RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 LYRM2Q9NU23 88 aaPredicted RBP6.25□□□□□ -1.41
HDDC3-204ENST00000559834 MRPL16Q9NX20 251 aaKnown RBP6.25□□□□□ -1.41
HDDC3-204ENST00000559834 MSRB1Q9NZV6 116 aa6.25□□□□□ -1.41
HDDC3-204ENST00000559834 ZNF492Q9P255 531 aa6.25□□□□□ -1.41
HDDC3-204ENST00000559834 TP53TG3Q9ULZ0 132 aa6.25□□□□□ -1.41
HDDC3-204ENST00000559834 TNFRSF18Q9Y5U5 241 aa6.25□□□□□ -1.41
HDDC3-204ENST00000559834 IGKV2-40A0A087WW87 121 aaPredicted RBP6.24□□□□□ -1.41
HDDC3-204ENST00000559834 E5RGE8 158 aa6.24□□□□□ -1.41
HDDC3-204ENST00000559834 PLA2G10O15496 165 aa6.24□□□□□ -1.41
HDDC3-204ENST00000559834 IGKV2D-40P01614 121 aaPredicted RBP6.24□□□□□ -1.41
HDDC3-204ENST00000559834 ORM1P02763 201 aa6.24□□□□□ -1.41
HDDC3-204ENST00000559834 TCRBP04435 133 aa6.24□□□□□ -1.41
HDDC3-204ENST00000559834 CSN1S1P47710 185 aa6.24□□□□□ -1.41
HDDC3-204ENST00000559834 ZNF138P52744 262 aa6.24□□□□□ -1.41
HDDC3-204ENST00000559834 S100A10P60903 97 aa6.24□□□□□ -1.41
HDDC3-204ENST00000559834 FAM122CQ6P4D5 195 aa6.24□□□□□ -1.41
HDDC3-204ENST00000559834 OR51M1Q9H341 326 aa6.24□□□□□ -1.41
HDDC3-204ENST00000559834 C11orf1Q9H5F2 150 aa6.24□□□□□ -1.41
HDDC3-204ENST00000559834 TRAV6A0A075B6T7 132 aa6.23□□□□□ -1.41
HDDC3-204ENST00000559834 LYRM1O43325 122 aa6.23□□□□□ -1.41
HDDC3-204ENST00000559834 GCSHP23434 173 aa6.23□□□□□ -1.41
HDDC3-204ENST00000559834 FUSP35637 526 aaKnown RBP eCLIP6.23□□□□□ -1.41
HDDC3-204ENST00000559834 NKX2-5P52952 324 aaPredicted RBP6.23□□□□□ -1.41
HDDC3-204ENST00000559834 Q5VSD8 79 aa6.23□□□□□ -1.41
HDDC3-204ENST00000559834 MZT2BQ6NZ67 158 aa6.23□□□□□ -1.41
HDDC3-204ENST00000559834 SH2D6Q7Z4S9 175 aa6.23□□□□□ -1.41
HDDC3-204ENST00000559834 C10orf126Q8N4M7 172 aa6.23□□□□□ -1.41
HDDC3-204ENST00000559834 RASL10AQ92737 203 aa6.23□□□□□ -1.41
HDDC3-204ENST00000559834 TXNDC17Q9BRA2 123 aa6.23□□□□□ -1.41
HDDC3-204ENST00000559834 SPXQ9BT56 116 aa6.23□□□□□ -1.41
HDDC3-204ENST00000559834 SLC25A2Q9BXI2 301 aa6.23□□□□□ -1.41
HDDC3-204ENST00000559834 NPCDR1Q9BY65 106 aa6.23□□□□□ -1.41
HDDC3-204ENST00000559834 TRGV11A0A075B6L2 103 aa6.22□□□□□ -1.41
HDDC3-204ENST00000559834 IGSF23A1L1A6 192 aa6.22□□□□□ -1.41
HDDC3-204ENST00000559834 RBAKDNA6NC62 111 aa6.22□□□□□ -1.41
HDDC3-204ENST00000559834 C9JCJ5 164 aa6.22□□□□□ -1.41
HDDC3-204ENST00000559834 FAM229AH3BQW9 127 aa6.22□□□□□ -1.41
HDDC3-204ENST00000559834 K7EQD1 137 aa6.22□□□□□ -1.41
HDDC3-204ENST00000559834 DNAH10OSP0CZ25 163 aa6.22□□□□□ -1.41
HDDC3-204ENST00000559834 GYPEP15421 78 aa6.22□□□□□ -1.41
HDDC3-204ENST00000559834 KRTAP10-1P60331 282 aa6.22□□□□□ -1.41
HDDC3-204ENST00000559834 IL15RAQ13261 267 aa6.22□□□□□ -1.41
HDDC3-204ENST00000559834 RAB32Q13637 225 aa6.22□□□□□ -1.41
HDDC3-204ENST00000559834 ZNF266Q14584 549 aa6.22□□□□□ -1.41
HDDC3-204ENST00000559834 PRR9Q5T870 116 aa6.22□□□□□ -1.41
HDDC3-204ENST00000559834 FAM159AQ6UWV7 190 aa6.22□□□□□ -1.41
HDDC3-204ENST00000559834 OR10G4Q8NGN3 311 aa6.22□□□□□ -1.41
HDDC3-204ENST00000559834 FAM167A-AS1Q96KT0 104 aa6.22□□□□□ -1.41
HDDC3-204ENST00000559834 SEC22CQ9BRL7 303 aa6.22□□□□□ -1.41
HDDC3-204ENST00000559834 PAXXQ9BUH6 204 aa6.22□□□□□ -1.41
HDDC3-204ENST00000559834 SLC25A31Q9H0C2 315 aa6.22□□□□□ -1.41
HDDC3-204ENST00000559834 KCNIP2Q9NS61 270 aa6.22□□□□□ -1.41
HDDC3-204ENST00000559834 NUDT15Q9NV35 164 aa6.22□□□□□ -1.41
HDDC3-204ENST00000559834 MDFICQ9P1T7 246 aa6.22□□□□□ -1.41
HDDC3-204ENST00000559834 BOLA1Q9Y3E2 137 aa6.22□□□□□ -1.41
HDDC3-204ENST00000559834 ALG5Q9Y673 324 aa6.22□□□□□ -1.41
HDDC3-204ENST00000559834 FAM240BA0A1B0GVZ2 78 aa6.21□□□□□ -1.42
HDDC3-204ENST00000559834 PSCAO43653 123 aa6.21□□□□□ -1.42
HDDC3-204ENST00000559834 H2AFB2P0C5Z0 115 aa6.21□□□□□ -1.42
HDDC3-204ENST00000559834 SFTA3P0C7M3 94 aa6.21□□□□□ -1.42
HDDC3-204ENST00000559834 NHLH2Q02577 135 aa6.21□□□□□ -1.42
HDDC3-204ENST00000559834 GCSAMLQ5JQS6 135 aa6.21□□□□□ -1.42
HDDC3-204ENST00000559834 MUC21Q5SSG8 566 aa6.21□□□□□ -1.42
HDDC3-204ENST00000559834 Q6ZQT7 251 aa6.21□□□□□ -1.42
HDDC3-204ENST00000559834 MIR17HGQ75NE6 70 aa6.21□□□□□ -1.42
HDDC3-204ENST00000559834 ZNF479Q96JC4 524 aa6.21□□□□□ -1.42
HDDC3-204ENST00000559834 FAM210AQ96ND0 272 aa6.21□□□□□ -1.42
HDDC3-204ENST00000559834 LENEPQ9Y5L5 61 aa6.21□□□□□ -1.42
HDDC3-204ENST00000559834 C17orf112F2Z3M2 114 aa6.2□□□□□ -1.42
HDDC3-204ENST00000559834 SMR3BP02814 79 aaPredicted RBP6.2□□□□□ -1.42
HDDC3-204ENST00000559834 CRYGDP07320 174 aa6.2□□□□□ -1.42
HDDC3-204ENST00000559834 OR10J4P0C629 311 aa6.2□□□□□ -1.42
HDDC3-204ENST00000559834 RANP62826 216 aaKnown RBP6.2□□□□□ -1.42
HDDC3-204ENST00000559834 TMEM183BQ1AE95 376 aa6.2□□□□□ -1.42
HDDC3-204ENST00000559834 ZFP69Q49AA0 526 aa6.2□□□□□ -1.42
HDDC3-204ENST00000559834 Q6AWC8 147 aa6.2□□□□□ -1.42
HDDC3-204ENST00000559834 WFDC10BQ8IUB3 73 aa6.2□□□□□ -1.42
HDDC3-204ENST00000559834 TMEM183AQ8IXX5 376 aa6.2□□□□□ -1.42
HDDC3-204ENST00000559834 OR4C5Q8NGB2 326 aa6.2□□□□□ -1.42
HDDC3-204ENST00000559834 OR5C1Q8NGR4 320 aa6.2□□□□□ -1.42
HDDC3-204ENST00000559834 Q8TAT8 98 aa6.2□□□□□ -1.42
HDDC3-204ENST00000559834 THAP6Q8TBB0 222 aa6.2□□□□□ -1.42
HDDC3-204ENST00000559834 NTN5Q8WTR8 489 aaPredicted RBP6.2□□□□□ -1.42
HDDC3-204ENST00000559834 FXYD5Q96DB9 178 aa6.2□□□□□ -1.42
HDDC3-204ENST00000559834 LRP1BQ9NZR2 4599 aa6.2□□□□□ -1.42
HDDC3-204ENST00000559834 IGLV5-52A0A0A0MRZ9 124 aa6.19□□□□□ -1.42
HDDC3-204ENST00000559834 TRAV4A0A0B4J268 109 aa6.19□□□□□ -1.42
HDDC3-204ENST00000559834 IGHV3-38A0A0C4DH36 116 aa6.19□□□□□ -1.42
HDDC3-204ENST00000559834 INMT-MINDY4F8WBC2 141 aa6.19□□□□□ -1.42
HDDC3-204ENST00000559834 M0R2P5 195 aa6.19□□□□□ -1.42
HDDC3-204ENST00000559834 OR7C2O60412 319 aa6.19□□□□□ -1.42
HDDC3-204ENST00000559834 PFN1P07737 140 aaKnown RBP6.19□□□□□ -1.42
HDDC3-204ENST00000559834 TIRAPP58753 221 aa6.19□□□□□ -1.42
HDDC3-204ENST00000559834 IFITM2Q01629 132 aa6.19□□□□□ -1.42
HDDC3-204ENST00000559834 TMED6Q8WW62 240 aa6.19□□□□□ -1.42
HDDC3-204ENST00000559834 WDR61Q9GZS3 305 aaKnown RBP6.19□□□□□ -1.42
HDDC3-204ENST00000559834 TRAV8-6A0A0B4J262 113 aa6.18□□□□□ -1.42
HDDC3-204ENST00000559834 DIRC3C9JPN6 131 aa6.18□□□□□ -1.42
HDDC3-204ENST00000559834 CIDEAO60543 219 aa6.18□□□□□ -1.42
HDDC3-204ENST00000559834 PPT1P50897 306 aa6.18□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms