RNA–Protein interactions for RNA: ENST00000558500.5

LRRC28-207, Transcript of leucine rich repeat containing 28, humanhuman

TSL 4

Gene LRRC28, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytosol, Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LRRC28-207ENST00000558500 K7EPK0 472 aa4.38□□□□□ -1.71
LRRC28-207ENST00000558500 WRBO00258 174 aa4.38□□□□□ -1.71
LRRC28-207ENST00000558500 SYNGR2O43760 224 aa4.38□□□□□ -1.71
LRRC28-207ENST00000558500 MED6O75586 246 aa4.38□□□□□ -1.71
LRRC28-207ENST00000558500 GPX1P07203 203 aa4.38□□□□□ -1.71
LRRC28-207ENST00000558500 CRISP2P16562 243 aa4.38□□□□□ -1.71
LRRC28-207ENST00000558500 SRPXP78539 464 aa4.38□□□□□ -1.71
LRRC28-207ENST00000558500 ERCC8Q13216 396 aa4.38□□□□□ -1.71
LRRC28-207ENST00000558500 OPCMLQ14982 345 aa4.38□□□□□ -1.71
LRRC28-207ENST00000558500 SPANXN5Q5MJ07 72 aa4.38□□□□□ -1.71
LRRC28-207ENST00000558500 PRR9Q5T870 116 aa4.38□□□□□ -1.71
LRRC28-207ENST00000558500 PXDC1Q5TGL8 231 aa4.38□□□□□ -1.71
LRRC28-207ENST00000558500 Q6ZQT7 251 aa4.38□□□□□ -1.71
LRRC28-207ENST00000558500 RASL10AQ92737 203 aa4.38□□□□□ -1.71
LRRC28-207ENST00000558500 MRPL53Q96EL3 112 aaKnown RBP4.38□□□□□ -1.71
LRRC28-207ENST00000558500 LINC00477Q96M19 166 aa4.38□□□□□ -1.71
LRRC28-207ENST00000558500 AGPAT4-IT1Q9H0P7 198 aa4.38□□□□□ -1.71
LRRC28-207ENST00000558500 STRAPQ9Y3F4 350 aaKnown RBP4.38□□□□□ -1.71
LRRC28-207ENST00000558500 TRAV4A0A0B4J268 109 aa4.37□□□□□ -1.71
LRRC28-207ENST00000558500 DUXBA0A1W2PPF3 345 aa4.37□□□□□ -1.71
LRRC28-207ENST00000558500 M0R3E3 92 aa4.37□□□□□ -1.71
LRRC28-207ENST00000558500 MBPP02686 304 aaPredicted RBP4.37□□□□□ -1.71
LRRC28-207ENST00000558500 PFN1P07737 140 aaKnown RBP4.37□□□□□ -1.71
LRRC28-207ENST00000558500 NMBP08949 121 aa4.37□□□□□ -1.71
LRRC28-207ENST00000558500 SLC25A6P12236 298 aa4.37□□□□□ -1.71
LRRC28-207ENST00000558500 ANXA3P12429 323 aa4.37□□□□□ -1.71
LRRC28-207ENST00000558500 SSBP1Q04837 148 aaKnown RBP4.37□□□□□ -1.71
LRRC28-207ENST00000558500 GUK1Q16774 197 aa4.37□□□□□ -1.71
LRRC28-207ENST00000558500 LELP1Q5T871 98 aa4.37□□□□□ -1.71
LRRC28-207ENST00000558500 ZFAND2AQ8N6M9 145 aa4.37□□□□□ -1.71
LRRC28-207ENST00000558500 C15orf40Q8WUR7 153 aa4.37□□□□□ -1.71
LRRC28-207ENST00000558500 YIPF6Q96EC8 236 aa4.37□□□□□ -1.71
LRRC28-207ENST00000558500 PRRT1Q99946 306 aa4.37□□□□□ -1.71
LRRC28-207ENST00000558500 EXTL2Q9UBQ6 330 aa4.37□□□□□ -1.71
LRRC28-207ENST00000558500 COX11Q9Y6N1 276 aa4.37□□□□□ -1.71
LRRC28-207ENST00000558500 PIGBOS1A0A0B4J2F0 54 aa4.36□□□□□ -1.71
LRRC28-207ENST00000558500 KRTAP9-7A8MTY7 169 aa4.36□□□□□ -1.71
LRRC28-207ENST00000558500 COX7A2P2O60397 106 aa4.36□□□□□ -1.71
LRRC28-207ENST00000558500 ZNF253O75346 499 aa4.36□□□□□ -1.71
LRRC28-207ENST00000558500 AKAIN1P0CW23 69 aa4.36□□□□□ -1.71
LRRC28-207ENST00000558500 GATA1P15976 413 aaPredicted RBP4.36□□□□□ -1.71
LRRC28-207ENST00000558500 SLC38A11Q08AI6 406 aa4.36□□□□□ -1.71
LRRC28-207ENST00000558500 CLVS1Q8IUQ0 354 aaPredicted RBP4.36□□□□□ -1.71
LRRC28-207ENST00000558500 OR4C5Q8NGB2 326 aa4.36□□□□□ -1.71
LRRC28-207ENST00000558500 ATP6V0E2Q8NHE4 81 aa4.36□□□□□ -1.71
LRRC28-207ENST00000558500 SCGB3A2Q96PL1 93 aa4.36□□□□□ -1.71
LRRC28-207ENST00000558500 SPXQ9BT56 116 aa4.36□□□□□ -1.71
LRRC28-207ENST00000558500 SRRQ9GZT4 340 aa4.36□□□□□ -1.71
LRRC28-207ENST00000558500 NPVFQ9HCQ7 196 aa4.36□□□□□ -1.71
LRRC28-207ENST00000558500 MUC2Q02817 5179 aa4.36□□□□□ -1.71
LRRC28-207ENST00000558500 IGHV3-16A0A0C4DH30 117 aa4.35□□□□□ -1.71
LRRC28-207ENST00000558500 FABP12A6NFH5 140 aa4.35□□□□□ -1.71
LRRC28-207ENST00000558500 ANKRD65E5RJM6 399 aa4.35□□□□□ -1.71
LRRC28-207ENST00000558500 FNDC10F2Z333 226 aa4.35□□□□□ -1.71
LRRC28-207ENST00000558500 GOSR2O14653 212 aa4.35□□□□□ -1.71
LRRC28-207ENST00000558500 SUMO2P61956 95 aaKnown RBP4.35□□□□□ -1.71
LRRC28-207ENST00000558500 RRAS2P62070 204 aaPredicted RBP4.35□□□□□ -1.71
LRRC28-207ENST00000558500 NCS1P62166 190 aa4.35□□□□□ -1.71
LRRC28-207ENST00000558500 POLR2GP62487 172 aaKnown RBP eCLIP4.35□□□□□ -1.71
LRRC28-207ENST00000558500 MUC21Q5SSG8 566 aa4.35□□□□□ -1.71
LRRC28-207ENST00000558500 C10orf113Q5VZT2 155 aa4.35□□□□□ -1.71
LRRC28-207ENST00000558500 DAZ4Q86SG3 579 aaKnown RBP4.35□□□□□ -1.71
LRRC28-207ENST00000558500 ZNF546Q86UE3 836 aa4.35□□□□□ -1.71
LRRC28-207ENST00000558500 DAZ3Q9NR90 486 aaKnown RBP4.35□□□□□ -1.71
LRRC28-207ENST00000558500 MGAT4CQ9UBM8 478 aa4.35□□□□□ -1.71
LRRC28-207ENST00000558500 RPH3ALQ9UNE2 315 aa4.35□□□□□ -1.71
LRRC28-207ENST00000558500 RABL2BQ9UNT1 228 aa4.35□□□□□ -1.71
LRRC28-207ENST00000558500 TRBV19A0A075B6N1 114 aa4.34□□□□□ -1.71
LRRC28-207ENST00000558500 IGKV2-40A0A087WW87 121 aaPredicted RBP4.34□□□□□ -1.71
LRRC28-207ENST00000558500 TRAV8-1A0A0A6YYK1 113 aa4.34□□□□□ -1.71
LRRC28-207ENST00000558500 GGTLC3B5MD39 225 aa4.34□□□□□ -1.71
LRRC28-207ENST00000558500 AGPAT2O15120 278 aa4.34□□□□□ -1.71
LRRC28-207ENST00000558500 NDUFB4O95168 129 aa4.34□□□□□ -1.71
LRRC28-207ENST00000558500 IGKV2D-40P01614 121 aaPredicted RBP4.34□□□□□ -1.71
LRRC28-207ENST00000558500 MRPS10P82664 201 aaKnown RBP4.34□□□□□ -1.71
LRRC28-207ENST00000558500 TMEM183BQ1AE95 376 aa4.34□□□□□ -1.71
LRRC28-207ENST00000558500 TMEM78Q5T7P6 136 aa4.34□□□□□ -1.71
LRRC28-207ENST00000558500 TMEM183AQ8IXX5 376 aa4.34□□□□□ -1.71
LRRC28-207ENST00000558500 SLC25A29Q8N8R3 303 aa4.34□□□□□ -1.71
LRRC28-207ENST00000558500 RAB2BQ8WUD1 216 aa4.34□□□□□ -1.71
LRRC28-207ENST00000558500 SMIM4Q8WVI0 70 aa4.34□□□□□ -1.71
LRRC28-207ENST00000558500 RMI2Q96E14 147 aa4.34□□□□□ -1.71
LRRC28-207ENST00000558500 CTDSP1Q9GZU7 261 aa4.34□□□□□ -1.71
LRRC28-207ENST00000558500 GTSF1LQ9H1H1 148 aa4.34□□□□□ -1.71
LRRC28-207ENST00000558500 PSENENQ9NZ42 101 aa4.34□□□□□ -1.71
LRRC28-207ENST00000558500 CCDC59Q9P031 241 aaKnown RBP4.34□□□□□ -1.71
LRRC28-207ENST00000558500 SCP2D1Q9UJQ7 156 aa4.34□□□□□ -1.71
LRRC28-207ENST00000558500 PRELID1Q9Y255 219 aa4.34□□□□□ -1.71
LRRC28-207ENST00000558500 IGKV2D-24A0A075B6R9 120 aa4.33□□□□□ -1.72
LRRC28-207ENST00000558500 TRBV7-9A0A0J9YWB2 115 aa4.33□□□□□ -1.72
LRRC28-207ENST00000558500 HIST1H1EP10412 219 aaKnown RBP4.33□□□□□ -1.72
LRRC28-207ENST00000558500 UBE2MP61081 183 aaKnown RBP4.33□□□□□ -1.72
LRRC28-207ENST00000558500 VBP1P61758 197 aa4.33□□□□□ -1.72
LRRC28-207ENST00000558500 RHOHQ15669 191 aa4.33□□□□□ -1.72
LRRC28-207ENST00000558500 VWC2Q2TAL6 325 aa4.33□□□□□ -1.72
LRRC28-207ENST00000558500 FAM122CQ6P4D5 195 aa4.33□□□□□ -1.72
LRRC28-207ENST00000558500 TMEM14EPQ6UXP3 125 aa4.33□□□□□ -1.72
LRRC28-207ENST00000558500 EXOC3-AS1Q8N2X6 119 aa4.33□□□□□ -1.72
LRRC28-207ENST00000558500 HSD17B11Q8NBQ5 300 aa4.33□□□□□ -1.72
LRRC28-207ENST00000558500 AP3S1Q92572 193 aa4.33□□□□□ -1.72
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms