RNA–Protein interactions for RNA: ENST00000558157.5

USP3-206, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,439 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-206ENST00000558157 IGHV3OR15-7A0A075B7D8 119 aa8.52□□□□□ -1.05
USP3-206ENST00000558157 TMEM213A2RRL7 107 aa8.52□□□□□ -1.05
USP3-206ENST00000558157 GAGE12JA6NER3 117 aa8.52□□□□□ -1.05
USP3-206ENST00000558157 PRSS29PA6NIE9 313 aa8.52□□□□□ -1.05
USP3-206ENST00000558157 M0QXV9 152 aa8.52□□□□□ -1.05
USP3-206ENST00000558157 RHODO00212 210 aa8.52□□□□□ -1.05
USP3-206ENST00000558157 GAGE7O76087 117 aa8.52□□□□□ -1.05
USP3-206ENST00000558157 GAGE12FP0CL80 117 aa8.52□□□□□ -1.05
USP3-206ENST00000558157 GAGE12GP0CL81 117 aa8.52□□□□□ -1.05
USP3-206ENST00000558157 GAGE12IP0CL82 117 aa8.52□□□□□ -1.05
USP3-206ENST00000558157 ASIPP42127 132 aa8.52□□□□□ -1.05
USP3-206ENST00000558157 CRIP1P50238 77 aa8.52□□□□□ -1.05
USP3-206ENST00000558157 GAGE4Q13068 117 aa8.52□□□□□ -1.05
USP3-206ENST00000558157 FAM201AQ5SY85 155 aa8.52□□□□□ -1.05
USP3-206ENST00000558157 ZNRF1Q8ND25 227 aa8.52□□□□□ -1.05
USP3-206ENST00000558157 RPEQ96AT9 228 aa8.52□□□□□ -1.05
USP3-206ENST00000558157 RNF7Q9UBF6 113 aa8.52□□□□□ -1.05
USP3-206ENST00000558157 RPUSD1Q9UJJ7 312 aaKnown RBP8.52□□□□□ -1.05
USP3-206ENST00000558157 FAM208BQ5VWN6 2430 aa8.52□□□□□ -1.05
USP3-206ENST00000558157 TANC2Q9HCD6 1990 aa8.52□□□□□ -1.05
USP3-206ENST00000558157 ABCA4P78363 2273 aa8.51□□□□□ -1.05
USP3-206ENST00000558157 TNFRSF1AP19438 455 aa8.51□□□□□ -1.05
USP3-206ENST00000558157 FXYD7P58549 80 aa8.51□□□□□ -1.05
USP3-206ENST00000558157 RPL32P62910 135 aaKnown RBP8.51□□□□□ -1.05
USP3-206ENST00000558157 HERV-K104P63124 156 aa8.51□□□□□ -1.05
USP3-206ENST00000558157 PLGLAQ15195 96 aa8.51□□□□□ -1.05
USP3-206ENST00000558157 UTF1Q5T230 341 aa8.51□□□□□ -1.05
USP3-206ENST00000558157 Q6Q795 121 aa8.51□□□□□ -1.05
USP3-206ENST00000558157 OR4C13Q8NGP0 309 aa8.51□□□□□ -1.05
USP3-206ENST00000558157 FOXC2Q99958 501 aa8.51□□□□□ -1.05
USP3-206ENST00000558157 RAI1Q7Z5J4 1906 aaPredicted RBP8.51□□□□□ -1.05
USP3-206ENST00000558157 CGB1A6NKQ9 187 aa8.51□□□□□ -1.05
USP3-206ENST00000558157 LHBP01229 141 aa8.51□□□□□ -1.05
USP3-206ENST00000558157 RBP4P02753 201 aa8.51□□□□□ -1.05
USP3-206ENST00000558157 UBE2D3P61077 147 aa8.51□□□□□ -1.05
USP3-206ENST00000558157 UBE2D2P62837 147 aa8.51□□□□□ -1.05
USP3-206ENST00000558157 EXOC3-AS1Q8N2X6 119 aa8.51□□□□□ -1.05
USP3-206ENST00000558157 MAPKAPK5-AS1Q8N8E1 139 aa8.51□□□□□ -1.05
USP3-206ENST00000558157 TRBV19A0A075B6N1 114 aa8.5□□□□□ -1.05
USP3-206ENST00000558157 E7EUB6 86 aa8.5□□□□□ -1.05
USP3-206ENST00000558157 SRSF2Q01130 221 aaKnown RBP8.5□□□□□ -1.05
USP3-206ENST00000558157 C11orf71Q6IPW1 123 aa8.5□□□□□ -1.05
USP3-206ENST00000558157 UBTD1Q9HAC8 227 aa8.5□□□□□ -1.05
USP3-206ENST00000558157 LRBAP50851 2863 aa8.5□□□□□ -1.05
USP3-206ENST00000558157 MYMXA0A1B0GTQ4 84 aa8.5□□□□□ -1.05
USP3-206ENST00000558157 NHLRC4P0CG21 123 aaPredicted RBP8.5□□□□□ -1.05
USP3-206ENST00000558157 PPIFP30405 207 aaKnown RBP8.5□□□□□ -1.05
USP3-206ENST00000558157 C1orf122Q6ZSJ8 110 aa8.5□□□□□ -1.05
USP3-206ENST00000558157 CARD19Q96LW7 228 aa8.5□□□□□ -1.05
USP3-206ENST00000558157 CNFNQ9BYD5 112 aa8.5□□□□□ -1.05
USP3-206ENST00000558157 A0A087WX48 190 aa8.49□□□□□ -1.05
USP3-206ENST00000558157 CENPVL3A0A0U1RRI6 287 aa8.49□□□□□ -1.05
USP3-206ENST00000558157 H3BTX0 84 aa8.49□□□□□ -1.05
USP3-206ENST00000558157 WFDC3Q8IUB2 231 aa8.49□□□□□ -1.05
USP3-206ENST00000558157 MYOZ3Q8TDC0 251 aa8.49□□□□□ -1.05
USP3-206ENST00000558157 GLMPQ8WWB7 406 aa8.49□□□□□ -1.05
USP3-206ENST00000558157 COL12A1Q99715 3063 aa8.49□□□□□ -1.05
USP3-206ENST00000558157 TMEM160Q9NX00 188 aa8.49□□□□□ -1.05
USP3-206ENST00000558157 TNFRSF18Q9Y5U5 241 aa8.49□□□□□ -1.05
USP3-206ENST00000558157 TNCP24821 2201 aa8.49□□□□□ -1.05
USP3-206ENST00000558157 TRAV40A0A0B4J280 105 aa8.49□□□□□ -1.05
USP3-206ENST00000558157 A8MWV9 139 aa8.49□□□□□ -1.05
USP3-206ENST00000558157 UBE2D1P51668 147 aa8.49□□□□□ -1.05
USP3-206ENST00000558157 NDUFV3P56181 108 aaKnown RBP8.49□□□□□ -1.05
USP3-206ENST00000558157 GAGE2BQ13066 116 aa8.49□□□□□ -1.05
USP3-206ENST00000558157 GAGE2EQ4V326 116 aa8.49□□□□□ -1.05
USP3-206ENST00000558157 SIGLEC15Q6ZMC9 328 aa8.49□□□□□ -1.05
USP3-206ENST00000558157 DTX2Q86UW9 622 aa8.49□□□□□ -1.05
USP3-206ENST00000558157 Q8N8P6 123 aa8.49□□□□□ -1.05
USP3-206ENST00000558157 GAGE2DQ9UEU5 116 aa8.49□□□□□ -1.05
USP3-206ENST00000558157 IGHV3-48P01763 117 aa8.48□□□□□ -1.05
USP3-206ENST00000558157 DEFB108BQ8NET1 73 aa8.48□□□□□ -1.05
USP3-206ENST00000558157 CCL17Q92583 94 aa8.48□□□□□ -1.05
USP3-206ENST00000558157 MRPL35Q9NZE8 188 aaKnown RBP8.48□□□□□ -1.05
USP3-206ENST00000558157 TRAV12-1A0A0B4J245 112 aa8.48□□□□□ -1.05
USP3-206ENST00000558157 A0A1W2PPI3 338 aa8.48□□□□□ -1.05
USP3-206ENST00000558157 FABP5P3A8MUU1 101 aa8.48□□□□□ -1.05
USP3-206ENST00000558157 TMEM178BH3BS89 294 aa8.48□□□□□ -1.05
USP3-206ENST00000558157 K7EMI3 77 aa8.48□□□□□ -1.05
USP3-206ENST00000558157 PSMB2P49721 201 aa8.48□□□□□ -1.05
USP3-206ENST00000558157 PDE6HQ13956 83 aa8.48□□□□□ -1.05
USP3-206ENST00000558157 VMA21Q3ZAQ7 101 aa8.48□□□□□ -1.05
USP3-206ENST00000558157 OR11H6Q8NGC7 330 aa8.48□□□□□ -1.05
USP3-206ENST00000558157 MRPL20Q9BYC9 149 aaKnown RBP8.48□□□□□ -1.05
USP3-206ENST00000558157 LYNX1G3V0Z9 82 aa8.47□□□□□ -1.05
USP3-206ENST00000558157 SMKR1H3BMG3 65 aa8.47□□□□□ -1.05
USP3-206ENST00000558157 SH2D1AO60880 128 aa8.47□□□□□ -1.05
USP3-206ENST00000558157 TNFRSF6BO95407 300 aa8.47□□□□□ -1.05
USP3-206ENST00000558157 IGLC6P0CF74 106 aa8.47□□□□□ -1.05
USP3-206ENST00000558157 LYNX1P0DP58 116 aa8.47□□□□□ -1.05
USP3-206ENST00000558157 PLA2G2AP14555 144 aa8.47□□□□□ -1.05
USP3-206ENST00000558157 TEX36Q5VZQ5 186 aa8.47□□□□□ -1.05
USP3-206ENST00000558157 DUX4L9Q6RFH8 374 aaPredicted RBP8.47□□□□□ -1.05
USP3-206ENST00000558157 RNF185Q96GF1 192 aa8.47□□□□□ -1.05
USP3-206ENST00000558157 FBXL15Q9H469 300 aa8.47□□□□□ -1.05
USP3-206ENST00000558157 UTP20O75691 2785 aaKnown RBP8.47□□□□□ -1.05
USP3-206ENST00000558157 CLEC3BP05452 202 aa8.46□□□□□ -1.05
USP3-206ENST00000558157 IFITM1P13164 125 aa8.46□□□□□ -1.05
USP3-206ENST00000558157 DSCAMO60469 2012 aa8.46□□□□□ -1.05
USP3-206ENST00000558157 DCHS2Q6V1P9 2916 aa8.46□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms