RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 UBE2L5PA0A1B0GUS4 154 aa11.06□□□□□ -0.64
CLN3-208ENST00000561505 RBAKDNA6NC62 111 aa11.06□□□□□ -0.64
CLN3-208ENST00000561505 LRCOL1A6NCL2 159 aa11.06□□□□□ -0.64
CLN3-208ENST00000561505 ORM1P02763 201 aa11.06□□□□□ -0.64
CLN3-208ENST00000561505 PVALBP20472 110 aaPredicted RBP11.06□□□□□ -0.64
CLN3-208ENST00000561505 TIRAPP58753 221 aa11.06□□□□□ -0.64
CLN3-208ENST00000561505 HBG1P69891 147 aa11.06□□□□□ -0.64
CLN3-208ENST00000561505 HBG2P69892 147 aa11.06□□□□□ -0.64
CLN3-208ENST00000561505 BAXQ07812 192 aa11.06□□□□□ -0.64
CLN3-208ENST00000561505 ZNF415Q09FC8 603 aa11.06□□□□□ -0.64
CLN3-208ENST00000561505 GCSAMLQ5JQS6 135 aa11.06□□□□□ -0.64
CLN3-208ENST00000561505 Q6AWC8 147 aa11.06□□□□□ -0.64
CLN3-208ENST00000561505 ZNF479Q96JC4 524 aa11.06□□□□□ -0.64
CLN3-208ENST00000561505 SPXQ9BT56 116 aa11.06□□□□□ -0.64
CLN3-208ENST00000561505 TMEM70Q9BUB7 260 aa11.06□□□□□ -0.64
CLN3-208ENST00000561505 NPCDR1Q9BY65 106 aa11.06□□□□□ -0.64
CLN3-208ENST00000561505 LENEPQ9Y5L5 61 aa11.06□□□□□ -0.64
CLN3-208ENST00000561505 TCRBP04435 133 aa11.05□□□□□ -0.64
CLN3-208ENST00000561505 FGF7P21781 194 aa11.05□□□□□ -0.64
CLN3-208ENST00000561505 EVI2AP22794 236 aa11.05□□□□□ -0.64
CLN3-208ENST00000561505 BLNKQ8WV28 456 aa11.05□□□□□ -0.64
CLN3-208ENST00000561505 FXYD5Q96DB9 178 aa11.05□□□□□ -0.64
CLN3-208ENST00000561505 MDFICQ9P1T7 246 aa11.05□□□□□ -0.64
CLN3-208ENST00000561505 SRIP30626 198 aa11.04□□□□□ -0.64
CLN3-208ENST00000561505 RAB32Q13637 225 aa11.04□□□□□ -0.64
CLN3-208ENST00000561505 TDRG1Q3Y452 100 aa11.04□□□□□ -0.64
CLN3-208ENST00000561505 FAM122CQ6P4D5 195 aa11.04□□□□□ -0.64
CLN3-208ENST00000561505 STX12Q86Y82 276 aa11.04□□□□□ -0.64
CLN3-208ENST00000561505 NTN5Q8WTR8 489 aaPredicted RBP11.04□□□□□ -0.64
CLN3-208ENST00000561505 ARPC5LQ9BPX5 153 aa11.04□□□□□ -0.64
CLN3-208ENST00000561505 OR51M1Q9H341 326 aa11.04□□□□□ -0.64
CLN3-208ENST00000561505 TRGV4A0A0C4DH28 118 aa11.03□□□□□ -0.64
CLN3-208ENST00000561505 C5orf51A6NDU8 294 aa11.03□□□□□ -0.64
CLN3-208ENST00000561505 CCDC160A6NGH7 325 aa11.03□□□□□ -0.64
CLN3-208ENST00000561505 LYRM1O43325 122 aa11.03□□□□□ -0.64
CLN3-208ENST00000561505 SMR3BP02814 79 aaPredicted RBP11.03□□□□□ -0.64
CLN3-208ENST00000561505 MIR17HGQ75NE6 70 aa11.03□□□□□ -0.64
CLN3-208ENST00000561505 C10orf126Q8N4M7 172 aa11.03□□□□□ -0.64
CLN3-208ENST00000561505 SEC22CQ9BRL7 303 aa11.03□□□□□ -0.64
CLN3-208ENST00000561505 FAM25EA8MYX2 175 aa11.02□□□□□ -0.65
CLN3-208ENST00000561505 E5RGE8 158 aa11.02□□□□□ -0.65
CLN3-208ENST00000561505 SFTA3P0C7M3 94 aa11.02□□□□□ -0.65
CLN3-208ENST00000561505 GYPEP15421 78 aa11.02□□□□□ -0.65
CLN3-208ENST00000561505 TMED6Q8WW62 240 aa11.02□□□□□ -0.65
CLN3-208ENST00000561505 TXNDC17Q9BRA2 123 aa11.02□□□□□ -0.65
CLN3-208ENST00000561505 TRAV4A0A0B4J268 109 aa11.01□□□□□ -0.65
CLN3-208ENST00000561505 FAM229AH3BQW9 127 aa11.01□□□□□ -0.65
CLN3-208ENST00000561505 SH2D6Q7Z4S9 175 aa11.01□□□□□ -0.65
CLN3-208ENST00000561505 Q8TAT8 98 aa11.01□□□□□ -0.65
CLN3-208ENST00000561505 PHYHIPLQ96FC7 376 aa11.01□□□□□ -0.65
CLN3-208ENST00000561505 GPN1Q9HCN4 374 aaPredicted RBP11.01□□□□□ -0.65
CLN3-208ENST00000561505 IBA57-AS1B1ANH7 110 aa11□□□□□ -0.65
CLN3-208ENST00000561505 C1QBP02746 253 aa11□□□□□ -0.65
CLN3-208ENST00000561505 CRYGDP07320 174 aa11□□□□□ -0.65
CLN3-208ENST00000561505 NHLH2Q02577 135 aa11□□□□□ -0.65
CLN3-208ENST00000561505 LINC01556Q5JQF7 62 aa11□□□□□ -0.65
CLN3-208ENST00000561505 PAXXQ9BUH6 204 aa11□□□□□ -0.65
CLN3-208ENST00000561505 NUDT15Q9NV35 164 aa11□□□□□ -0.65
CLN3-208ENST00000561505 BOLA1Q9Y3E2 137 aa11□□□□□ -0.65
CLN3-208ENST00000561505 TRGV11A0A075B6L2 103 aa10.99□□□□□ -0.65
CLN3-208ENST00000561505 TRAV6A0A075B6T7 132 aa10.99□□□□□ -0.65
CLN3-208ENST00000561505 C9JCJ5 164 aa10.99□□□□□ -0.65
CLN3-208ENST00000561505 MUC21Q5SSG8 566 aa10.99□□□□□ -0.65
CLN3-208ENST00000561505 ARL6IP6Q8N6S5 226 aa10.99□□□□□ -0.65
CLN3-208ENST00000561505 IGHV3-38A0A0C4DH36 116 aa10.98□□□□□ -0.65
CLN3-208ENST00000561505 OR10J4P0C629 311 aa10.98□□□□□ -0.65
CLN3-208ENST00000561505 GATA1P15976 413 aaPredicted RBP10.98□□□□□ -0.65
CLN3-208ENST00000561505 S100A10P60903 97 aa10.98□□□□□ -0.65
CLN3-208ENST00000561505 TMEM183BQ1AE95 376 aa10.98□□□□□ -0.65
CLN3-208ENST00000561505 Q6ZSN1 163 aa10.98□□□□□ -0.65
CLN3-208ENST00000561505 TMEM183AQ8IXX5 376 aa10.98□□□□□ -0.65
CLN3-208ENST00000561505 OR5C1Q8NGR4 320 aa10.98□□□□□ -0.65
CLN3-208ENST00000561505 PCNPQ8WW12 178 aaKnown RBP10.98□□□□□ -0.65
CLN3-208ENST00000561505 WDR61Q9GZS3 305 aaKnown RBP10.98□□□□□ -0.65
CLN3-208ENST00000561505 IGLV5-52A0A0A0MRZ9 124 aa10.97□□□□□ -0.65
CLN3-208ENST00000561505 DIRC3C9JPN6 131 aa10.97□□□□□ -0.65
CLN3-208ENST00000561505 M0R2P5 195 aa10.97□□□□□ -0.65
CLN3-208ENST00000561505 H2AFB2P0C5Z0 115 aa10.97□□□□□ -0.65
CLN3-208ENST00000561505 CSN1S1P47710 185 aa10.97□□□□□ -0.65
CLN3-208ENST00000561505 FAM159AQ6UWV7 190 aa10.97□□□□□ -0.65
CLN3-208ENST00000561505 THAP6Q8TBB0 222 aa10.97□□□□□ -0.65
CLN3-208ENST00000561505 FAM30AQ9NZY2 134 aa10.97□□□□□ -0.65
CLN3-208ENST00000561505 IGHV3-16A0A0C4DH30 117 aa10.96□□□□□ -0.65
CLN3-208ENST00000561505 LOC100131303A0A0U1RQF7 123 aa10.96□□□□□ -0.65
CLN3-208ENST00000561505 RANP62826 216 aaKnown RBP10.96□□□□□ -0.65
CLN3-208ENST00000561505 Q6ZSA8 131 aa10.96□□□□□ -0.65
CLN3-208ENST00000561505 Q8N814 137 aa10.96□□□□□ -0.65
CLN3-208ENST00000561505 KCNIP2Q9NS61 270 aa10.96□□□□□ -0.65
CLN3-208ENST00000561505 H0YIZ8 118 aa10.95□□□□□ -0.66
CLN3-208ENST00000561505 OR4C5Q8NGB2 326 aa10.95□□□□□ -0.66
CLN3-208ENST00000561505 SLC25A31Q9H0C2 315 aa10.95□□□□□ -0.66
CLN3-208ENST00000561505 GNRH2O43555 120 aa10.94□□□□□ -0.66
CLN3-208ENST00000561505 CIDEAO60543 219 aa10.94□□□□□ -0.66
CLN3-208ENST00000561505 KRTAP29-1A8MX34 341 aaPredicted RBP10.93□□□□□ -0.66
CLN3-208ENST00000561505 OR7C2O60412 319 aa10.93□□□□□ -0.66
CLN3-208ENST00000561505 PFN1P07737 140 aaKnown RBP10.93□□□□□ -0.66
CLN3-208ENST00000561505 HAMPP81172 84 aa10.93□□□□□ -0.66
CLN3-208ENST00000561505 TVP23CQ96ET8 276 aa10.93□□□□□ -0.66
CLN3-208ENST00000561505 NMES1Q9C002 83 aa10.93□□□□□ -0.66
CLN3-208ENST00000561505 OR5AC2Q9NZP5 309 aa10.93□□□□□ -0.66
Retrieved 100 of 20,778 RNA–protein pairs in 60.6 ms