RNA–Protein interactions for RNA: ENST00000560173.1

LDLR-211, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 389 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-211ENST00000560173 M0R3E3 92 aa6.76□□□□□ -1.33
LDLR-211ENST00000560173 PPP1R2P9O14990 202 aa6.76□□□□□ -1.33
LDLR-211ENST00000560173 DEFB4AO15263 64 aa6.76□□□□□ -1.33
LDLR-211ENST00000560173 CRXO43186 299 aaPredicted RBP6.76□□□□□ -1.33
LDLR-211ENST00000560173 EIF3GO75821 320 aaKnown RBP eCLIP6.76□□□□□ -1.33
LDLR-211ENST00000560173 S100A9P06702 114 aaKnown RBP6.76□□□□□ -1.33
LDLR-211ENST00000560173 NBEAP1P0C6P0 100 aa6.76□□□□□ -1.33
LDLR-211ENST00000560173 RBMY1A1P0DJD3 496 aaKnown RBP6.76□□□□□ -1.33
LDLR-211ENST00000560173 RBMY1CP0DJD4 496 aa6.76□□□□□ -1.33
LDLR-211ENST00000560173 UBE2G2P60604 165 aa6.76□□□□□ -1.33
LDLR-211ENST00000560173 RBMY1FQ15415 496 aaKnown RBP6.76□□□□□ -1.33
LDLR-211ENST00000560173 SPINK13Q1W4C9 94 aa6.76□□□□□ -1.33
LDLR-211ENST00000560173 C1orf158Q8N1D5 194 aa6.76□□□□□ -1.33
LDLR-211ENST00000560173 EXOC3-AS1Q8N2X6 119 aa6.76□□□□□ -1.33
LDLR-211ENST00000560173 OR10J6PQ8NGY7 276 aa6.76□□□□□ -1.33
LDLR-211ENST00000560173 ANAPC16Q96DE5 110 aa6.76□□□□□ -1.33
LDLR-211ENST00000560173 BTF3L4Q96K17 158 aa6.76□□□□□ -1.33
LDLR-211ENST00000560173 IGF2BP2-AS1Q96M15 143 aa6.76□□□□□ -1.33
LDLR-211ENST00000560173 NEU1Q99519 415 aa6.76□□□□□ -1.33
LDLR-211ENST00000560173 PARLQ9H300 379 aa6.76□□□□□ -1.33
LDLR-211ENST00000560173 GOLT1BQ9Y3E0 138 aa6.76□□□□□ -1.33
LDLR-211ENST00000560173 LCE6AA0A183 80 aa6.75□□□□□ -1.33
LDLR-211ENST00000560173 C9JCJ5 164 aa6.75□□□□□ -1.33
LDLR-211ENST00000560173 NPIPB6E9PJ23 425 aa6.75□□□□□ -1.33
LDLR-211ENST00000560173 INSP01308 110 aa6.75□□□□□ -1.33
LDLR-211ENST00000560173 ZNF674Q2M3X9 581 aa6.75□□□□□ -1.33
LDLR-211ENST00000560173 LYPD1Q8N2G4 141 aa6.75□□□□□ -1.33
LDLR-211ENST00000560173 HIST1H2BAQ96A08 127 aa6.75□□□□□ -1.33
LDLR-211ENST00000560173 AAMDCQ9H7C9 122 aa6.75□□□□□ -1.33
LDLR-211ENST00000560173 PPP1R14DQ9NXH3 145 aa6.75□□□□□ -1.33
LDLR-211ENST00000560173 HYDINQ4G0P3 5121 aa6.75□□□□□ -1.33
LDLR-211ENST00000560173 TRAV12-2A0A075B6T6 113 aa6.74□□□□□ -1.33
LDLR-211ENST00000560173 IGHV3OR16-12A0A075B7B8 117 aa6.74□□□□□ -1.33
LDLR-211ENST00000560173 SMIM9A6NGZ8 99 aa6.74□□□□□ -1.33
LDLR-211ENST00000560173 ATP5G3P48201 142 aa6.74□□□□□ -1.33
LDLR-211ENST00000560173 TAS2R60P59551 318 aa6.74□□□□□ -1.33
LDLR-211ENST00000560173 NANOS2P60321 138 aaKnown RBP6.74□□□□□ -1.33
LDLR-211ENST00000560173 ARL6IP6Q8N6S5 226 aa6.74□□□□□ -1.33
LDLR-211ENST00000560173 SREK1IP1Q8N9Q2 155 aaPredicted RBP6.74□□□□□ -1.33
LDLR-211ENST00000560173 C11orf45Q8TAV5 145 aa6.74□□□□□ -1.33
LDLR-211ENST00000560173 ODF3Q96PU9 254 aa6.74□□□□□ -1.33
LDLR-211ENST00000560173 YTHDF2Q9Y5A9 579 aaKnown RBP6.74□□□□□ -1.33
LDLR-211ENST00000560173 ALMS1Q8TCU4 4167 aa6.74□□□□□ -1.33
LDLR-211ENST00000560173 CT45A10P0DMU9 189 aa6.73□□□□□ -1.33
LDLR-211ENST00000560173 S100PP25815 95 aa6.73□□□□□ -1.33
LDLR-211ENST00000560173 TSPOP30536 169 aa6.73□□□□□ -1.33
LDLR-211ENST00000560173 CDKN1BP46527 198 aa6.73□□□□□ -1.33
LDLR-211ENST00000560173 RANP62826 216 aaKnown RBP6.73□□□□□ -1.33
LDLR-211ENST00000560173 ERCC8Q13216 396 aa6.73□□□□□ -1.33
LDLR-211ENST00000560173 ADIRFQ15847 76 aa6.73□□□□□ -1.33
LDLR-211ENST00000560173 RNF212Q495C1 297 aa6.73□□□□□ -1.33
LDLR-211ENST00000560173 TMEM88Q6PEY1 159 aa6.73□□□□□ -1.33
LDLR-211ENST00000560173 SMIM12Q96EX1 92 aa6.73□□□□□ -1.33
LDLR-211ENST00000560173 TMEM208Q9BTX3 173 aa6.73□□□□□ -1.33
LDLR-211ENST00000560173 Q9H3A6 140 aa6.73□□□□□ -1.33
LDLR-211ENST00000560173 BIN3Q9NQY0 253 aa6.73□□□□□ -1.33
LDLR-211ENST00000560173 IGKV2-40A0A087WW87 121 aaPredicted RBP6.72□□□□□ -1.33
LDLR-211ENST00000560173 SERTM2A0A1B0GWG4 89 aa6.72□□□□□ -1.33
LDLR-211ENST00000560173 SCO2A0A1W2PP80 73 aa6.72□□□□□ -1.33
LDLR-211ENST00000560173 FBLL1A6NHQ2 334 aaKnown RBP6.72□□□□□ -1.33
LDLR-211ENST00000560173 K7EQM0 130 aa6.72□□□□□ -1.33
LDLR-211ENST00000560173 IGKV2D-40P01614 121 aaPredicted RBP6.72□□□□□ -1.33
LDLR-211ENST00000560173 LEPP41159 167 aa6.72□□□□□ -1.33
LDLR-211ENST00000560173 AKR1C3P42330 323 aa6.72□□□□□ -1.33
LDLR-211ENST00000560173 GNG4P50150 75 aa6.72□□□□□ -1.33
LDLR-211ENST00000560173 RPL23P62829 140 aaKnown RBP6.72□□□□□ -1.33
LDLR-211ENST00000560173 SUMO1P63165 101 aaKnown RBP6.72□□□□□ -1.33
LDLR-211ENST00000560173 RPL19P84098 196 aaKnown RBP6.72□□□□□ -1.33
LDLR-211ENST00000560173 KIR3DS1Q14943 382 aa6.72□□□□□ -1.33
LDLR-211ENST00000560173 RRN3P1Q2M238 152 aa6.72□□□□□ -1.33
LDLR-211ENST00000560173 GFI1BQ5VTD9 330 aa6.72□□□□□ -1.33
LDLR-211ENST00000560173 C9orf47Q6ZRZ4 202 aa6.72□□□□□ -1.33
LDLR-211ENST00000560173 CBLN2Q8IUK8 224 aa6.72□□□□□ -1.33
LDLR-211ENST00000560173 C5orf17Q8NAS9 161 aa6.72□□□□□ -1.33
LDLR-211ENST00000560173 FAM19A4Q96LR4 140 aa6.72□□□□□ -1.33
LDLR-211ENST00000560173 IMMP2LQ96T52 175 aa6.72□□□□□ -1.33
LDLR-211ENST00000560173 VGLL1Q99990 258 aa6.72□□□□□ -1.33
LDLR-211ENST00000560173 AGPAT4-IT1Q9H0P7 198 aa6.72□□□□□ -1.33
LDLR-211ENST00000560173 OTORQ9NRC9 128 aa6.72□□□□□ -1.33
LDLR-211ENST00000560173 CELA1Q9UNI1 258 aa6.72□□□□□ -1.33
LDLR-211ENST00000560173 TMEM189A5PLL7 270 aa6.71□□□□□ -1.34
LDLR-211ENST00000560173 NUPR2A6NF83 97 aa6.71□□□□□ -1.34
LDLR-211ENST00000560173 ZNF705GA8MUZ8 300 aaPredicted RBP6.71□□□□□ -1.34
LDLR-211ENST00000560173 H7BYZ3 331 aa6.71□□□□□ -1.34
LDLR-211ENST00000560173 RPL35P42766 123 aaKnown RBP6.71□□□□□ -1.34
LDLR-211ENST00000560173 CSN1S1P47710 185 aa6.71□□□□□ -1.34
LDLR-211ENST00000560173 KCNIP4Q6PIL6 250 aa6.71□□□□□ -1.34
LDLR-211ENST00000560173 CEMP1Q6PRD7 247 aaPredicted RBP6.71□□□□□ -1.34
LDLR-211ENST00000560173 LINC01551Q86U37 167 aa6.71□□□□□ -1.34
LDLR-211ENST00000560173 TMEM256Q8N2U0 113 aa6.71□□□□□ -1.34
LDLR-211ENST00000560173 CMTM2Q8TAZ6 248 aa6.71□□□□□ -1.34
LDLR-211ENST00000560173 PHLDA1Q8WV24 401 aaPredicted RBP6.71□□□□□ -1.34
LDLR-211ENST00000560173 LINC00477Q96M19 166 aa6.71□□□□□ -1.34
LDLR-211ENST00000560173 C20orf144Q9BQM9 153 aa6.71□□□□□ -1.34
LDLR-211ENST00000560173 ATG101Q9BSB4 218 aa6.71□□□□□ -1.34
LDLR-211ENST00000560173 TRAV9-1A0A075B6T8 112 aa6.7□□□□□ -1.34
LDLR-211ENST00000560173 RBAKDNA6NC62 111 aa6.7□□□□□ -1.34
LDLR-211ENST00000560173 PGPA6NDG6 321 aa6.7□□□□□ -1.34
LDLR-211ENST00000560173 KLLNB2CW77 178 aa6.7□□□□□ -1.34
LDLR-211ENST00000560173 GGTLC3B5MD39 225 aa6.7□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 69.1 ms