RNA–Protein interactions for RNA: ENST00000557348.5

SHMT2-229, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,659 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-229ENST00000557348 OR10AG1Q8NH19 301 aa9.77□□□□□ -0.85
SHMT2-229ENST00000557348 FOXC2Q99958 501 aa9.77□□□□□ -0.85
SHMT2-229ENST00000557348 MLST8Q9BVC4 326 aa9.77□□□□□ -0.85
SHMT2-229ENST00000557348 IGHV1-24A0A0C4DH33 117 aa9.76□□□□□ -0.85
SHMT2-229ENST00000557348 C9orf118A6NHY6 69 aa9.76□□□□□ -0.85
SHMT2-229ENST00000557348 G3V4G9 280 aa9.76□□□□□ -0.85
SHMT2-229ENST00000557348 HAX1O00165 279 aa9.76□□□□□ -0.85
SHMT2-229ENST00000557348 SLC35B1P78383 322 aa9.76□□□□□ -0.85
SHMT2-229ENST00000557348 LINC01559Q495D7 138 aa9.76□□□□□ -0.85
SHMT2-229ENST00000557348 Q86TA4 180 aa9.76□□□□□ -0.85
SHMT2-229ENST00000557348 OR4X2Q8NGF9 303 aa9.76□□□□□ -0.85
SHMT2-229ENST00000557348 RPH3ALQ9UNE2 315 aa9.76□□□□□ -0.85
SHMT2-229ENST00000557348 CRYBG3Q68DQ2 2970 aa9.76□□□□□ -0.85
SHMT2-229ENST00000557348 ANKRD17O75179 2603 aaKnown RBP9.76□□□□□ -0.85
SHMT2-229ENST00000557348 SPINK4O60575 86 aa9.75□□□□□ -0.85
SHMT2-229ENST00000557348 SCGB2A2Q13296 93 aa9.75□□□□□ -0.85
SHMT2-229ENST00000557348 TMEM97Q5BJF2 176 aa9.75□□□□□ -0.85
SHMT2-229ENST00000557348 ATOH7Q8N100 152 aa9.75□□□□□ -0.85
SHMT2-229ENST00000557348 BCL6BQ8N143 479 aaPredicted RBP9.75□□□□□ -0.85
SHMT2-229ENST00000557348 EXOC3-AS1Q8N2X6 119 aa9.75□□□□□ -0.85
SHMT2-229ENST00000557348 LINC00479Q96M42 142 aa9.75□□□□□ -0.85
SHMT2-229ENST00000557348 U3KQE9 123 aa9.75□□□□□ -0.85
SHMT2-229ENST00000557348 PRRC2AP48634 2157 aaKnown RBP9.75□□□□□ -0.85
SHMT2-229ENST00000557348 LOC102724200A0A096LPH7 203 aaPredicted RBP9.74□□□□□ -0.85
SHMT2-229ENST00000557348 MUC21A0A0G2JKD1 596 aa9.74□□□□□ -0.85
SHMT2-229ENST00000557348 MUC21A0A140T8X8 626 aa9.74□□□□□ -0.85
SHMT2-229ENST00000557348 C7orf71A4D174 169 aa9.74□□□□□ -0.85
SHMT2-229ENST00000557348 NPIPB6E9PJ23 425 aa9.74□□□□□ -0.85
SHMT2-229ENST00000557348 H3BTX0 84 aa9.74□□□□□ -0.85
SHMT2-229ENST00000557348 CT45A10P0DMU9 189 aa9.74□□□□□ -0.85
SHMT2-229ENST00000557348 MAJINQ3KP22 176 aa9.74□□□□□ -0.85
SHMT2-229ENST00000557348 MUC21Q5SSG8 566 aa9.74□□□□□ -0.85
SHMT2-229ENST00000557348 GOLT1AQ6ZVE7 132 aa9.74□□□□□ -0.85
SHMT2-229ENST00000557348 FER1L6-AS1Q8NA97 138 aa9.74□□□□□ -0.85
SHMT2-229ENST00000557348 MRPL53Q96EL3 112 aaKnown RBP9.74□□□□□ -0.85
SHMT2-229ENST00000557348 DAZAP1Q96EP5 407 aaKnown RBP9.74□□□□□ -0.85
SHMT2-229ENST00000557348 LINC00527Q9UJ94 153 aa9.74□□□□□ -0.85
SHMT2-229ENST00000557348 CLPSL1A2RUU4 121 aa9.74□□□□□ -0.85
SHMT2-229ENST00000557348 C19orf71A6NCJ1 209 aa9.74□□□□□ -0.85
SHMT2-229ENST00000557348 ZNF785A8K8V0 405 aa9.74□□□□□ -0.85
SHMT2-229ENST00000557348 ELANEP08246 267 aa9.74□□□□□ -0.85
SHMT2-229ENST00000557348 BMI1P35226 326 aa9.74□□□□□ -0.85
SHMT2-229ENST00000557348 HSD52Q0P140 79 aa9.74□□□□□ -0.85
SHMT2-229ENST00000557348 GDF5OSQ5U4N7 250 aa9.74□□□□□ -0.85
SHMT2-229ENST00000557348 NEGR1Q7Z3B1 354 aa9.74□□□□□ -0.85
SHMT2-229ENST00000557348 URB1-AS1Q96HZ7 61 aa9.74□□□□□ -0.85
SHMT2-229ENST00000557348 CELSR2Q9HCU4 2923 aa9.74□□□□□ -0.85
SHMT2-229ENST00000557348 NOTCH2Q04721 2471 aa9.73□□□□□ -0.85
SHMT2-229ENST00000557348 K7EP34 96 aa9.73□□□□□ -0.85
SHMT2-229ENST00000557348 M0QZ24 198 aa9.73□□□□□ -0.85
SHMT2-229ENST00000557348 P01737 135 aa9.73□□□□□ -0.85
SHMT2-229ENST00000557348 PSMB8P28062 276 aa9.73□□□□□ -0.85
SHMT2-229ENST00000557348 FOXE3Q13461 319 aa9.73□□□□□ -0.85
SHMT2-229ENST00000557348 SAMD13Q5VXD3 122 aa9.73□□□□□ -0.85
SHMT2-229ENST00000557348 SVIPQ8NHG7 77 aa9.73□□□□□ -0.85
SHMT2-229ENST00000557348 ABCA1O95477 2261 aa9.73□□□□□ -0.85
SHMT2-229ENST00000557348 ITPR2Q14571 2701 aa9.72□□□□□ -0.85
SHMT2-229ENST00000557348 RBAKDNA6NC62 111 aa9.72□□□□□ -0.85
SHMT2-229ENST00000557348 CHEK1O14757 476 aa9.72□□□□□ -0.85
SHMT2-229ENST00000557348 LGALS9BQ3B8N2 356 aa9.72□□□□□ -0.85
SHMT2-229ENST00000557348 LGALS9CQ6DKI2 356 aa9.72□□□□□ -0.85
SHMT2-229ENST00000557348 C17orf77Q96MU5 243 aa9.72□□□□□ -0.85
SHMT2-229ENST00000557348 PSG8Q9UQ74 426 aa9.72□□□□□ -0.85
SHMT2-229ENST00000557348 TEX15Q9BXT5 2789 aa9.72□□□□□ -0.85
SHMT2-229ENST00000557348 TMEM189A5PLL7 270 aa9.71□□□□□ -0.85
SHMT2-229ENST00000557348 J3QR89 54 aa9.71□□□□□ -0.85
SHMT2-229ENST00000557348 IGLV2-11P01706 119 aa9.71□□□□□ -0.85
SHMT2-229ENST00000557348 RIGQ13278 110 aa9.71□□□□□ -0.85
SHMT2-229ENST00000557348 FAM106AQ4KMX7 169 aa9.71□□□□□ -0.85
SHMT2-229ENST00000557348 C16orf54Q6UWD8 224 aa9.71□□□□□ -0.85
SHMT2-229ENST00000557348 PRNTQ86SH4 94 aa9.71□□□□□ -0.85
SHMT2-229ENST00000557348 Q8N2B8 174 aa9.71□□□□□ -0.85
SHMT2-229ENST00000557348 CIARTQ8N365 385 aaPredicted RBP9.71□□□□□ -0.85
SHMT2-229ENST00000557348 WFDC11Q8NEX6 87 aa9.71□□□□□ -0.85
SHMT2-229ENST00000557348 AP5S1Q9NUS5 200 aa9.71□□□□□ -0.85
SHMT2-229ENST00000557348 CREBBPQ92793 2442 aa9.71□□□□□ -0.86
SHMT2-229ENST00000557348 IGHV3-35A0A0C4DH35 117 aa9.71□□□□□ -0.86
SHMT2-229ENST00000557348 K7EMT4 169 aa9.71□□□□□ -0.86
SHMT2-229ENST00000557348 HOXA3O43365 443 aaPredicted RBP9.71□□□□□ -0.86
SHMT2-229ENST00000557348 COX8CQ7Z4L0 72 aa9.71□□□□□ -0.86
SHMT2-229ENST00000557348 SMAD5-AS1Q9Y6J3 95 aa9.71□□□□□ -0.86
SHMT2-229ENST00000557348 TRAV8-6A0A0B4J262 113 aa9.7□□□□□ -0.86
SHMT2-229ENST00000557348 ZNF207O43670 478 aaKnown RBP9.7□□□□□ -0.86
SHMT2-229ENST00000557348 CAMPP49913 170 aa9.7□□□□□ -0.86
SHMT2-229ENST00000557348 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa9.7□□□□□ -0.86
SHMT2-229ENST00000557348 Q6ZVH6 145 aa9.7□□□□□ -0.86
SHMT2-229ENST00000557348 BOD1L2Q8IYS8 172 aa9.7□□□□□ -0.86
SHMT2-229ENST00000557348 RNF152Q8N8N0 203 aa9.7□□□□□ -0.86
SHMT2-229ENST00000557348 OR2K2Q8NGT1 345 aa9.7□□□□□ -0.86
SHMT2-229ENST00000557348 ZNF747Q9BV97 191 aa9.7□□□□□ -0.86
SHMT2-229ENST00000557348 KLK15Q9H2R5 256 aa9.7□□□□□ -0.86
SHMT2-229ENST00000557348 DAZ1Q9NQZ3 744 aaKnown RBP9.7□□□□□ -0.86
SHMT2-229ENST00000557348 CR1P17927 2039 aa9.7□□□□□ -0.86
SHMT2-229ENST00000557348 Q6ZS46 218 aa9.69□□□□□ -0.86
SHMT2-229ENST00000557348 C2orf91Q6ZV80 131 aa9.69□□□□□ -0.86
SHMT2-229ENST00000557348 FA2HQ7L5A8 372 aa9.69□□□□□ -0.86
SHMT2-229ENST00000557348 GPHB5Q86YW7 130 aa9.69□□□□□ -0.86
SHMT2-229ENST00000557348 GLMPQ8WWB7 406 aa9.69□□□□□ -0.86
SHMT2-229ENST00000557348 ZNF702PQ9H963 129 aa9.69□□□□□ -0.86
SHMT2-229ENST00000557348 HIGD1BQ9P298 99 aa9.69□□□□□ -0.86
Retrieved 100 of 20,778 RNA–protein pairs in 129.5 ms