RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 C12orf54Q6X4T0 127 aa9.89□□□□□ -0.83
LDLR-207ENST00000558013 TNFRSF6BO95407 300 aa9.89□□□□□ -0.83
LDLR-207ENST00000558013 LEPP41159 167 aa9.89□□□□□ -0.83
LDLR-207ENST00000558013 NMUP48645 174 aa9.89□□□□□ -0.83
LDLR-207ENST00000558013 GOSR1O95249 250 aa9.88□□□□□ -0.83
LDLR-207ENST00000558013 TM4SF20Q53R12 229 aa9.88□□□□□ -0.83
LDLR-207ENST00000558013 C8orf86Q6ZUL3 223 aa9.88□□□□□ -0.83
LDLR-207ENST00000558013 PRR9Q5T870 116 aa9.88□□□□□ -0.83
LDLR-207ENST00000558013 LCNL1Q6ZST4 164 aa9.88□□□□□ -0.83
LDLR-207ENST00000558013 CACNA1AO00555 2505 aa9.87□□□□□ -0.83
LDLR-207ENST00000558013 K7EP13 123 aa9.87□□□□□ -0.83
LDLR-207ENST00000558013 NPFFO15130 113 aa9.87□□□□□ -0.83
LDLR-207ENST00000558013 EFNA4P52798 201 aa9.87□□□□□ -0.83
LDLR-207ENST00000558013 UNQ9165/PRO28630Q6UXU0 137 aa9.87□□□□□ -0.83
LDLR-207ENST00000558013 IGKV3-7A0A075B6H7 116 aa9.87□□□□□ -0.83
LDLR-207ENST00000558013 IGKV2D-26A0A0A0MRZ7 120 aa9.87□□□□□ -0.83
LDLR-207ENST00000558013 PCP4P48539 62 aa9.87□□□□□ -0.83
LDLR-207ENST00000558013 LGALS9BQ3B8N2 356 aa9.87□□□□□ -0.83
LDLR-207ENST00000558013 LGALS9CQ6DKI2 356 aa9.87□□□□□ -0.83
LDLR-207ENST00000558013 PIEZO1Q92508 2521 aa9.87□□□□□ -0.83
LDLR-207ENST00000558013 CREBBPQ92793 2442 aa9.87□□□□□ -0.83
LDLR-207ENST00000558013 SFTPCP11686 197 aa9.87□□□□□ -0.83
LDLR-207ENST00000558013 RPS20P60866 119 aaKnown RBP9.87□□□□□ -0.83
LDLR-207ENST00000558013 RBX1P62877 108 aa9.87□□□□□ -0.83
LDLR-207ENST00000558013 TMEM97Q5BJF2 176 aa9.87□□□□□ -0.83
LDLR-207ENST00000558013 C5orf56Q8N8D9 126 aa9.87□□□□□ -0.83
LDLR-207ENST00000558013 C20orf173Q96LM9 149 aa9.87□□□□□ -0.83
LDLR-207ENST00000558013 COL25A1Q9BXS0 654 aaPredicted RBP9.87□□□□□ -0.83
LDLR-207ENST00000558013 ZFYVE26Q68DK2 2539 aa9.86□□□□□ -0.83
LDLR-207ENST00000558013 DOPEY2Q9Y3R5 2298 aa9.86□□□□□ -0.83
LDLR-207ENST00000558013 C7orf71A4D174 169 aa9.86□□□□□ -0.83
LDLR-207ENST00000558013 FBLL1A6NHQ2 334 aaKnown RBP9.86□□□□□ -0.83
LDLR-207ENST00000558013 LINC01559Q495D7 138 aa9.86□□□□□ -0.83
LDLR-207ENST00000558013 UFC1Q9Y3C8 167 aa9.86□□□□□ -0.83
LDLR-207ENST00000558013 SCGB2A1O75556 95 aa9.86□□□□□ -0.83
LDLR-207ENST00000558013 CNFNQ9BYD5 112 aa9.86□□□□□ -0.83
LDLR-207ENST00000558013 MAP1LC3AQ9H492 121 aa9.86□□□□□ -0.83
LDLR-207ENST00000558013 IGSF10Q6WRI0 2623 aa9.86□□□□□ -0.83
LDLR-207ENST00000558013 SMAD7O15105 426 aaKnown RBP9.85□□□□□ -0.83
LDLR-207ENST00000558013 IGHV3-11P01762 117 aa9.85□□□□□ -0.83
LDLR-207ENST00000558013 KIR3DS1Q14943 382 aa9.85□□□□□ -0.83
LDLR-207ENST00000558013 LY6EQ16553 131 aa9.85□□□□□ -0.83
LDLR-207ENST00000558013 IGHV7-4-1A0A0J9YVY3 117 aa9.85□□□□□ -0.83
LDLR-207ENST00000558013 K7EMI3 77 aa9.85□□□□□ -0.83
LDLR-207ENST00000558013 BOD1L2Q8IYS8 172 aa9.85□□□□□ -0.83
LDLR-207ENST00000558013 PIFOQ8TCI5 191 aa9.85□□□□□ -0.83
LDLR-207ENST00000558013 TMEM158Q8WZ71 300 aa9.85□□□□□ -0.83
LDLR-207ENST00000558013 METTL26Q96S19 204 aa9.85□□□□□ -0.83
LDLR-207ENST00000558013 MXRA5Q9NR99 2828 aa9.85□□□□□ -0.83
LDLR-207ENST00000558013 CD5LO43866 347 aa9.85□□□□□ -0.83
LDLR-207ENST00000558013 UCNP55089 124 aa9.85□□□□□ -0.83
LDLR-207ENST00000558013 RNF151Q2KHN1 245 aa9.85□□□□□ -0.83
LDLR-207ENST00000558013 TMEM78Q5T7P6 136 aa9.85□□□□□ -0.83
LDLR-207ENST00000558013 Q6ZS46 218 aa9.85□□□□□ -0.83
LDLR-207ENST00000558013 TMEM190Q8WZ59 177 aa9.85□□□□□ -0.83
LDLR-207ENST00000558013 RAB37Q96AX2 223 aa9.85□□□□□ -0.83
LDLR-207ENST00000558013 EEF1AKMT3Q96AZ1 226 aa9.85□□□□□ -0.83
LDLR-207ENST00000558013 PRSS1P07477 247 aa9.84□□□□□ -0.83
LDLR-207ENST00000558013 H3BVH4 76 aa9.84□□□□□ -0.83
LDLR-207ENST00000558013 IGHV4-39P01824 125 aa9.84□□□□□ -0.83
LDLR-207ENST00000558013 ATP5G2Q06055 141 aa9.84□□□□□ -0.83
LDLR-207ENST00000558013 ARL6IP6Q8N6S5 226 aa9.84□□□□□ -0.83
LDLR-207ENST00000558013 GLMPQ8WWB7 406 aa9.84□□□□□ -0.83
LDLR-207ENST00000558013 SORL1Q92673 2214 aa9.83□□□□□ -0.84
LDLR-207ENST00000558013 TRAV40A0A0B4J280 105 aa9.83□□□□□ -0.84
LDLR-207ENST00000558013 F6UB75 175 aa9.83□□□□□ -0.84
LDLR-207ENST00000558013 DEFB104AQ8WTQ1 72 aa9.83□□□□□ -0.84
LDLR-207ENST00000558013 C16orf92Q96LL3 132 aa9.83□□□□□ -0.84
LDLR-207ENST00000558013 HHLA3Q9XRX5 114 aa9.83□□□□□ -0.84
LDLR-207ENST00000558013 TRAV41A0A0B4J266 112 aa9.83□□□□□ -0.84
LDLR-207ENST00000558013 ODF1Q14990 250 aa9.83□□□□□ -0.84
LDLR-207ENST00000558013 ITLN2Q8WWU7 325 aaPredicted RBP9.83□□□□□ -0.84
LDLR-207ENST00000558013 JMJD8Q96S16 334 aa9.83□□□□□ -0.84
LDLR-207ENST00000558013 SLC50A1Q9BRV3 221 aa9.83□□□□□ -0.84
LDLR-207ENST00000558013 KLK15Q9H2R5 256 aa9.83□□□□□ -0.84
LDLR-207ENST00000558013 IGHV4-38-2P0DP08 117 aa9.82□□□□□ -0.84
LDLR-207ENST00000558013 GNLYP22749 145 aa9.82□□□□□ -0.84
LDLR-207ENST00000558013 GPHB5Q86YW7 130 aa9.82□□□□□ -0.84
LDLR-207ENST00000558013 FOXC2Q99958 501 aa9.82□□□□□ -0.84
LDLR-207ENST00000558013 EDN2P20800 178 aa9.82□□□□□ -0.84
LDLR-207ENST00000558013 FCER1GP30273 86 aa9.82□□□□□ -0.84
LDLR-207ENST00000558013 ADAMTSL5Q6ZMM2 481 aa9.82□□□□□ -0.84
LDLR-207ENST00000558013 GTSCR1Q86UQ5 136 aa9.82□□□□□ -0.84
LDLR-207ENST00000558013 IGLV2-18A0A075B6J9 118 aa9.82□□□□□ -0.84
LDLR-207ENST00000558013 IGHV4-61A0A0C4DH41 118 aa9.82□□□□□ -0.84
LDLR-207ENST00000558013 A1L4Q6 167 aa9.82□□□□□ -0.84
LDLR-207ENST00000558013 SRD5A1P18405 259 aa9.82□□□□□ -0.84
LDLR-207ENST00000558013 OR2K2Q8NGT1 345 aa9.82□□□□□ -0.84
LDLR-207ENST00000558013 PPP1R14DQ9NXH3 145 aa9.82□□□□□ -0.84
LDLR-207ENST00000558013 CBY1Q9Y3M2 126 aa9.82□□□□□ -0.84
LDLR-207ENST00000558013 TRBV7-1A0A0A6YYK4 115 aa9.81□□□□□ -0.84
LDLR-207ENST00000558013 RBAKDNA6NC62 111 aa9.81□□□□□ -0.84
LDLR-207ENST00000558013 RPL11P62913 178 aaKnown RBP9.81□□□□□ -0.84
LDLR-207ENST00000558013 BLCAPP62952 87 aa9.81□□□□□ -0.84
LDLR-207ENST00000558013 SPANXN1Q5VSR9 72 aa9.81□□□□□ -0.84
LDLR-207ENST00000558013 U3KQE9 123 aa9.81□□□□□ -0.84
LDLR-207ENST00000558013 H3BUT2 72 aa9.81□□□□□ -0.84
LDLR-207ENST00000558013 PPBPP02775 128 aa9.81□□□□□ -0.84
LDLR-207ENST00000558013 ARL3P36405 182 aa9.81□□□□□ -0.84
LDLR-207ENST00000558013 NRACQ8N912 160 aa9.81□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms