RNA–Protein interactions for RNA: ENST00000565236.1

CLN3-215, Transcript of CLN3, battenin, humanhuman

TSL 3

Gene CLN3, Length 582 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-215ENST00000565236 Q6ZQT7 251 aa15.59■□□□□ 0.09
CLN3-215ENST00000565236 WFDC1Q9HC57 220 aa15.58■□□□□ 0.08
CLN3-215ENST00000565236 TNP2Q05952 138 aa15.57■□□□□ 0.08
CLN3-215ENST00000565236 ACOT6Q3I5F7 207 aaPredicted RBP15.57■□□□□ 0.08
CLN3-215ENST00000565236 VSIG2Q96IQ7 327 aa15.57■□□□□ 0.08
CLN3-215ENST00000565236 HYLS1Q96M11 299 aa15.57■□□□□ 0.08
CLN3-215ENST00000565236 KRTAP17-1Q9BYP8 105 aa15.57■□□□□ 0.08
CLN3-215ENST00000565236 MUC4Q99102 2169 aa15.56■□□□□ 0.08
CLN3-215ENST00000565236 A0A1W2PPV4 95 aa15.56■□□□□ 0.08
CLN3-215ENST00000565236 DIRC3C9JPN6 131 aa15.56■□□□□ 0.08
CLN3-215ENST00000565236 EIF3GO75821 320 aaKnown RBP eCLIP15.56■□□□□ 0.08
CLN3-215ENST00000565236 ZNF266Q14584 549 aa15.56■□□□□ 0.08
CLN3-215ENST00000565236 ZNF415Q09FC8 603 aa15.55■□□□□ 0.08
CLN3-215ENST00000565236 TTC32Q5I0X7 151 aa15.55■□□□□ 0.08
CLN3-215ENST00000565236 FAM74A1Q5RGS3 127 aa15.55■□□□□ 0.08
CLN3-215ENST00000565236 CMTM2Q8TAZ6 248 aa15.55■□□□□ 0.08
CLN3-215ENST00000565236 ST6GAL2Q96JF0 529 aa15.55■□□□□ 0.08
CLN3-215ENST00000565236 UPK3BQ9BT76 320 aa15.55■□□□□ 0.08
CLN3-215ENST00000565236 OTORQ9NRC9 128 aa15.55■□□□□ 0.08
CLN3-215ENST00000565236 MRPL16Q9NX20 251 aaKnown RBP15.55■□□□□ 0.08
CLN3-215ENST00000565236 MRPS16Q9Y3D3 137 aaKnown RBP15.55■□□□□ 0.08
CLN3-215ENST00000565236 LENEPQ9Y5L5 61 aa15.55■□□□□ 0.08
CLN3-215ENST00000565236 ALG5Q9Y673 324 aa15.55■□□□□ 0.08
CLN3-215ENST00000565236 A0A096LPF7 62 aa15.54■□□□□ 0.08
CLN3-215ENST00000565236 PGPA6NDG6 321 aa15.54■□□□□ 0.08
CLN3-215ENST00000565236 MUC21Q5SSG8 566 aa15.54■□□□□ 0.08
CLN3-215ENST00000565236 PQLC2Q6ZP29 291 aa15.54■□□□□ 0.08
CLN3-215ENST00000565236 PAX4O43316 350 aa15.53■□□□□ 0.08
CLN3-215ENST00000565236 IGHV3-53P01767 116 aa15.53■□□□□ 0.08
CLN3-215ENST00000565236 ZNF575Q86XF7 245 aa15.53■□□□□ 0.08
CLN3-215ENST00000565236 RPH3ALQ9UNE2 315 aa15.53■□□□□ 0.08
CLN3-215ENST00000565236 RAB2AP61019 212 aa15.52■□□□□ 0.08
CLN3-215ENST00000565236 SLAQ13239 276 aa15.52■□□□□ 0.08
CLN3-215ENST00000565236 FAM159AQ6UWV7 190 aa15.52■□□□□ 0.08
CLN3-215ENST00000565236 OR10G4Q8NGN3 311 aa15.52■□□□□ 0.08
CLN3-215ENST00000565236 OR10G9Q8NGN4 311 aa15.52■□□□□ 0.08
CLN3-215ENST00000565236 OR10G7Q8NGN6 311 aa15.52■□□□□ 0.08
CLN3-215ENST00000565236 TMED6Q8WW62 240 aa15.52■□□□□ 0.08
CLN3-215ENST00000565236 Q6AWC8 147 aa15.51■□□□□ 0.07
CLN3-215ENST00000565236 MDFICQ9P1T7 246 aa15.51■□□□□ 0.07
CLN3-215ENST00000565236 PRO0255Q9UI72 69 aa15.51■□□□□ 0.07
CLN3-215ENST00000565236 ICOSQ9Y6W8 199 aa15.51■□□□□ 0.07
CLN3-215ENST00000565236 A0A1W2PPQ1 181 aa15.5■□□□□ 0.07
CLN3-215ENST00000565236 HMGB3O15347 200 aaKnown RBP15.5■□□□□ 0.07
CLN3-215ENST00000565236 KRTAP1-5Q9BYS1 174 aa15.5■□□□□ 0.07
CLN3-215ENST00000565236 MED28Q9H204 178 aa15.5■□□□□ 0.07
CLN3-215ENST00000565236 HHLA3Q9XRX5 114 aa15.5■□□□□ 0.07
CLN3-215ENST00000565236 PCLOQ9Y6V0 5065 aa15.49■□□□□ 0.07
CLN3-215ENST00000565236 PTTG1O95997 202 aa15.49■□□□□ 0.07
CLN3-215ENST00000565236 TMEM183BQ1AE95 376 aa15.49■□□□□ 0.07
CLN3-215ENST00000565236 GOLT1AQ6ZVE7 132 aa15.49■□□□□ 0.07
CLN3-215ENST00000565236 TMEM183AQ8IXX5 376 aa15.49■□□□□ 0.07
CLN3-215ENST00000565236 ARL6IP6Q8N6S5 226 aa15.49■□□□□ 0.07
CLN3-215ENST00000565236 SPXQ9BT56 116 aa15.49■□□□□ 0.07
CLN3-215ENST00000565236 TRGV11A0A075B6L2 103 aa15.48■□□□□ 0.07
CLN3-215ENST00000565236 FHL2Q14192 279 aa15.48■□□□□ 0.07
CLN3-215ENST00000565236 HSD17B11Q8NBQ5 300 aa15.48■□□□□ 0.07
CLN3-215ENST00000565236 C8orf49Q96NF6 230 aa15.48■□□□□ 0.07
CLN3-215ENST00000565236 NAGKQ9UJ70 344 aa15.48■□□□□ 0.07
CLN3-215ENST00000565236 C16orf90A8MZG2 172 aa15.47■□□□□ 0.07
CLN3-215ENST00000565236 CRYBA4P53673 196 aa15.47■□□□□ 0.07
CLN3-215ENST00000565236 TRGV4A0A0C4DH28 118 aa15.46■□□□□ 0.07
CLN3-215ENST00000565236 ARL14EPLP0DKL9 152 aa15.46■□□□□ 0.07
CLN3-215ENST00000565236 CDC34P49427 236 aaPredicted RBP15.46■□□□□ 0.07
CLN3-215ENST00000565236 MRPL23Q16540 153 aaKnown RBP15.46■□□□□ 0.07
CLN3-215ENST00000565236 OR2G3Q8NGZ4 309 aa15.46■□□□□ 0.07
CLN3-215ENST00000565236 AQP10Q96PS8 301 aa15.46■□□□□ 0.07
CLN3-215ENST00000565236 TREM1Q9NP99 234 aa15.46■□□□□ 0.07
CLN3-215ENST00000565236 RYR1P21817 5038 aa15.45■□□□□ 0.06
CLN3-215ENST00000565236 SIVA1O15304 175 aa15.45■□□□□ 0.06
CLN3-215ENST00000565236 TDRG1Q3Y452 100 aa15.45■□□□□ 0.06
CLN3-215ENST00000565236 RASL10AQ92737 203 aa15.45■□□□□ 0.06
CLN3-215ENST00000565236 TRAV8-1A0A0A6YYK1 113 aa15.44■□□□□ 0.06
CLN3-215ENST00000565236 TRAV21A0A0B4J279 112 aa15.44■□□□□ 0.06
CLN3-215ENST00000565236 SFTA3P0C7M3 94 aa15.44■□□□□ 0.06
CLN3-215ENST00000565236 BTF3P20290 206 aaKnown RBP15.44■□□□□ 0.06
CLN3-215ENST00000565236 GNG5P63218 68 aa15.44■□□□□ 0.06
CLN3-215ENST00000565236 RAB24Q969Q5 203 aa15.44■□□□□ 0.06
CLN3-215ENST00000565236 PSMG3Q9BT73 122 aaPredicted RBP15.44■□□□□ 0.06
CLN3-215ENST00000565236 GNRH2O43555 120 aa15.43■□□□□ 0.06
CLN3-215ENST00000565236 NXPH4O95158 308 aa15.43■□□□□ 0.06
CLN3-215ENST00000565236 MBP02144 154 aa15.43■□□□□ 0.06
CLN3-215ENST00000565236 STAG3L2P0CL84 134 aa15.43■□□□□ 0.06
CLN3-215ENST00000565236 STAG3L3P0CL85 134 aa15.43■□□□□ 0.06
CLN3-215ENST00000565236 ATP6V0CP27449 155 aa15.43■□□□□ 0.06
CLN3-215ENST00000565236 IQCF2Q8IXL9 164 aa15.43■□□□□ 0.06
CLN3-215ENST00000565236 TVP23CQ96ET8 276 aa15.43■□□□□ 0.06
CLN3-215ENST00000565236 ZNF479Q96JC4 524 aa15.43■□□□□ 0.06
CLN3-215ENST00000565236 F6UZH7 168 aa15.42■□□□□ 0.06
CLN3-215ENST00000565236 SERF2P84101 59 aa15.42■□□□□ 0.06
CLN3-215ENST00000565236 LYPD5Q6UWN5 251 aa15.42■□□□□ 0.06
CLN3-215ENST00000565236 NEGR1Q7Z3B1 354 aa15.42■□□□□ 0.06
CLN3-215ENST00000565236 SERTM2A0A1B0GWG4 89 aa15.41■□□□□ 0.06
CLN3-215ENST00000565236 GCHFRP30047 84 aa15.41■□□□□ 0.06
CLN3-215ENST00000565236 Q5BKY6 102 aa15.41■□□□□ 0.06
CLN3-215ENST00000565236 INO80EQ8NBZ0 244 aaPredicted RBP15.41■□□□□ 0.06
CLN3-215ENST00000565236 KCNS1Q96KK3 526 aa15.41■□□□□ 0.06
CLN3-215ENST00000565236 SGK494Q96LW2 274 aa15.41■□□□□ 0.06
CLN3-215ENST00000565236 NDFIP1Q9BT67 221 aa15.41■□□□□ 0.06
CLN3-215ENST00000565236 SDF2L1Q9HCN8 221 aa15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 43.2 ms