RNA–Protein interactions for RNA: ENST00000556725.1

SYNE2-222, Transcript of spectrin repeat containing nuclear envelope protein 2, human

TSL 3

Gene SYNE2, Length 672 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE2-222	ENST00000556725	FNDC10	F2Z333	226 aa		5.69	□□□□□ -1.5
SYNE2-222	ENST00000556725	NDUFB4	O95168	129 aa		5.69	□□□□□ -1.5
SYNE2-222	ENST00000556725	ORM1	P02763	201 aa		5.69	□□□□□ -1.5
SYNE2-222	ENST00000556725	CRISP2	P16562	243 aa		5.69	□□□□□ -1.5
SYNE2-222	ENST00000556725	LINC01556	Q5JQF7	62 aa		5.69	□□□□□ -1.5
SYNE2-222	ENST00000556725	ZNF546	Q86UE3	836 aa		5.69	□□□□□ -1.5
SYNE2-222	ENST00000556725	OR10P1	Q8NGE3	313 aa		5.69	□□□□□ -1.5
SYNE2-222	ENST00000556725	OR10G4	Q8NGN3	311 aa		5.69	□□□□□ -1.5
SYNE2-222	ENST00000556725	TXNDC17	Q9BRA2	123 aa		5.69	□□□□□ -1.5
SYNE2-222	ENST00000556725	DNAJC4	Q9NNZ3	241 aa		5.69	□□□□□ -1.5
SYNE2-222	ENST00000556725	TRBV19	A0A075B6N1	114 aa		5.68	□□□□□ -1.5
SYNE2-222	ENST00000556725	IGKV2-40	A0A087WW87	121 aa	Predicted RBP	5.68	□□□□□ -1.5
SYNE2-222	ENST00000556725	IGKV2D-40	P01614	121 aa	Predicted RBP	5.68	□□□□□ -1.5
SYNE2-222	ENST00000556725	HNRNPA3	P51991	378 aa	Known RBP	5.68	□□□□□ -1.5
SYNE2-222	ENST00000556725	SPCS2	Q15005	226 aa		5.68	□□□□□ -1.5
SYNE2-222	ENST00000556725	GUK1	Q16774	197 aa		5.68	□□□□□ -1.5
SYNE2-222	ENST00000556725	MUC21	Q5SSG8	566 aa		5.68	□□□□□ -1.5
SYNE2-222	ENST00000556725	MIC13	Q5XKP0	118 aa		5.68	□□□□□ -1.5
SYNE2-222	ENST00000556725	EXOC3-AS1	Q8N2X6	119 aa		5.68	□□□□□ -1.5
SYNE2-222	ENST00000556725	MRPL53	Q96EL3	112 aa	Known RBP	5.68	□□□□□ -1.5
SYNE2-222	ENST00000556725	ARPC5L	Q9BPX5	153 aa		5.68	□□□□□ -1.5
SYNE2-222	ENST00000556725	SOST	Q9BQB4	213 aa		5.68	□□□□□ -1.5
SYNE2-222	ENST00000556725	SLC25A31	Q9H0C2	315 aa		5.68	□□□□□ -1.5
SYNE2-222	ENST00000556725	MGAT4C	Q9UBM8	478 aa		5.68	□□□□□ -1.5
SYNE2-222	ENST00000556725	TNXB	P22105	4242 aa		5.68	□□□□□ -1.5
SYNE2-222	ENST00000556725	IGHV3-16	A0A0C4DH30	117 aa		5.67	□□□□□ -1.5
SYNE2-222	ENST00000556725		C9JCJ5	164 aa		5.67	□□□□□ -1.5
SYNE2-222	ENST00000556725	ZNF253	O75346	499 aa		5.67	□□□□□ -1.5
SYNE2-222	ENST00000556725	LRP2	P98164	4655 aa		5.67	□□□□□ -1.5
SYNE2-222	ENST00000556725	C9orf47	Q6ZRZ4	202 aa		5.67	□□□□□ -1.5
SYNE2-222	ENST00000556725	NHLRC2	Q8NBF2	726 aa		5.67	□□□□□ -1.5
SYNE2-222	ENST00000556725	CIRBP-AS1	Q8TBR5	109 aa		5.67	□□□□□ -1.5
SYNE2-222	ENST00000556725	RASL10A	Q92737	203 aa		5.67	□□□□□ -1.5
SYNE2-222	ENST00000556725	CHAC1	Q9BUX1	264 aa		5.67	□□□□□ -1.5
SYNE2-222	ENST00000556725	IGLV2-8	P01709	118 aa		5.66	□□□□□ -1.5
SYNE2-222	ENST00000556725	NMB	P08949	121 aa		5.66	□□□□□ -1.5
SYNE2-222	ENST00000556725	MT1HL1	P0DM35	61 aa		5.66	□□□□□ -1.5
SYNE2-222	ENST00000556725	PYY	P10082	97 aa		5.66	□□□□□ -1.5
SYNE2-222	ENST00000556725	PPT1	P50897	306 aa		5.66	□□□□□ -1.5
SYNE2-222	ENST00000556725	TIRAP	P58753	221 aa		5.66	□□□□□ -1.5
SYNE2-222	ENST00000556725	OR10J3	Q5JRS4	329 aa		5.66	□□□□□ -1.5
SYNE2-222	ENST00000556725	FAM122C	Q6P4D5	195 aa		5.66	□□□□□ -1.5
SYNE2-222	ENST00000556725	NRARP	Q7Z6K4	114 aa		5.66	□□□□□ -1.5
SYNE2-222	ENST00000556725		Q8TAT8	98 aa		5.66	□□□□□ -1.5
SYNE2-222	ENST00000556725	BAALC	Q8WXS3	180 aa		5.66	□□□□□ -1.5
SYNE2-222	ENST00000556725	DAZAP1	Q96EP5	407 aa	Known RBP	5.66	□□□□□ -1.5
SYNE2-222	ENST00000556725	SRR	Q9GZT4	340 aa		5.66	□□□□□ -1.5
SYNE2-222	ENST00000556725	ZNF492	Q9P255	531 aa		5.66	□□□□□ -1.5
SYNE2-222	ENST00000556725	RSL24D1	Q9UHA3	163 aa	Known RBP	5.66	□□□□□ -1.5
SYNE2-222	ENST00000556725	PRELID1	Q9Y255	219 aa		5.66	□□□□□ -1.5
SYNE2-222	ENST00000556725	TRAV8-6	A0A0B4J262	113 aa		5.65	□□□□□ -1.5
SYNE2-222	ENST00000556725	TRAV4	A0A0B4J268	109 aa		5.65	□□□□□ -1.5
SYNE2-222	ENST00000556725	C9orf170	A2RU37	121 aa		5.65	□□□□□ -1.5
SYNE2-222	ENST00000556725	SCGB1D2	O95969	90 aa		5.65	□□□□□ -1.5
SYNE2-222	ENST00000556725	HIST1H1E	P10412	219 aa	Known RBP	5.65	□□□□□ -1.5
SYNE2-222	ENST00000556725	GATA1	P15976	413 aa	Predicted RBP	5.65	□□□□□ -1.5
SYNE2-222	ENST00000556725	TNFSF8	P32971	234 aa		5.65	□□□□□ -1.5
SYNE2-222	ENST00000556725	CAMLG	P49069	296 aa		5.65	□□□□□ -1.5
SYNE2-222	ENST00000556725	ZNF846	Q147U1	533 aa		5.65	□□□□□ -1.5
SYNE2-222	ENST00000556725	TMEM183B	Q1AE95	376 aa		5.65	□□□□□ -1.5
SYNE2-222	ENST00000556725	TMEM78	Q5T7P6	136 aa		5.65	□□□□□ -1.5
SYNE2-222	ENST00000556725		Q6ZRG5	221 aa		5.65	□□□□□ -1.5
SYNE2-222	ENST00000556725	TMEM183A	Q8IXX5	376 aa		5.65	□□□□□ -1.5
SYNE2-222	ENST00000556725	OR4C5	Q8NGB2	326 aa		5.65	□□□□□ -1.5
SYNE2-222	ENST00000556725	MCFD2	Q8NI22	146 aa		5.65	□□□□□ -1.5
SYNE2-222	ENST00000556725	TM2D2	Q9BX73	214 aa		5.65	□□□□□ -1.5
SYNE2-222	ENST00000556725	RABL2A	Q9UBK7	228 aa	Predicted RBP	5.65	□□□□□ -1.5
SYNE2-222	ENST00000556725	TIMM9	Q9Y5J7	89 aa		5.65	□□□□□ -1.5
SYNE2-222	ENST00000556725	C7orf66	A4D0T2	115 aa		5.64	□□□□□ -1.51
SYNE2-222	ENST00000556725	FABP12	A6NFH5	140 aa		5.64	□□□□□ -1.51
SYNE2-222	ENST00000556725	RBFOX3	A6NFN3	312 aa		5.64	□□□□□ -1.51
SYNE2-222	ENST00000556725	GNRH2	O43555	120 aa		5.64	□□□□□ -1.51
SYNE2-222	ENST00000556725	TSC22D2	O75157	780 aa		5.64	□□□□□ -1.51
SYNE2-222	ENST00000556725	ZNF138	P52744	262 aa		5.64	□□□□□ -1.51
SYNE2-222	ENST00000556725	UBE2M	P61081	183 aa	Known RBP	5.64	□□□□□ -1.51
SYNE2-222	ENST00000556725	SH2D6	Q7Z4S9	175 aa		5.64	□□□□□ -1.51
SYNE2-222	ENST00000556725	OR1L4	Q8NGR5	311 aa		5.64	□□□□□ -1.51
SYNE2-222	ENST00000556725	TRIM63	Q969Q1	353 aa		5.64	□□□□□ -1.51
SYNE2-222	ENST00000556725	SLC25A21	Q9BQT8	299 aa	Predicted RBP	5.64	□□□□□ -1.51
SYNE2-222	ENST00000556725	SPX	Q9BT56	116 aa		5.64	□□□□□ -1.51
SYNE2-222	ENST00000556725	GGACT	Q9BVM4	153 aa		5.64	□□□□□ -1.51
SYNE2-222	ENST00000556725	RS1	O15537	224 aa		5.63	□□□□□ -1.51
SYNE2-222	ENST00000556725	SMIM18	P0DKX4	95 aa		5.63	□□□□□ -1.51
SYNE2-222	ENST00000556725	FAU	P35544	74 aa	Known RBP	5.63	□□□□□ -1.51
SYNE2-222	ENST00000556725	TAS2R30	P59541	319 aa		5.63	□□□□□ -1.51
SYNE2-222	ENST00000556725	RPL37A	P61513	92 aa	Known RBP	5.63	□□□□□ -1.51
SYNE2-222	ENST00000556725	LAGE3	Q14657	143 aa		5.63	□□□□□ -1.51
SYNE2-222	ENST00000556725	LELP1	Q5T871	98 aa		5.63	□□□□□ -1.51
SYNE2-222	ENST00000556725	DAZ4	Q86SG3	579 aa	Known RBP	5.63	□□□□□ -1.51
SYNE2-222	ENST00000556725	TOMM5	Q8N4H5	51 aa		5.63	□□□□□ -1.51
SYNE2-222	ENST00000556725	SLC25A29	Q8N8R3	303 aa		5.63	□□□□□ -1.51
SYNE2-222	ENST00000556725	DYNC2LI1	Q8TCX1	351 aa		5.63	□□□□□ -1.51
SYNE2-222	ENST00000556725	DNAJC30	Q96LL9	226 aa		5.63	□□□□□ -1.51
SYNE2-222	ENST00000556725	DAZ3	Q9NR90	486 aa	Known RBP	5.63	□□□□□ -1.51
SYNE2-222	ENST00000556725	SLC39A9	Q9NUM3	307 aa		5.63	□□□□□ -1.51
SYNE2-222	ENST00000556725	GSKIP	Q9P0R6	139 aa		5.63	□□□□□ -1.51
SYNE2-222	ENST00000556725	TMEM14C	Q9P0S9	112 aa		5.63	□□□□□ -1.51
SYNE2-222	ENST00000556725	FLVCR2	Q9UPI3	526 aa		5.63	□□□□□ -1.51
SYNE2-222	ENST00000556725	RNF222	A6NCQ9	220 aa		5.62	□□□□□ -1.51
SYNE2-222	ENST00000556725		M0R2P5	195 aa		5.62	□□□□□ -1.51

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