RNA–Protein interactions for RNA: ENST00000559711.5

USP3-213, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5 BASIC

Gene USP3, Length 1,693 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-213ENST00000559711 CITED2Q99967 270 aaPredicted RBP9.54□□□□□ -0.88
USP3-213ENST00000559711 RNF114Q9Y508 228 aa9.54□□□□□ -0.88
USP3-213ENST00000559711 NSD1Q96L73 2696 aaPredicted RBP9.53□□□□□ -0.88
USP3-213ENST00000559711 CSN3P07498 182 aa9.53□□□□□ -0.88
USP3-213ENST00000559711 ZNF705DP0CH99 300 aaPredicted RBP9.53□□□□□ -0.88
USP3-213ENST00000559711 ZNF705BP0CI00 300 aaPredicted RBP9.53□□□□□ -0.88
USP3-213ENST00000559711 RPS20P60866 119 aaKnown RBP9.53□□□□□ -0.88
USP3-213ENST00000559711 HIST1H1AQ02539 215 aaPredicted RBP9.53□□□□□ -0.88
USP3-213ENST00000559711 HIST2H2BDQ6DRA6 164 aa9.53□□□□□ -0.88
USP3-213ENST00000559711 ZNF575Q86XF7 245 aa9.53□□□□□ -0.88
USP3-213ENST00000559711 WFDC3Q8IUB2 231 aa9.53□□□□□ -0.88
USP3-213ENST00000559711 C11orf44Q8N8P7 122 aa9.53□□□□□ -0.88
USP3-213ENST00000559711 FAM19A4Q96LR4 140 aa9.53□□□□□ -0.88
USP3-213ENST00000559711 TCF21O43680 179 aa9.52□□□□□ -0.89
USP3-213ENST00000559711 HBBP68871 147 aa9.52□□□□□ -0.89
USP3-213ENST00000559711 GDF5OSQ5U4N7 250 aa9.52□□□□□ -0.89
USP3-213ENST00000559711 F6UB75 175 aa9.51□□□□□ -0.89
USP3-213ENST00000559711 CCL24O00175 119 aa9.51□□□□□ -0.89
USP3-213ENST00000559711 CRLF1O75462 422 aa9.51□□□□□ -0.89
USP3-213ENST00000559711 DEFB1P60022 68 aa9.51□□□□□ -0.89
USP3-213ENST00000559711 RAB4BP61018 213 aa9.51□□□□□ -0.89
USP3-213ENST00000559711 SNRPD3P62318 126 aaKnown RBP9.51□□□□□ -0.89
USP3-213ENST00000559711 PAFAH1B2P68402 229 aa9.51□□□□□ -0.89
USP3-213ENST00000559711 LINC01559Q495D7 138 aa9.51□□□□□ -0.89
USP3-213ENST00000559711 ZFAND2AQ8N6M9 145 aa9.51□□□□□ -0.89
USP3-213ENST00000559711 TRAV2A0A0B4J234 112 aa9.51□□□□□ -0.89
USP3-213ENST00000559711 A0A1B0GUT8 65 aa9.51□□□□□ -0.89
USP3-213ENST00000559711 CRISP2P16562 243 aa9.51□□□□□ -0.89
USP3-213ENST00000559711 TFPI2P48307 235 aa9.51□□□□□ -0.89
USP3-213ENST00000559711 APRG1Q8IVJ8 170 aa9.51□□□□□ -0.89
USP3-213ENST00000559711 SETD2Q9BYW2 2564 aaPredicted RBP9.51□□□□□ -0.89
USP3-213ENST00000559711 A0A1W2PRX2 142 aa9.5□□□□□ -0.89
USP3-213ENST00000559711 APCSP02743 223 aa9.5□□□□□ -0.89
USP3-213ENST00000559711 ORM1P02763 201 aa9.5□□□□□ -0.89
USP3-213ENST00000559711 ZNF688P0C7X2 276 aa9.5□□□□□ -0.89
USP3-213ENST00000559711 CAMPP49913 170 aa9.5□□□□□ -0.89
USP3-213ENST00000559711 FN1P02751 2386 aaKnown RBP9.49□□□□□ -0.89
USP3-213ENST00000559711 TMSB15BA0A087X1C1 80 aa9.49□□□□□ -0.89
USP3-213ENST00000559711 A0A1B0GW15 77 aa9.49□□□□□ -0.89
USP3-213ENST00000559711 ARMS2P0C7Q2 107 aa9.49□□□□□ -0.89
USP3-213ENST00000559711 IGLC6P0CF74 106 aa9.49□□□□□ -0.89
USP3-213ENST00000559711 SLAQ13239 276 aa9.49□□□□□ -0.89
USP3-213ENST00000559711 RIGQ13278 110 aa9.49□□□□□ -0.89
USP3-213ENST00000559711 DEFB114Q30KQ6 69 aa9.49□□□□□ -0.89
USP3-213ENST00000559711 PSMG4Q5JS54 123 aa9.49□□□□□ -0.89
USP3-213ENST00000559711 PRR9Q5T870 116 aa9.49□□□□□ -0.89
USP3-213ENST00000559711 GFI1BQ5VTD9 330 aa9.49□□□□□ -0.89
USP3-213ENST00000559711 HIST3H2BBQ8N257 126 aa9.49□□□□□ -0.89
USP3-213ENST00000559711 SIGLEC8Q9NYZ4 499 aa9.49□□□□□ -0.89
USP3-213ENST00000559711 C11orf21Q9P2W6 132 aa9.49□□□□□ -0.89
USP3-213ENST00000559711 IGKV3D-20A0A0C4DH25 116 aa9.48□□□□□ -0.89
USP3-213ENST00000559711 A0A0J9YX75 114 aa9.48□□□□□ -0.89
USP3-213ENST00000559711 IFITM10A6NMD0 228 aa9.48□□□□□ -0.89
USP3-213ENST00000559711 ADARB2-AS1A8MUL3 147 aa9.48□□□□□ -0.89
USP3-213ENST00000559711 LYZL1Q6UWQ5 148 aa9.48□□□□□ -0.89
USP3-213ENST00000559711 GATD1Q8NB37 220 aa9.48□□□□□ -0.89
USP3-213ENST00000559711 SETXQ7Z333 2677 aaKnown RBP9.48□□□□□ -0.89
USP3-213ENST00000559711 S100A8P05109 93 aa9.48□□□□□ -0.89
USP3-213ENST00000559711 CTRLP40313 264 aa9.48□□□□□ -0.89
USP3-213ENST00000559711 Q0VG73 95 aa9.48□□□□□ -0.89
USP3-213ENST00000559711 TMEM61Q8N0U2 210 aa9.48□□□□□ -0.89
USP3-213ENST00000559711 FER1L6-AS1Q8NA97 138 aa9.48□□□□□ -0.89
USP3-213ENST00000559711 ODF3Q96PU9 254 aa9.48□□□□□ -0.89
USP3-213ENST00000559711 TRAV25A0A0B4J276 109 aa9.47□□□□□ -0.89
USP3-213ENST00000559711 TRAV21A0A0B4J279 112 aa9.47□□□□□ -0.89
USP3-213ENST00000559711 KLLNB2CW77 178 aa9.47□□□□□ -0.89
USP3-213ENST00000559711 GPX1P07203 203 aa9.47□□□□□ -0.89
USP3-213ENST00000559711 AKR1D1P51857 326 aa9.47□□□□□ -0.89
USP3-213ENST00000559711 KIAA1644Q3SXP7 199 aa9.47□□□□□ -0.89
USP3-213ENST00000559711 DYNLRB2Q8TF09 96 aa9.47□□□□□ -0.89
USP3-213ENST00000559711 BORCS7Q96B45 105 aa9.47□□□□□ -0.89
USP3-213ENST00000559711 SSBP4Q9BWG4 385 aaPredicted RBP9.47□□□□□ -0.89
USP3-213ENST00000559711 CNFNQ9BYD5 112 aa9.47□□□□□ -0.89
USP3-213ENST00000559711 A0A1B0GUS0 222 aa9.46□□□□□ -0.89
USP3-213ENST00000559711 DUSP14O95147 198 aaKnown RBP9.46□□□□□ -0.89
USP3-213ENST00000559711 KRTAP10-3P60369 221 aa9.46□□□□□ -0.89
USP3-213ENST00000559711 EBLN2Q6P2I7 272 aa9.46□□□□□ -0.89
USP3-213ENST00000559711 FOXI2Q6ZQN5 318 aa9.46□□□□□ -0.89
USP3-213ENST00000559711 Q6ZQT7 251 aa9.46□□□□□ -0.89
USP3-213ENST00000559711 TPPP3Q9BW30 176 aa9.46□□□□□ -0.89
USP3-213ENST00000559711 GRIFINA4D1Z8 144 aa9.45□□□□□ -0.9
USP3-213ENST00000559711 F2Z2F3 143 aa9.45□□□□□ -0.9
USP3-213ENST00000559711 CD33P20138 364 aa9.45□□□□□ -0.9
USP3-213ENST00000559711 CD300EQ496F6 205 aaPredicted RBP9.45□□□□□ -0.9
USP3-213ENST00000559711 OR10J3Q5JRS4 329 aa9.45□□□□□ -0.9
USP3-213ENST00000559711 ZNF493Q6ZR52 646 aa9.45□□□□□ -0.9
USP3-213ENST00000559711 TP53TG3Q9ULZ0 132 aa9.45□□□□□ -0.9
USP3-213ENST00000559711 SRIP30626 198 aa9.45□□□□□ -0.9
USP3-213ENST00000559711 RNASE4P34096 147 aaKnown RBP9.45□□□□□ -0.9
USP3-213ENST00000559711 KIR3DS1Q14943 382 aa9.45□□□□□ -0.9
USP3-213ENST00000559711 NDUFA11Q86Y39 141 aa9.45□□□□□ -0.9
USP3-213ENST00000559711 SPAG8Q99932 426 aaPredicted RBP9.45□□□□□ -0.9
USP3-213ENST00000559711 ALKBH7Q9BT30 221 aaPredicted RBP9.45□□□□□ -0.9
USP3-213ENST00000559711 J3KRW8 73 aa9.44□□□□□ -0.9
USP3-213ENST00000559711 ESDP10768 282 aa9.44□□□□□ -0.9
USP3-213ENST00000559711 S100A2P29034 98 aa9.44□□□□□ -0.9
USP3-213ENST00000559711 LEPP41159 167 aa9.44□□□□□ -0.9
USP3-213ENST00000559711 PDZD11Q5EBL8 140 aa9.44□□□□□ -0.9
USP3-213ENST00000559711 TMEM256Q8N2U0 113 aa9.44□□□□□ -0.9
USP3-213ENST00000559711 C2CD3Q4AC94 2353 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 71.5 ms