73 aa6.89□□□□□ -1.31
CLN3-220ENST00000566040 GNRH2O43555 120 aa6.89□□□□□ -1.31
CLN3-220ENST00000566040 TYMSP04818 313 aa6.89□□□□□ -1.31
CLN3-220ENST00000566040 DEFB130BP0DP73 79 aa6.89□□□□□ -1.31
CLN3-220ENST00000566040 DEFB130AP0DP74 79 aa6.89□□□□□ -1.31
CLN3-220ENST00000566040 ZFP69Q49AA0 526 aa6.89□□□□□ -1.31
CLN3-220ENST00000566040 POM121L12Q8N7R1 296 aa6.89□□□□□ -1.31
CLN3-220ENST00000566040 ZC2HC1AQ96GY0 325 aa6.89□□□□□ -1.31
CLN3-220ENST00000566040 C18orf15Q96N68 181 aa6.89□□□□□ -1.31
CLN3-220ENST00000566040 KLK5Q9Y337 293 aaPredicted RBP6.89□□□□□ -1.31
CLN3-220ENST00000566040 DNAH11Q96DT5 4516 aa6.89□□□□□ -1.31
CLN3-220ENST00000566040 IGKV3D-20A0A0C4DH25 116 aa6.88□□□□□ -1.31
CLN3-220ENST00000566040 GAGE12BA1L429 117 aa6.88□□□□□ -1.31
CLN3-220ENST00000566040 CBY3A6NI87 242 aa6.88□□□□□ -1.31
CLN3-220ENST00000566040 GAGE7O76087 117 aa6.88□□□□□ -1.31
CLN3-220ENST00000566040 GCGP01275 180 aa6.88□□□□□ -1.31
CLN3-220ENST00000566040 H2AFB1P0C5Y9 115 aa6.88□□□□□ -1.31
CLN3-220ENST00000566040 GAGE12FP0CL80 117 aa6.88□□□□□ -1.31
CLN3-220ENST00000566040 GAGE12GP0CL81 117 aa6.88□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 64.8 ms