RNA–Protein interactions for RNA: ENST00000557529.1

SHMT2-233, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,369 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-233ENST00000557529 HIST1H2BOP23527 126 aa9.37□□□□□ -0.91
SHMT2-233ENST00000557529 HIST1H2BBP33778 126 aa9.37□□□□□ -0.91
SHMT2-233ENST00000557529 HIST1H2BDP58876 126 aa9.37□□□□□ -0.91
SHMT2-233ENST00000557529 HIST1H2BCP62807 126 aa9.37□□□□□ -0.91
SHMT2-233ENST00000557529 FABP9Q0Z7S8 132 aa9.37□□□□□ -0.91
SHMT2-233ENST00000557529 HIST2H2BEQ16778 126 aa9.37□□□□□ -0.91
SHMT2-233ENST00000557529 PSMG4Q5JS54 123 aa9.37□□□□□ -0.91
SHMT2-233ENST00000557529 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.37□□□□□ -0.91
SHMT2-233ENST00000557529 HIST2H2BDQ6DRA6 164 aa9.37□□□□□ -0.91
SHMT2-233ENST00000557529 NDUFA11Q86Y39 141 aa9.37□□□□□ -0.91
SHMT2-233ENST00000557529 HIST1H2BHQ93079 126 aa9.37□□□□□ -0.91
SHMT2-233ENST00000557529 HIST1H2BNQ99877 126 aa9.37□□□□□ -0.91
SHMT2-233ENST00000557529 HIST1H2BMQ99879 126 aa9.37□□□□□ -0.91
SHMT2-233ENST00000557529 FN1P02751 2386 aaKnown RBP9.36□□□□□ -0.91
SHMT2-233ENST00000557529 GZMBP10144 247 aa9.36□□□□□ -0.91
SHMT2-233ENST00000557529 DEFB114Q30KQ6 69 aa9.36□□□□□ -0.91
SHMT2-233ENST00000557529 LINC01559Q495D7 138 aa9.36□□□□□ -0.91
SHMT2-233ENST00000557529 EBLN2Q6P2I7 272 aa9.36□□□□□ -0.91
SHMT2-233ENST00000557529 BORCS7Q96B45 105 aa9.36□□□□□ -0.91
SHMT2-233ENST00000557529 PGLYRP4Q96LB8 373 aa9.36□□□□□ -0.91
SHMT2-233ENST00000557529 FAM19A4Q96LR4 140 aa9.36□□□□□ -0.91
SHMT2-233ENST00000557529 MRPL18Q9H0U6 180 aaKnown RBP9.36□□□□□ -0.91
SHMT2-233ENST00000557529 A0A0J9YX75 114 aa9.35□□□□□ -0.91
SHMT2-233ENST00000557529 A0A1B0GW15 77 aa9.35□□□□□ -0.91
SHMT2-233ENST00000557529 A0A1B0GXF2 115 aa9.35□□□□□ -0.91
SHMT2-233ENST00000557529 C5orf52A6NGY3 159 aa9.35□□□□□ -0.91
SHMT2-233ENST00000557529 ADARB2-AS1A8MUL3 147 aa9.35□□□□□ -0.91
SHMT2-233ENST00000557529 F6UB75 175 aa9.35□□□□□ -0.91
SHMT2-233ENST00000557529 DUSP14O95147 198 aaKnown RBP9.35□□□□□ -0.91
SHMT2-233ENST00000557529 ORM1P02763 201 aa9.35□□□□□ -0.91
SHMT2-233ENST00000557529 S100A8P05109 93 aa9.35□□□□□ -0.91
SHMT2-233ENST00000557529 CRISP2P16562 243 aa9.35□□□□□ -0.91
SHMT2-233ENST00000557529 RAB4BP61018 213 aa9.35□□□□□ -0.91
SHMT2-233ENST00000557529 HBBP68871 147 aa9.35□□□□□ -0.91
SHMT2-233ENST00000557529 TMEM136Q6ZRR5 245 aa9.35□□□□□ -0.91
SHMT2-233ENST00000557529 APRG1Q8IVJ8 170 aa9.35□□□□□ -0.91
SHMT2-233ENST00000557529 TMEM61Q8N0U2 210 aa9.35□□□□□ -0.91
SHMT2-233ENST00000557529 ZFAND2AQ8N6M9 145 aa9.35□□□□□ -0.91
SHMT2-233ENST00000557529 ODF3Q96PU9 254 aa9.35□□□□□ -0.91
SHMT2-233ENST00000557529 SPAG8Q99932 426 aaPredicted RBP9.35□□□□□ -0.91
SHMT2-233ENST00000557529 NF1P21359 2839 aa9.34□□□□□ -0.91
SHMT2-233ENST00000557529 TRAV21A0A0B4J279 112 aa9.34□□□□□ -0.91
SHMT2-233ENST00000557529 A0A1B0GUT8 65 aa9.34□□□□□ -0.91
SHMT2-233ENST00000557529 OR4C46A6NHA9 309 aa9.34□□□□□ -0.91
SHMT2-233ENST00000557529 NDUFA6P56556 154 aa9.34□□□□□ -0.91
SHMT2-233ENST00000557529 DEFB1P60022 68 aa9.34□□□□□ -0.91
SHMT2-233ENST00000557529 SNRPEP62304 92 aaKnown RBP9.34□□□□□ -0.91
SHMT2-233ENST00000557529 RIGQ13278 110 aa9.34□□□□□ -0.91
SHMT2-233ENST00000557529 NSUN5P1Q3KNT7 163 aa9.34□□□□□ -0.91
SHMT2-233ENST00000557529 FOXI2Q6ZQN5 318 aa9.34□□□□□ -0.91
SHMT2-233ENST00000557529 TMSB15BA0A087X1C1 80 aa9.33□□□□□ -0.92
SHMT2-233ENST00000557529 GPX1P07203 203 aa9.33□□□□□ -0.92
SHMT2-233ENST00000557529 FRMD6-AS1P0C7T7 363 aa9.33□□□□□ -0.92
SHMT2-233ENST00000557529 LEPP41159 167 aa9.33□□□□□ -0.92
SHMT2-233ENST00000557529 CD300EQ496F6 205 aaPredicted RBP9.33□□□□□ -0.92
SHMT2-233ENST00000557529 APCSP02743 223 aa9.32□□□□□ -0.92
SHMT2-233ENST00000557529 TSPOP30536 169 aa9.32□□□□□ -0.92
SHMT2-233ENST00000557529 CTRLP40313 264 aa9.32□□□□□ -0.92
SHMT2-233ENST00000557529 CAMPP49913 170 aa9.32□□□□□ -0.92
SHMT2-233ENST00000557529 KRTAP10-3P60369 221 aa9.32□□□□□ -0.92
SHMT2-233ENST00000557529 FER1L6-AS1Q8NA97 138 aa9.32□□□□□ -0.92
SHMT2-233ENST00000557529 KLLNB2CW77 178 aa9.31□□□□□ -0.92
SHMT2-233ENST00000557529 UBE2CO00762 179 aa9.31□□□□□ -0.92
SHMT2-233ENST00000557529 IGLC6P0CF74 106 aa9.31□□□□□ -0.92
SHMT2-233ENST00000557529 RNASE4P34096 147 aaKnown RBP9.31□□□□□ -0.92
SHMT2-233ENST00000557529 PRR9Q5T870 116 aa9.31□□□□□ -0.92
SHMT2-233ENST00000557529 LYZL1Q6UWQ5 148 aa9.31□□□□□ -0.92
SHMT2-233ENST00000557529 KIRREL3-AS3Q8N7Y1 241 aaPredicted RBP9.31□□□□□ -0.92
SHMT2-233ENST00000557529 OR2K2Q8NGT1 345 aa9.31□□□□□ -0.92
SHMT2-233ENST00000557529 TPPP3Q9BW30 176 aa9.31□□□□□ -0.92
SHMT2-233ENST00000557529 F8P00451 2351 aa9.3□□□□□ -0.92
SHMT2-233ENST00000557529 IGKV3D-20A0A0C4DH25 116 aa9.3□□□□□ -0.92
SHMT2-233ENST00000557529 F2Z2F3 143 aa9.3□□□□□ -0.92
SHMT2-233ENST00000557529 ARMS2P0C7Q2 107 aa9.3□□□□□ -0.92
SHMT2-233ENST00000557529 CD33P20138 364 aa9.3□□□□□ -0.92
SHMT2-233ENST00000557529 HOXA5P20719 270 aa9.3□□□□□ -0.92
SHMT2-233ENST00000557529 CMC4P56277 68 aaPredicted RBP9.3□□□□□ -0.92
SHMT2-233ENST00000557529 DEFB131AP59861 70 aa9.3□□□□□ -0.92
SHMT2-233ENST00000557529 COA6Q5JTJ3 125 aaKnown RBP9.3□□□□□ -0.92
SHMT2-233ENST00000557529 GDF5OSQ5U4N7 250 aa9.3□□□□□ -0.92
SHMT2-233ENST00000557529 C11orf21Q9P2W6 132 aa9.3□□□□□ -0.92
SHMT2-233ENST00000557529 SETXQ7Z333 2677 aaKnown RBP9.29□□□□□ -0.92
SHMT2-233ENST00000557529 SETD2Q9BYW2 2564 aaPredicted RBP9.29□□□□□ -0.92
SHMT2-233ENST00000557529 GRIFINA4D1Z8 144 aa9.29□□□□□ -0.92
SHMT2-233ENST00000557529 J3KRW8 73 aa9.29□□□□□ -0.92
SHMT2-233ENST00000557529 SAP30O75446 220 aa9.29□□□□□ -0.92
SHMT2-233ENST00000557529 PF4P02776 101 aa9.29□□□□□ -0.92
SHMT2-233ENST00000557529 GATD1Q8NB37 220 aa9.29□□□□□ -0.92
SHMT2-233ENST00000557529 MAP6D1Q9H9H5 199 aa9.29□□□□□ -0.92
SHMT2-233ENST00000557529 ZNF256Q9Y2P7 627 aaPredicted RBP9.29□□□□□ -0.92
SHMT2-233ENST00000557529 C2CD3Q4AC94 2353 aa9.29□□□□□ -0.92
SHMT2-233ENST00000557529 BAHCC1Q9P281 2608 aa9.29□□□□□ -0.92
SHMT2-233ENST00000557529 A8MTW9 85 aa9.28□□□□□ -0.92
SHMT2-233ENST00000557529 HLA-DRB4P13762 266 aa9.28□□□□□ -0.92
SHMT2-233ENST00000557529 CDKN1BP46527 198 aa9.28□□□□□ -0.92
SHMT2-233ENST00000557529 SLAQ13239 276 aa9.28□□□□□ -0.92
SHMT2-233ENST00000557529 ZNF575Q86XF7 245 aa9.28□□□□□ -0.92
SHMT2-233ENST00000557529 CNFNQ9BYD5 112 aa9.28□□□□□ -0.92
SHMT2-233ENST00000557529 HLA-DRB4X5D2U9 266 aa9.28□□□□□ -0.92
SHMT2-233ENST00000557529 C7orf71A4D174 169 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 66.2 ms