RNA–Protein interactions for RNA: ENST00000560260.5

SNX1-210, Transcript of sorting nexin 1, humanhuman

TSL 1 (best)

Gene SNX1, Length 1,326 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX1-210ENST00000560260 ZNF324O75467 553 aaPredicted RBP15.68■□□□□ 0.1
SNX1-210ENST00000560260 C20orf144Q9BQM9 153 aa15.68■□□□□ 0.1
SNX1-210ENST00000560260 C11orf68Q9H3H3 251 aaKnown RBP15.68■□□□□ 0.1
SNX1-210ENST00000560260 IFNA1P01562 189 aa15.68■□□□□ 0.1
SNX1-210ENST00000560260 AKR1C3P42330 323 aa15.68■□□□□ 0.1
SNX1-210ENST00000560260 TMEM256Q8N2U0 113 aa15.68■□□□□ 0.1
SNX1-210ENST00000560260 C11orf52Q96A22 123 aa15.68■□□□□ 0.1
SNX1-210ENST00000560260 LINC01587Q99440 93 aa15.68■□□□□ 0.1
SNX1-210ENST00000560260 KLF12Q9Y4X4 402 aa15.68■□□□□ 0.1
SNX1-210ENST00000560260 AZU1P20160 251 aa15.67■□□□□ 0.1
SNX1-210ENST00000560260 MEF2BQ02080 365 aaPredicted RBP15.67■□□□□ 0.1
SNX1-210ENST00000560260 TREM1Q9NP99 234 aa15.67■□□□□ 0.1
SNX1-210ENST00000560260 H7BYZ3 331 aa15.66■□□□□ 0.1
SNX1-210ENST00000560260 IFITM2Q01629 132 aa15.66■□□□□ 0.1
SNX1-210ENST00000560260 Q6AWC8 147 aa15.66■□□□□ 0.1
SNX1-210ENST00000560260 NIPSNAP3BQ9BS92 247 aa15.66■□□□□ 0.1
SNX1-210ENST00000560260 VAX2Q9UIW0 290 aa15.66■□□□□ 0.1
SNX1-210ENST00000560260 SMIM9A6NGZ8 99 aa15.65■□□□□ 0.1
SNX1-210ENST00000560260 FBLL1A6NHQ2 334 aaKnown RBP15.65■□□□□ 0.1
SNX1-210ENST00000560260 ZNF80P51504 273 aaPredicted RBP15.65■□□□□ 0.1
SNX1-210ENST00000560260 TAS2R60P59551 318 aa15.65■□□□□ 0.1
SNX1-210ENST00000560260 TMEM183BQ1AE95 376 aa15.65■□□□□ 0.1
SNX1-210ENST00000560260 RRN3P1Q2M238 152 aa15.65■□□□□ 0.1
SNX1-210ENST00000560260 FMC1Q96HJ9 113 aa15.65■□□□□ 0.1
SNX1-210ENST00000560260 TXNDC17Q9BRA2 123 aa15.65■□□□□ 0.1
SNX1-210ENST00000560260 NDFIP1Q9BT67 221 aa15.65■□□□□ 0.1
SNX1-210ENST00000560260 STARD9Q9P2P6 4700 aa15.64■□□□□ 0.09
SNX1-210ENST00000560260 TRBV6-1A0A0K0K1D8 114 aa15.64■□□□□ 0.09
SNX1-210ENST00000560260 DERL1Q9BUN8 251 aa15.64■□□□□ 0.09
SNX1-210ENST00000560260 PLAC8L1A1L4L8 177 aa15.63■□□□□ 0.09
SNX1-210ENST00000560260 HTN1P15515 57 aa15.63■□□□□ 0.09
SNX1-210ENST00000560260 UBE2G1P62253 170 aa15.63■□□□□ 0.09
SNX1-210ENST00000560260 ZNF506Q5JVG8 444 aa15.63■□□□□ 0.09
SNX1-210ENST00000560260 WWC2-AS2Q96NR7 200 aa15.63■□□□□ 0.09
SNX1-210ENST00000560260 CELA1Q9UNI1 258 aa15.63■□□□□ 0.09
SNX1-210ENST00000560260 RBFOX3A6NFN3 312 aa15.62■□□□□ 0.09
SNX1-210ENST00000560260 LTAP01374 205 aa15.62■□□□□ 0.09
SNX1-210ENST00000560260 TOR2AQ5JU69 321 aa15.62■□□□□ 0.09
SNX1-210ENST00000560260 PYGO2Q9BRQ0 406 aa15.62■□□□□ 0.09
SNX1-210ENST00000560260 GCGP01275 180 aa15.61■□□□□ 0.09
SNX1-210ENST00000560260 TAGLN2P37802 199 aaKnown RBP15.61■□□□□ 0.09
SNX1-210ENST00000560260 EMP1P54849 157 aa15.61■□□□□ 0.09
SNX1-210ENST00000560260 SAPCD1Q5SSQ6 148 aa15.61■□□□□ 0.09
SNX1-210ENST00000560260 RNASE8Q8TDE3 154 aaKnown RBP15.61■□□□□ 0.09
SNX1-210ENST00000560260 FAM210AQ96ND0 272 aa15.61■□□□□ 0.09
SNX1-210ENST00000560260 LINC00467Q9BRT7 94 aa15.61■□□□□ 0.09
SNX1-210ENST00000560260 PDE6DO43924 150 aa15.6■□□□□ 0.09
SNX1-210ENST00000560260 RPL35P42766 123 aaKnown RBP15.6■□□□□ 0.09
SNX1-210ENST00000560260 SMUG1Q53HV7 270 aa15.6■□□□□ 0.09
SNX1-210ENST00000560260 MUC21Q5SSG8 566 aa15.6■□□□□ 0.09
SNX1-210ENST00000560260 ZC2HC1AQ96GY0 325 aa15.6■□□□□ 0.09
SNX1-210ENST00000560260 C11orf21Q9P2W6 132 aa15.6■□□□□ 0.09
SNX1-210ENST00000560260 TP53TG3Q9ULZ0 132 aa15.6■□□□□ 0.09
SNX1-210ENST00000560260 IGHV1OR15-1A0A075B7D0 117 aa15.59■□□□□ 0.09
SNX1-210ENST00000560260 COX8CQ7Z4L0 72 aa15.59■□□□□ 0.09
SNX1-210ENST00000560260 NHLRC2Q8NBF2 726 aa15.59■□□□□ 0.09
SNX1-210ENST00000560260 IL17DQ8TAD2 202 aa15.59■□□□□ 0.09
SNX1-210ENST00000560260 ZFP30Q9Y2G7 519 aa15.59■□□□□ 0.09
SNX1-210ENST00000560260 DYNC2H1Q8NCM8 4307 aaKnown RBP15.58■□□□□ 0.08
SNX1-210ENST00000560260 TRAV21A0A0B4J279 112 aa15.58■□□□□ 0.08
SNX1-210ENST00000560260 CRIP1P50238 77 aa15.58■□□□□ 0.08
SNX1-210ENST00000560260 EIF4E3Q8N5X7 224 aaKnown RBP15.58■□□□□ 0.08
SNX1-210ENST00000560260 TMEM263Q8WUH6 116 aaKnown RBP15.58■□□□□ 0.08
SNX1-210ENST00000560260 RAB19A4D1S5 217 aa15.57■□□□□ 0.08
SNX1-210ENST00000560260 TMEM189A5PLL7 270 aa15.57■□□□□ 0.08
SNX1-210ENST00000560260 RGS13O14921 159 aa15.57■□□□□ 0.08
SNX1-210ENST00000560260 S100A9P06702 114 aaKnown RBP15.57■□□□□ 0.08
SNX1-210ENST00000560260 ANXA2RQ3ZCQ2 193 aa15.57■□□□□ 0.08
SNX1-210ENST00000560260 C16orf74Q96GX8 76 aa15.57■□□□□ 0.08
SNX1-210ENST00000560260 MED9Q9NWA0 146 aa15.57■□□□□ 0.08
SNX1-210ENST00000560260 NAGKQ9UJ70 344 aa15.57■□□□□ 0.08
SNX1-210ENST00000560260 TRBV20OR9-2A0A075B6H5 130 aa15.56■□□□□ 0.08
SNX1-210ENST00000560260 PFN1P07737 140 aaKnown RBP15.56■□□□□ 0.08
SNX1-210ENST00000560260 NANOS2P60321 138 aaKnown RBP15.56■□□□□ 0.08
SNX1-210ENST00000560260 CENPWQ5EE01 88 aa15.56■□□□□ 0.08
SNX1-210ENST00000560260 FAM222AQ5U5X8 452 aa15.56■□□□□ 0.08
SNX1-210ENST00000560260 ZNF767PQ75MW2 155 aa15.56■□□□□ 0.08
SNX1-210ENST00000560260 BAGE2Q86Y30 109 aa15.56■□□□□ 0.08
SNX1-210ENST00000560260 TMEM183AQ8IXX5 376 aa15.56■□□□□ 0.08
SNX1-210ENST00000560260 C11orf72Q8NBR9 251 aa15.56■□□□□ 0.08
SNX1-210ENST00000560260 MLST8Q9BVC4 326 aa15.56■□□□□ 0.08
SNX1-210ENST00000560260 DKK2Q9UBU2 259 aa15.56■□□□□ 0.08
SNX1-210ENST00000560260 CBY3A6NI87 242 aa15.55■□□□□ 0.08
SNX1-210ENST00000560260 ZNF493Q6ZR52 646 aa15.55■□□□□ 0.08
SNX1-210ENST00000560260 EIF5A2Q9GZV4 153 aaKnown RBP15.55■□□□□ 0.08
SNX1-210ENST00000560260 PLECQ15149 4684 aaKnown RBP15.55■□□□□ 0.08
SNX1-210ENST00000560260 IGLV2-8P01709 118 aa15.54■□□□□ 0.08
SNX1-210ENST00000560260 TDRG1Q3Y452 100 aa15.54■□□□□ 0.08
SNX1-210ENST00000560260 C11orf45Q8TAV5 145 aa15.54■□□□□ 0.08
SNX1-210ENST00000560260 CSMD3Q7Z407 3707 aa15.54■□□□□ 0.08
SNX1-210ENST00000560260 TMEM250H0YL14 139 aa15.53■□□□□ 0.08
SNX1-210ENST00000560260 SH2D1AO60880 128 aa15.53■□□□□ 0.08
SNX1-210ENST00000560260 SRSF3P84103 164 aaKnown RBP15.53■□□□□ 0.08
SNX1-210ENST00000560260 MUC7Q8TAX7 377 aa15.53■□□□□ 0.08
SNX1-210ENST00000560260 GSN-AS1Q9NRJ2 163 aa15.53■□□□□ 0.08
SNX1-210ENST00000560260 CXorf65A6NEN9 183 aa15.52■□□□□ 0.08
SNX1-210ENST00000560260 PGPEP1LA6NFU8 196 aa15.52■□□□□ 0.08
SNX1-210ENST00000560260 C9JQL5 133 aa15.52■□□□□ 0.08
SNX1-210ENST00000560260 TYMSP04818 313 aa15.52■□□□□ 0.08
SNX1-210ENST00000560260 SRP19P09132 144 aaKnown RBP15.52■□□□□ 0.08
Retrieved 100 of 20,778 RNA–protein pairs in 87.1 ms