RNA–Protein interactions for RNA: ENST00000564399.1

VPS4A-203, Transcript of vacuolar protein sorting 4 homolog A, humanhuman

TSL 5

Gene VPS4A, Length 471 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4A-203ENST00000564399 RASL10AQ92737 203 aa4.81□□□□□ -1.64
VPS4A-203ENST00000564399 SMIM8Q96KF7 97 aa4.81□□□□□ -1.64
VPS4A-203ENST00000564399 SPXQ9BT56 116 aa4.81□□□□□ -1.64
VPS4A-203ENST00000564399 TRAV8-3A0A0A6YYJ7 113 aa4.8□□□□□ -1.64
VPS4A-203ENST00000564399 ATP6V1G2O95670 118 aa4.8□□□□□ -1.64
VPS4A-203ENST00000564399 SCGB1D2O95969 90 aa4.8□□□□□ -1.64
VPS4A-203ENST00000564399 LORP23490 312 aaPredicted RBP4.8□□□□□ -1.64
VPS4A-203ENST00000564399 FAUP35544 74 aaKnown RBP4.8□□□□□ -1.64
VPS4A-203ENST00000564399 CAMLGP49069 296 aa4.8□□□□□ -1.64
VPS4A-203ENST00000564399 HNRNPA3P51991 378 aaKnown RBP4.8□□□□□ -1.64
VPS4A-203ENST00000564399 PPP1R1AQ13522 171 aa4.8□□□□□ -1.64
VPS4A-203ENST00000564399 RAB31Q13636 194 aa4.8□□□□□ -1.64
VPS4A-203ENST00000564399 LELP1Q5T871 98 aa4.8□□□□□ -1.64
VPS4A-203ENST00000564399 FAM122CQ6P4D5 195 aa4.8□□□□□ -1.64
VPS4A-203ENST00000564399 TMEM14EPQ6UXP3 125 aa4.8□□□□□ -1.64
VPS4A-203ENST00000564399 EXOC3-AS1Q8N2X6 119 aa4.8□□□□□ -1.64
VPS4A-203ENST00000564399 C12orf45Q8N5I9 185 aaPredicted RBP4.8□□□□□ -1.64
VPS4A-203ENST00000564399 Q8N976 141 aa4.8□□□□□ -1.64
VPS4A-203ENST00000564399 OR1L4Q8NGR5 311 aa4.8□□□□□ -1.64
VPS4A-203ENST00000564399 MGST2Q99735 147 aa4.8□□□□□ -1.64
VPS4A-203ENST00000564399 SOSTQ9BQB4 213 aa4.8□□□□□ -1.64
VPS4A-203ENST00000564399 NAA50Q9GZZ1 169 aaKnown RBP4.8□□□□□ -1.64
VPS4A-203ENST00000564399 AAMDCQ9H7C9 122 aa4.8□□□□□ -1.64
VPS4A-203ENST00000564399 ZNF492Q9P255 531 aa4.8□□□□□ -1.64
VPS4A-203ENST00000564399 RABL2AQ9UBK7 228 aaPredicted RBP4.8□□□□□ -1.64
VPS4A-203ENST00000564399 TRGV11A0A075B6L2 103 aa4.79□□□□□ -1.64
VPS4A-203ENST00000564399 A6NJY4 79 aa4.79□□□□□ -1.64
VPS4A-203ENST00000564399 NDUFB4O95168 129 aa4.79□□□□□ -1.64
VPS4A-203ENST00000564399 IGLV2-11P01706 119 aa4.79□□□□□ -1.64
VPS4A-203ENST00000564399 MT1HL1P0DM35 61 aa4.79□□□□□ -1.64
VPS4A-203ENST00000564399 GATA1P15976 413 aaPredicted RBP4.79□□□□□ -1.64
VPS4A-203ENST00000564399 UBE2MP61081 183 aaKnown RBP4.79□□□□□ -1.64
VPS4A-203ENST00000564399 CTF1Q16619 201 aa4.79□□□□□ -1.64
VPS4A-203ENST00000564399 TOR2AQ5JU69 321 aa4.79□□□□□ -1.64
VPS4A-203ENST00000564399 MIC13Q5XKP0 118 aa4.79□□□□□ -1.64
VPS4A-203ENST00000564399 FAM159AQ6UWV7 190 aa4.79□□□□□ -1.64
VPS4A-203ENST00000564399 ATP6V0E2Q8NHE4 81 aa4.79□□□□□ -1.64
VPS4A-203ENST00000564399 MCFD2Q8NI22 146 aa4.79□□□□□ -1.64
VPS4A-203ENST00000564399 Q8TAT8 98 aa4.79□□□□□ -1.64
VPS4A-203ENST00000564399 DAZAP1Q96EP5 407 aaKnown RBP4.79□□□□□ -1.64
VPS4A-203ENST00000564399 PFDN5Q99471 154 aa4.79□□□□□ -1.64
VPS4A-203ENST00000564399 PRADC1Q9BSG0 188 aa4.79□□□□□ -1.64
VPS4A-203ENST00000564399 GPN1Q9HCN4 374 aaPredicted RBP4.79□□□□□ -1.64
VPS4A-203ENST00000564399 RSL24D1Q9UHA3 163 aaKnown RBP4.79□□□□□ -1.64
VPS4A-203ENST00000564399 COX11Q9Y6N1 276 aa4.79□□□□□ -1.64
VPS4A-203ENST00000564399 GGTLC3B5MD39 225 aa4.78□□□□□ -1.64
VPS4A-203ENST00000564399 M0R2P5 195 aa4.78□□□□□ -1.64
VPS4A-203ENST00000564399 TSC22D2O75157 780 aa4.78□□□□□ -1.64
VPS4A-203ENST00000564399 PYYP10082 97 aa4.78□□□□□ -1.64
VPS4A-203ENST00000564399 ZNF138P52744 262 aa4.78□□□□□ -1.64
VPS4A-203ENST00000564399 ARL16Q0P5N6 197 aa4.78□□□□□ -1.64
VPS4A-203ENST00000564399 PDE6HQ13956 83 aa4.78□□□□□ -1.64
VPS4A-203ENST00000564399 BAK1Q16611 211 aa4.78□□□□□ -1.64
VPS4A-203ENST00000564399 VWC2Q2TAL6 325 aa4.78□□□□□ -1.64
VPS4A-203ENST00000564399 NRARPQ7Z6K4 114 aa4.78□□□□□ -1.64
VPS4A-203ENST00000564399 DAZ4Q86SG3 579 aaKnown RBP4.78□□□□□ -1.64
VPS4A-203ENST00000564399 Q8N3U1 123 aa4.78□□□□□ -1.64
VPS4A-203ENST00000564399 RMI2Q96E14 147 aa4.78□□□□□ -1.64
VPS4A-203ENST00000564399 SLC25A21Q9BQT8 299 aaPredicted RBP4.78□□□□□ -1.64
VPS4A-203ENST00000564399 GGACTQ9BVM4 153 aa4.78□□□□□ -1.64
VPS4A-203ENST00000564399 GTSF1LQ9H1H1 148 aa4.78□□□□□ -1.64
VPS4A-203ENST00000564399 DAZ3Q9NR90 486 aaKnown RBP4.78□□□□□ -1.64
VPS4A-203ENST00000564399 NAGKQ9UJ70 344 aa4.78□□□□□ -1.64
VPS4A-203ENST00000564399 IGKV2D-24A0A075B6R9 120 aa4.77□□□□□ -1.65
VPS4A-203ENST00000564399 RNF222A6NCQ9 220 aa4.77□□□□□ -1.65
VPS4A-203ENST00000564399 FBLL1A6NHQ2 334 aaKnown RBP4.77□□□□□ -1.65
VPS4A-203ENST00000564399 TAS2R30P59541 319 aa4.77□□□□□ -1.65
VPS4A-203ENST00000564399 ZNF266Q14584 549 aa4.77□□□□□ -1.65
VPS4A-203ENST00000564399 RHOHQ15669 191 aa4.77□□□□□ -1.65
VPS4A-203ENST00000564399 TOMM5Q8N4H5 51 aa4.77□□□□□ -1.65
VPS4A-203ENST00000564399 SLC25A29Q8N8R3 303 aa4.77□□□□□ -1.65
VPS4A-203ENST00000564399 DYNC2LI1Q8TCX1 351 aa4.77□□□□□ -1.65
VPS4A-203ENST00000564399 SLC39A9Q9NUM3 307 aa4.77□□□□□ -1.65
VPS4A-203ENST00000564399 GSKIPQ9P0R6 139 aa4.77□□□□□ -1.65
VPS4A-203ENST00000564399 TMEM14CQ9P0S9 112 aa4.77□□□□□ -1.65
VPS4A-203ENST00000564399 TRAV8-1A0A0A6YYK1 113 aa4.76□□□□□ -1.65
VPS4A-203ENST00000564399 IGHV3-73A0A0B4J1V6 119 aa4.76□□□□□ -1.65
VPS4A-203ENST00000564399 TRBV7-9A0A0J9YWB2 115 aa4.76□□□□□ -1.65
VPS4A-203ENST00000564399 C5orf51A6NDU8 294 aa4.76□□□□□ -1.65
VPS4A-203ENST00000564399 L7N2F9 121 aa4.76□□□□□ -1.65
VPS4A-203ENST00000564399 GNRH2O43555 120 aa4.76□□□□□ -1.65
VPS4A-203ENST00000564399 CSN1S1P47710 185 aa4.76□□□□□ -1.65
VPS4A-203ENST00000564399 AP3S2P59780 193 aa4.76□□□□□ -1.65
VPS4A-203ENST00000564399 VAMP2P63027 116 aa4.76□□□□□ -1.65
VPS4A-203ENST00000564399 IAH1Q2TAA2 248 aaPredicted RBP4.76□□□□□ -1.65
VPS4A-203ENST00000564399 Q6ZRU5 148 aa4.76□□□□□ -1.65
VPS4A-203ENST00000564399 C20orf85Q9H1P6 137 aa4.76□□□□□ -1.65
VPS4A-203ENST00000564399 SH3BGRL3Q9H299 93 aa4.76□□□□□ -1.65
VPS4A-203ENST00000564399 DPH3P1Q9H4G8 78 aa4.76□□□□□ -1.65
VPS4A-203ENST00000564399 RPH3ALQ9UNE2 315 aa4.76□□□□□ -1.65
VPS4A-203ENST00000564399 TRBV6-4A0A1B0GX49 114 aa4.75□□□□□ -1.65
VPS4A-203ENST00000564399 C9orf170A2RU37 121 aa4.75□□□□□ -1.65
VPS4A-203ENST00000564399 C7orf66A4D0T2 115 aa4.75□□□□□ -1.65
VPS4A-203ENST00000564399 CST7O76096 145 aa4.75□□□□□ -1.65
VPS4A-203ENST00000564399 OR10J4P0C629 311 aa4.75□□□□□ -1.65
VPS4A-203ENST00000564399 NBEAP1P0C6P0 100 aa4.75□□□□□ -1.65
VPS4A-203ENST00000564399 RPL29P47914 159 aaKnown RBP4.75□□□□□ -1.65
VPS4A-203ENST00000564399 BCAP31P51572 246 aa4.75□□□□□ -1.65
VPS4A-203ENST00000564399 BAXQ07812 192 aa4.75□□□□□ -1.65
VPS4A-203ENST00000564399 SPCS2Q15005 226 aa4.75□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 101.2 ms