RNA–Protein interactions for RNA: ENST00000561713.1

VPS35-202, Transcript of VPS35, retromer complex component, humanhuman

TSL 4

Gene VPS35, Length 589 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-202ENST00000561713 ZNF492Q9P255 531 aa13.07□□□□□ -0.32
VPS35-202ENST00000561713 IGHV1OR15-1A0A075B7D0 117 aa13.06□□□□□ -0.32
VPS35-202ENST00000561713 H3BNG1 76 aa13.06□□□□□ -0.32
VPS35-202ENST00000561713 FFAR4Q5NUL3 377 aa13.06□□□□□ -0.32
VPS35-202ENST00000561713 PRAF2O60831 178 aa13.05□□□□□ -0.32
VPS35-202ENST00000561713 ZNF138P52744 262 aa13.05□□□□□ -0.32
VPS35-202ENST00000561713 RANP62826 216 aaKnown RBP13.05□□□□□ -0.32
VPS35-202ENST00000561713 RPH3ALQ9UNE2 315 aa13.05□□□□□ -0.32
VPS35-202ENST00000561713 HSPB11Q9Y547 144 aa13.05□□□□□ -0.32
VPS35-202ENST00000561713 C17orf112F2Z3M2 114 aa13.04□□□□□ -0.32
VPS35-202ENST00000561713 SSNA1O43805 119 aa13.04□□□□□ -0.32
VPS35-202ENST00000561713 IBA57Q5T440 356 aaKnown RBP13.04□□□□□ -0.32
VPS35-202ENST00000561713 ST6GAL2Q96JF0 529 aa13.04□□□□□ -0.32
VPS35-202ENST00000561713 C18orf15Q96N68 181 aa13.04□□□□□ -0.32
VPS35-202ENST00000561713 MBD2Q9UBB5 411 aa13.04□□□□□ -0.32
VPS35-202ENST00000561713 BTF3P20290 206 aaKnown RBP13.03□□□□□ -0.32
VPS35-202ENST00000561713 LINC00315P59091 139 aa13.03□□□□□ -0.32
VPS35-202ENST00000561713 ZNF415Q09FC8 603 aa13.03□□□□□ -0.32
VPS35-202ENST00000561713 C8orf49Q96NF6 230 aa13.03□□□□□ -0.32
VPS35-202ENST00000561713 EPM2AB3EWF7 344 aa13.02□□□□□ -0.33
VPS35-202ENST00000561713 PAX4O43316 350 aa13.02□□□□□ -0.33
VPS35-202ENST00000561713 MPC2O95563 127 aa13.02□□□□□ -0.33
VPS35-202ENST00000561713 NMBP08949 121 aa13.02□□□□□ -0.33
VPS35-202ENST00000561713 CYCSP99999 105 aaKnown RBP13.02□□□□□ -0.33
VPS35-202ENST00000561713 HYLS1Q96M11 299 aa13.02□□□□□ -0.33
VPS35-202ENST00000561713 PTTG2Q9NZH5 202 aa13.02□□□□□ -0.33
VPS35-202ENST00000561713 ICOSQ9Y6W8 199 aa13.02□□□□□ -0.33
VPS35-202ENST00000561713 VPS13BQ7Z7G8 4022 aa13.02□□□□□ -0.33
VPS35-202ENST00000561713 DMBT1Q9UGM3 2413 aaPredicted RBP13.01□□□□□ -0.33
VPS35-202ENST00000561713 NXPH4O95158 308 aa13.01□□□□□ -0.33
VPS35-202ENST00000561713 SFTA3P0C7M3 94 aa13.01□□□□□ -0.33
VPS35-202ENST00000561713 CSN1S1P47710 185 aa13.01□□□□□ -0.33
VPS35-202ENST00000561713 KHDC3LQ587J8 217 aa13.01□□□□□ -0.33
VPS35-202ENST00000561713 MARVELD1Q9BSK0 173 aa13.01□□□□□ -0.33
VPS35-202ENST00000561713 WFDC1Q9HC57 220 aa13.01□□□□□ -0.33
VPS35-202ENST00000561713 MDFICQ9P1T7 246 aa13.01□□□□□ -0.33
VPS35-202ENST00000561713 NAGKQ9UJ70 344 aa13.01□□□□□ -0.33
VPS35-202ENST00000561713 MYCBP2O75592 4640 aa13.01□□□□□ -0.33
VPS35-202ENST00000561713 A6NHS1 94 aa13□□□□□ -0.33
VPS35-202ENST00000561713 FUSP35637 526 aaKnown RBP eCLIP13□□□□□ -0.33
VPS35-202ENST00000561713 ZNF266Q14584 549 aa13□□□□□ -0.33
VPS35-202ENST00000561713 TMEM183BQ1AE95 376 aa13□□□□□ -0.33
VPS35-202ENST00000561713 TMEM183AQ8IXX5 376 aa13□□□□□ -0.33
VPS35-202ENST00000561713 A0A1W2PPQ1 181 aa12.99□□□□□ -0.33
VPS35-202ENST00000561713 DIRC3C9JPN6 131 aa12.99□□□□□ -0.33
VPS35-202ENST00000561713 RPL12P30050 165 aaKnown RBP12.99□□□□□ -0.33
VPS35-202ENST00000561713 RAB2AP61019 212 aa12.99□□□□□ -0.33
VPS35-202ENST00000561713 SCGB1C1Q8TD33 95 aa12.99□□□□□ -0.33
VPS35-202ENST00000561713 RBAKDNA6NC62 111 aa12.98□□□□□ -0.33
VPS35-202ENST00000561713 F6UZH7 168 aa12.98□□□□□ -0.33
VPS35-202ENST00000561713 SIVA1O15304 175 aa12.98□□□□□ -0.33
VPS35-202ENST00000561713 HMGB3O15347 200 aaKnown RBP12.98□□□□□ -0.33
VPS35-202ENST00000561713 IFNA5P01569 189 aa12.98□□□□□ -0.33
VPS35-202ENST00000561713 PET100P0DJ07 73 aa12.98□□□□□ -0.33
VPS35-202ENST00000561713 CRYBA4P53673 196 aa12.98□□□□□ -0.33
VPS35-202ENST00000561713 FHL2Q14192 279 aa12.98□□□□□ -0.33
VPS35-202ENST00000561713 PRO0255Q9UI72 69 aa12.98□□□□□ -0.33
VPS35-202ENST00000561713 INAFM2P0DMQ5 153 aa12.97□□□□□ -0.33
VPS35-202ENST00000561713 GNG5P63218 68 aa12.97□□□□□ -0.33
VPS35-202ENST00000561713 Q6ZRN7 208 aaPredicted RBP12.97□□□□□ -0.33
VPS35-202ENST00000561713 ZNF479Q96JC4 524 aa12.97□□□□□ -0.33
VPS35-202ENST00000561713 TNFRSF18Q9Y5U5 241 aa12.97□□□□□ -0.33
VPS35-202ENST00000561713 TRAV8-1A0A0A6YYK1 113 aa12.96□□□□□ -0.33
VPS35-202ENST00000561713 TRGV4A0A0C4DH28 118 aa12.96□□□□□ -0.33
VPS35-202ENST00000561713 TRBV7-9A0A0J9YWB2 115 aa12.96□□□□□ -0.33
VPS35-202ENST00000561713 TAS2R45P59539 299 aa12.96□□□□□ -0.33
VPS35-202ENST00000561713 Q6AWC8 147 aa12.96□□□□□ -0.33
VPS35-202ENST00000561713 GOLT1AQ6ZVE7 132 aa12.96□□□□□ -0.33
VPS35-202ENST00000561713 LYPD1Q8N2G4 141 aa12.96□□□□□ -0.33
VPS35-202ENST00000561713 OTORQ9NRC9 128 aa12.96□□□□□ -0.33
VPS35-202ENST00000561713 HHLA3Q9XRX5 114 aa12.96□□□□□ -0.33
VPS35-202ENST00000561713 DEFA1P59665 94 aa12.95□□□□□ -0.34
VPS35-202ENST00000561713 DEFA3P59666 94 aa12.95□□□□□ -0.34
VPS35-202ENST00000561713 PGPA6NDG6 321 aa12.94□□□□□ -0.34
VPS35-202ENST00000561713 FAM159AQ6UWV7 190 aa12.94□□□□□ -0.34
VPS35-202ENST00000561713 CMTM2Q8TAZ6 248 aa12.94□□□□□ -0.34
VPS35-202ENST00000561713 TRGV11A0A075B6L2 103 aa12.93□□□□□ -0.34
VPS35-202ENST00000561713 XGP55808 180 aa12.93□□□□□ -0.34
VPS35-202ENST00000561713 LYPD5Q6UWN5 251 aa12.93□□□□□ -0.34
VPS35-202ENST00000561713 WFDC10BQ8IUB3 73 aa12.93□□□□□ -0.34
VPS35-202ENST00000561713 TVP23CQ96ET8 276 aa12.93□□□□□ -0.34
VPS35-202ENST00000561713 SGK494Q96LW2 274 aa12.93□□□□□ -0.34
VPS35-202ENST00000561713 ALG5Q9Y673 324 aa12.93□□□□□ -0.34
VPS35-202ENST00000561713 LOC100131303A0A0U1RQF7 123 aa12.92□□□□□ -0.34
VPS35-202ENST00000561713 K7EQD1 137 aa12.92□□□□□ -0.34
VPS35-202ENST00000561713 GNRH2O43555 120 aa12.92□□□□□ -0.34
VPS35-202ENST00000561713 DNAH10OSP0CZ25 163 aa12.92□□□□□ -0.34
VPS35-202ENST00000561713 GYPEP15421 78 aa12.92□□□□□ -0.34
VPS35-202ENST00000561713 SRIP30626 198 aa12.92□□□□□ -0.34
VPS35-202ENST00000561713 MRPL23Q16540 153 aaKnown RBP12.92□□□□□ -0.34
VPS35-202ENST00000561713 ACOT6Q3I5F7 207 aaPredicted RBP12.92□□□□□ -0.34
VPS35-202ENST00000561713 OR10G4Q8NGN3 311 aa12.92□□□□□ -0.34
VPS35-202ENST00000561713 PGPEP1Q9NXJ5 209 aa12.92□□□□□ -0.34
VPS35-202ENST00000561713 SRRM2Q9UQ35 2752 aaKnown RBP12.92□□□□□ -0.34
VPS35-202ENST00000561713 TYMSP04818 313 aa12.91□□□□□ -0.34
VPS35-202ENST00000561713 ARL14EPLP0DKL9 152 aa12.91□□□□□ -0.34
VPS35-202ENST00000561713 NEGR1Q7Z3B1 354 aa12.91□□□□□ -0.34
VPS35-202ENST00000561713 HSD17B11Q8NBQ5 300 aa12.91□□□□□ -0.34
VPS35-202ENST00000561713 LENEPQ9Y5L5 61 aa12.91□□□□□ -0.34
VPS35-202ENST00000561713 IGHV3-16A0A0C4DH30 117 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms