RNA–Protein interactions for RNA: ENST00000563909.5

RNF40-205, Transcript of ring finger protein 40, humanhuman

TSL 3

Gene RNF40, Length 711 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RNF40-205ENST00000563909 HIST1H1AQ02539 215 aaPredicted RBP11.18□□□□□ -0.62
RNF40-205ENST00000563909 RXFP4Q8TDU9 374 aa11.18□□□□□ -0.62
RNF40-205ENST00000563909 SFT2D1Q8WV19 159 aa11.18□□□□□ -0.62
RNF40-205ENST00000563909 NIPSNAP3BQ9BS92 247 aa11.18□□□□□ -0.62
RNF40-205ENST00000563909 A8MTW9 85 aa11.17□□□□□ -0.62
RNF40-205ENST00000563909 PRAC2D3DTV9 90 aa11.17□□□□□ -0.62
RNF40-205ENST00000563909 TEX46H3BTG2 121 aa11.17□□□□□ -0.62
RNF40-205ENST00000563909 IGKV3-20P01619 116 aa11.17□□□□□ -0.62
RNF40-205ENST00000563909 ZNF705DP0CH99 300 aaPredicted RBP11.17□□□□□ -0.62
RNF40-205ENST00000563909 ZNF705BP0CI00 300 aaPredicted RBP11.17□□□□□ -0.62
RNF40-205ENST00000563909 ARL6IP6Q8N6S5 226 aa11.17□□□□□ -0.62
RNF40-205ENST00000563909 CMTM2Q8TAZ6 248 aa11.17□□□□□ -0.62
RNF40-205ENST00000563909 TMPRSS5Q9H3S3 457 aa11.17□□□□□ -0.62
RNF40-205ENST00000563909 A0A1W2PRE2 83 aa11.16□□□□□ -0.62
RNF40-205ENST00000563909 TMEM189A5PLL7 270 aa11.16□□□□□ -0.62
RNF40-205ENST00000563909 ALKAL2Q6UX46 152 aa11.16□□□□□ -0.62
RNF40-205ENST00000563909 PPP1R14DQ9NXH3 145 aa11.16□□□□□ -0.62
RNF40-205ENST00000563909 DKK2Q9UBU2 259 aa11.16□□□□□ -0.62
RNF40-205ENST00000563909 HBE1P02100 147 aa11.15□□□□□ -0.62
RNF40-205ENST00000563909 FAM222AQ5U5X8 452 aa11.15□□□□□ -0.62
RNF40-205ENST00000563909 C15orf53Q8NAA6 179 aa11.15□□□□□ -0.62
RNF40-205ENST00000563909 NEU1Q99519 415 aa11.15□□□□□ -0.62
RNF40-205ENST00000563909 NKX6-2Q9C056 277 aaPredicted RBP11.15□□□□□ -0.62
RNF40-205ENST00000563909 TRAV1-1A0A0B4J248 108 aa11.14□□□□□ -0.63
RNF40-205ENST00000563909 RBAKDNA6NC62 111 aa11.14□□□□□ -0.63
RNF40-205ENST00000563909 DIRC3C9JPN6 131 aa11.14□□□□□ -0.63
RNF40-205ENST00000563909 NPIPB6E9PJ23 425 aa11.14□□□□□ -0.63
RNF40-205ENST00000563909 SMR3BP02814 79 aaPredicted RBP11.14□□□□□ -0.63
RNF40-205ENST00000563909 SLC25A5P05141 298 aaKnown RBP11.14□□□□□ -0.63
RNF40-205ENST00000563909 PRB4P10163 310 aaPredicted RBP11.14□□□□□ -0.63
RNF40-205ENST00000563909 PPT1P50897 306 aa11.14□□□□□ -0.63
RNF40-205ENST00000563909 SUMO1P63165 101 aaKnown RBP11.14□□□□□ -0.63
RNF40-205ENST00000563909 AMTNQ6UX39 209 aa11.14□□□□□ -0.63
RNF40-205ENST00000563909 ZNF705AQ6ZN79 300 aaPredicted RBP11.14□□□□□ -0.63
RNF40-205ENST00000563909 LINC00477Q96M19 166 aa11.14□□□□□ -0.63
RNF40-205ENST00000563909 ARL2-SNX15V9GYD0 113 aa11.14□□□□□ -0.63
RNF40-205ENST00000563909 TEX48A0A1B0GUV7 120 aa11.13□□□□□ -0.63
RNF40-205ENST00000563909 A0A1B0GV50 99 aa11.13□□□□□ -0.63
RNF40-205ENST00000563909 SMIM9A6NGZ8 99 aa11.13□□□□□ -0.63
RNF40-205ENST00000563909 FAM74A7A6NL05 159 aa11.13□□□□□ -0.63
RNF40-205ENST00000563909 UBE2G2P60604 165 aa11.13□□□□□ -0.63
RNF40-205ENST00000563909 BLOC1S1P78537 153 aa11.13□□□□□ -0.63
RNF40-205ENST00000563909 C9orf47Q6ZRZ4 202 aa11.13□□□□□ -0.63
RNF40-205ENST00000563909 C5orf17Q8NAS9 161 aa11.13□□□□□ -0.63
RNF40-205ENST00000563909 SLC35B3Q9H1N7 401 aa11.13□□□□□ -0.63
RNF40-205ENST00000563909 IGHV3OR16-12A0A075B7B8 117 aa11.12□□□□□ -0.63
RNF40-205ENST00000563909 IGKV2-40A0A087WW87 121 aaPredicted RBP11.12□□□□□ -0.63
RNF40-205ENST00000563909 SERTM2A0A1B0GWG4 89 aa11.12□□□□□ -0.63
RNF40-205ENST00000563909 IGKV2D-40P01614 121 aaPredicted RBP11.12□□□□□ -0.63
RNF40-205ENST00000563909 BTF3P20290 206 aaKnown RBP11.12□□□□□ -0.63
RNF40-205ENST00000563909 TSPOP30536 169 aa11.12□□□□□ -0.63
RNF40-205ENST00000563909 FXYD7P58549 80 aa11.12□□□□□ -0.63
RNF40-205ENST00000563909 TMEM78Q5T7P6 136 aa11.12□□□□□ -0.63
RNF40-205ENST00000563909 ODF3Q96PU9 254 aa11.12□□□□□ -0.63
RNF40-205ENST00000563909 AGPAT4-IT1Q9H0P7 198 aa11.12□□□□□ -0.63
RNF40-205ENST00000563909 EPDR1Q9UM22 224 aa11.12□□□□□ -0.63
RNF40-205ENST00000563909 RPH3ALQ9UNE2 315 aa11.12□□□□□ -0.63
RNF40-205ENST00000563909 YTHDF2Q9Y5A9 579 aaKnown RBP11.12□□□□□ -0.63
RNF40-205ENST00000563909 GGTLC3B5MD39 225 aa11.11□□□□□ -0.63
RNF40-205ENST00000563909 K7EQM0 130 aa11.11□□□□□ -0.63
RNF40-205ENST00000563909 FUSP35637 526 aaKnown RBP eCLIP11.11□□□□□ -0.63
RNF40-205ENST00000563909 LEPP41159 167 aa11.11□□□□□ -0.63
RNF40-205ENST00000563909 ERCC8Q13216 396 aa11.11□□□□□ -0.63
RNF40-205ENST00000563909 SERTAD4-AS1Q5TG53 156 aa11.11□□□□□ -0.63
RNF40-205ENST00000563909 FAM229AH3BQW9 127 aa11.1□□□□□ -0.63
RNF40-205ENST00000563909 PAGE4O60829 102 aa11.1□□□□□ -0.63
RNF40-205ENST00000563909 IFNA7P01567 189 aa11.1□□□□□ -0.63
RNF40-205ENST00000563909 TCRAP04437 139 aa11.1□□□□□ -0.63
RNF40-205ENST00000563909 CT45A10P0DMU9 189 aa11.1□□□□□ -0.63
RNF40-205ENST00000563909 CDKN1BP46527 198 aa11.1□□□□□ -0.63
RNF40-205ENST00000563909 CCL18P55774 89 aa11.1□□□□□ -0.63
RNF40-205ENST00000563909 GNG5P63218 68 aa11.1□□□□□ -0.63
RNF40-205ENST00000563909 SPINK13Q1W4C9 94 aa11.1□□□□□ -0.63
RNF40-205ENST00000563909 CST9LP1Q5W188 147 aa11.1□□□□□ -0.63
RNF40-205ENST00000563909 TEX261Q6UWH6 196 aa11.1□□□□□ -0.63
RNF40-205ENST00000563909 GOLT1AQ6ZVE7 132 aa11.1□□□□□ -0.63
RNF40-205ENST00000563909 SYT8Q8NBV8 401 aa11.1□□□□□ -0.63
RNF40-205ENST00000563909 VGLL1Q99990 258 aa11.1□□□□□ -0.63
RNF40-205ENST00000563909 TCEAL7Q9BRU2 100 aa11.1□□□□□ -0.63
RNF40-205ENST00000563909 MANBALQ9NQG1 85 aa11.1□□□□□ -0.63
RNF40-205ENST00000563909 M0R2Z0 102 aa11.09□□□□□ -0.63
RNF40-205ENST00000563909 ZNF138P52744 262 aa11.09□□□□□ -0.63
RNF40-205ENST00000563909 CCL20P78556 96 aa11.09□□□□□ -0.63
RNF40-205ENST00000563909 IGF2BP2-AS1Q96M15 143 aa11.09□□□□□ -0.63
RNF40-205ENST00000563909 PGPEP1Q9NXJ5 209 aa11.09□□□□□ -0.63
RNF40-205ENST00000563909 ZNF492Q9P255 531 aa11.09□□□□□ -0.63
RNF40-205ENST00000563909 LINC00588Q9Y4M8 146 aa11.09□□□□□ -0.63
RNF40-205ENST00000563909 TRBV7-9A0A0J9YWB2 115 aa11.08□□□□□ -0.64
RNF40-205ENST00000563909 F6UZH7 168 aa11.08□□□□□ -0.64
RNF40-205ENST00000563909 NUDT3O95989 172 aa11.08□□□□□ -0.64
RNF40-205ENST00000563909 INSP01308 110 aa11.08□□□□□ -0.64
RNF40-205ENST00000563909 IFNA1P01562 189 aa11.08□□□□□ -0.64
RNF40-205ENST00000563909 DAD1P61803 113 aa11.08□□□□□ -0.64
RNF40-205ENST00000563909 CYB561D1Q8N8Q1 229 aa11.08□□□□□ -0.64
RNF40-205ENST00000563909 HIST1H2BAQ96A08 127 aa11.08□□□□□ -0.64
RNF40-205ENST00000563909 KRTAP1-5Q9BYS1 174 aa11.08□□□□□ -0.64
RNF40-205ENST00000563909 GNG13Q9P2W3 67 aa11.08□□□□□ -0.64
RNF40-205ENST00000563909 GOLT1BQ9Y3E0 138 aa11.08□□□□□ -0.64
RNF40-205ENST00000563909 LENEPQ9Y5L5 61 aa11.08□□□□□ -0.64
RNF40-205ENST00000563909 FBLL1A6NHQ2 334 aaKnown RBP11.07□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms