RNA–Protein interactions for RNA: ENST00000555995.1

CCDC88C-210, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 3

Gene CCDC88C, Length 689 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-210ENST00000555995 POM121L12Q8N7R1 296 aa14.58□□□□□ -0.08
CCDC88C-210ENST00000555995 HMSDA8MTL9 139 aa14.57□□□□□ -0.08
CCDC88C-210ENST00000555995 NDFIP1Q9BT67 221 aa14.57□□□□□ -0.08
CCDC88C-210ENST00000555995 DNAH6Q9C0G6 4158 aa14.56□□□□□ -0.08
CCDC88C-210ENST00000555995 KMT2AQ03164 3969 aa14.56□□□□□ -0.08
CCDC88C-210ENST00000555995 A0A0D9SG52 128 aa14.56□□□□□ -0.08
CCDC88C-210ENST00000555995 FBLL1A6NHQ2 334 aaKnown RBP14.56□□□□□ -0.08
CCDC88C-210ENST00000555995 RNF212Q495C1 297 aa14.56□□□□□ -0.08
CCDC88C-210ENST00000555995 PRR9Q5T870 116 aa14.56□□□□□ -0.08
CCDC88C-210ENST00000555995 Q6AWC8 147 aa14.56□□□□□ -0.08
CCDC88C-210ENST00000555995 KCNRGQ8N5I3 272 aa14.56□□□□□ -0.08
CCDC88C-210ENST00000555995 TCL1AP56279 114 aa14.55□□□□□ -0.08
CCDC88C-210ENST00000555995 ZNF415Q09FC8 603 aa14.55□□□□□ -0.08
CCDC88C-210ENST00000555995 IQCF2Q8IXL9 164 aa14.55□□□□□ -0.08
CCDC88C-210ENST00000555995 C11orf72Q8NBR9 251 aa14.55□□□□□ -0.08
CCDC88C-210ENST00000555995 A0A1W2PRE2 83 aa14.54□□□□□ -0.08
CCDC88C-210ENST00000555995 GAGE12BA1L429 117 aa14.54□□□□□ -0.08
CCDC88C-210ENST00000555995 GAGE7O76087 117 aa14.54□□□□□ -0.08
CCDC88C-210ENST00000555995 GAGE12FP0CL80 117 aa14.54□□□□□ -0.08
CCDC88C-210ENST00000555995 GAGE12GP0CL81 117 aa14.54□□□□□ -0.08
CCDC88C-210ENST00000555995 GAGE12IP0CL82 117 aa14.54□□□□□ -0.08
CCDC88C-210ENST00000555995 EIF5AP63241 154 aaKnown RBP14.54□□□□□ -0.08
CCDC88C-210ENST00000555995 C18orf15Q96N68 181 aa14.54□□□□□ -0.08
CCDC88C-210ENST00000555995 NKX6-2Q9C056 277 aaPredicted RBP14.54□□□□□ -0.08
CCDC88C-210ENST00000555995 GSN-AS1Q9NRJ2 163 aa14.54□□□□□ -0.08
CCDC88C-210ENST00000555995 TRGV11A0A075B6L2 103 aa14.53□□□□□ -0.08
CCDC88C-210ENST00000555995 KANTRA0A1W2PQU2 76 aa14.53□□□□□ -0.08
CCDC88C-210ENST00000555995 TCRAP04437 139 aa14.53□□□□□ -0.08
CCDC88C-210ENST00000555995 FAM3BP58499 235 aaPredicted RBP14.53□□□□□ -0.08
CCDC88C-210ENST00000555995 FAM159AQ6UWV7 190 aa14.53□□□□□ -0.08
CCDC88C-210ENST00000555995 TREM1Q9NP99 234 aa14.53□□□□□ -0.08
CCDC88C-210ENST00000555995 CYTL1Q9NRR1 136 aa14.53□□□□□ -0.08
CCDC88C-210ENST00000555995 VPS13DQ5THJ4 4388 aa14.52□□□□□ -0.08
CCDC88C-210ENST00000555995 TRGV2A0A075B6R0 118 aa14.52□□□□□ -0.09
CCDC88C-210ENST00000555995 TRAV21A0A0B4J279 112 aa14.52□□□□□ -0.09
CCDC88C-210ENST00000555995 SMLR1H3BR10 107 aa14.52□□□□□ -0.09
CCDC88C-210ENST00000555995 LGALS9BQ3B8N2 356 aa14.52□□□□□ -0.09
CCDC88C-210ENST00000555995 TRGV1A0A0A0MS02 117 aa14.51□□□□□ -0.09
CCDC88C-210ENST00000555995 SUMO1P63165 101 aaKnown RBP14.51□□□□□ -0.09
CCDC88C-210ENST00000555995 GNG5P63218 68 aa14.51□□□□□ -0.09
CCDC88C-210ENST00000555995 ZFP69Q49AA0 526 aa14.51□□□□□ -0.09
CCDC88C-210ENST00000555995 Q6ZTI0 123 aa14.51□□□□□ -0.09
CCDC88C-210ENST00000555995 CYB561D1Q8N8Q1 229 aa14.51□□□□□ -0.09
CCDC88C-210ENST00000555995 STOML3Q8TAV4 291 aa14.51□□□□□ -0.09
CCDC88C-210ENST00000555995 ATG101Q9BSB4 218 aa14.51□□□□□ -0.09
CCDC88C-210ENST00000555995 KLF12Q9Y4X4 402 aa14.51□□□□□ -0.09
CCDC88C-210ENST00000555995 GGTLC3B5MD39 225 aa14.5□□□□□ -0.09
CCDC88C-210ENST00000555995 UMAD1C9J7I0 102 aa14.5□□□□□ -0.09
CCDC88C-210ENST00000555995 H3BNG1 76 aa14.5□□□□□ -0.09
CCDC88C-210ENST00000555995 BCL2L11O43521 198 aa14.5□□□□□ -0.09
CCDC88C-210ENST00000555995 SPINK4O60575 86 aa14.5□□□□□ -0.09
CCDC88C-210ENST00000555995 SEC11BP0C7V7 166 aa14.5□□□□□ -0.09
CCDC88C-210ENST00000555995 ZNF726P1Q15940 193 aa14.5□□□□□ -0.09
CCDC88C-210ENST00000555995 SSX7Q7RTT5 188 aa14.5□□□□□ -0.09
CCDC88C-210ENST00000555995 TMEM75Q8N9X5 138 aa14.5□□□□□ -0.09
CCDC88C-210ENST00000555995 EPDR1Q9UM22 224 aa14.5□□□□□ -0.09
CCDC88C-210ENST00000555995 MAP1LC3B2A6NCE7 125 aa14.49□□□□□ -0.09
CCDC88C-210ENST00000555995 NUDT3O95989 172 aa14.49□□□□□ -0.09
CCDC88C-210ENST00000555995 PPT1P50897 306 aa14.49□□□□□ -0.09
CCDC88C-210ENST00000555995 OR5I1Q13606 314 aa14.49□□□□□ -0.09
CCDC88C-210ENST00000555995 TDRG1Q3Y452 100 aa14.49□□□□□ -0.09
CCDC88C-210ENST00000555995 MUC21Q5SSG8 566 aa14.49□□□□□ -0.09
CCDC88C-210ENST00000555995 KCNS1Q96KK3 526 aa14.49□□□□□ -0.09
CCDC88C-210ENST00000555995 SPXQ9BT56 116 aa14.49□□□□□ -0.09
CCDC88C-210ENST00000555995 ZNF471Q9BX82 626 aaPredicted RBP14.49□□□□□ -0.09
CCDC88C-210ENST00000555995 MAP1LC3BQ9GZQ8 125 aa14.49□□□□□ -0.09
CCDC88C-210ENST00000555995 TRAV8-1A0A0A6YYK1 113 aa14.48□□□□□ -0.09
CCDC88C-210ENST00000555995 PFDN1O60925 122 aa14.48□□□□□ -0.09
CCDC88C-210ENST00000555995 TCEAL7Q9BRU2 100 aa14.48□□□□□ -0.09
CCDC88C-210ENST00000555995 TMPRSS5Q9H3S3 457 aa14.48□□□□□ -0.09
CCDC88C-210ENST00000555995 TP53TG3Q9ULZ0 132 aa14.48□□□□□ -0.09
CCDC88C-210ENST00000555995 IFNA7P01567 189 aa14.47□□□□□ -0.09
CCDC88C-210ENST00000555995 CCL18P55774 89 aa14.47□□□□□ -0.09
CCDC88C-210ENST00000555995 FLI1Q01543 452 aaPredicted RBP14.47□□□□□ -0.09
CCDC88C-210ENST00000555995 SAPCD1Q5SSQ6 148 aa14.47□□□□□ -0.09
CCDC88C-210ENST00000555995 OR11H4Q8NGC9 324 aa14.47□□□□□ -0.09
CCDC88C-210ENST00000555995 PSG8Q9UQ74 426 aa14.47□□□□□ -0.09
CCDC88C-210ENST00000555995 ARL2-SNX15V9GYD0 113 aa14.47□□□□□ -0.09
CCDC88C-210ENST00000555995 TRAV26-1A0A087WT03 109 aa14.46□□□□□ -0.09
CCDC88C-210ENST00000555995 F6UZH7 168 aa14.46□□□□□ -0.09
CCDC88C-210ENST00000555995 TMEM183BQ1AE95 376 aa14.46□□□□□ -0.09
CCDC88C-210ENST00000555995 DPPA3Q6W0C5 159 aa14.46□□□□□ -0.09
CCDC88C-210ENST00000555995 TMEM183AQ8IXX5 376 aa14.46□□□□□ -0.09
CCDC88C-210ENST00000555995 HIST1H2BAQ96A08 127 aa14.46□□□□□ -0.09
CCDC88C-210ENST00000555995 SDF2L1Q9HCN8 221 aa14.46□□□□□ -0.09
CCDC88C-210ENST00000555995 NAGKQ9UJ70 344 aa14.46□□□□□ -0.09
CCDC88C-210ENST00000555995 TPT1P13693 172 aaKnown RBP14.45□□□□□ -0.1
CCDC88C-210ENST00000555995 FGF8P55075 233 aaPredicted RBP14.45□□□□□ -0.1
CCDC88C-210ENST00000555995 SLAQ13239 276 aa14.45□□□□□ -0.1
CCDC88C-210ENST00000555995 SMUG1Q53HV7 270 aa14.45□□□□□ -0.1
CCDC88C-210ENST00000555995 Q6ZQT7 251 aa14.45□□□□□ -0.1
CCDC88C-210ENST00000555995 FAM74A7A6NL05 159 aa14.44□□□□□ -0.1
CCDC88C-210ENST00000555995 HOXA5P20719 270 aa14.44□□□□□ -0.1
CCDC88C-210ENST00000555995 UBE2G2P60604 165 aa14.44□□□□□ -0.1
CCDC88C-210ENST00000555995 TCTE3Q8IZS6 198 aa14.44□□□□□ -0.1
CCDC88C-210ENST00000555995 TVP23CQ96ET8 276 aa14.44□□□□□ -0.1
CCDC88C-210ENST00000555995 MRPL16Q9NX20 251 aaKnown RBP14.44□□□□□ -0.1
CCDC88C-210ENST00000555995 MUC4Q99102 2169 aa14.43□□□□□ -0.1
CCDC88C-210ENST00000555995 PEX7O00628 323 aa14.43□□□□□ -0.1
CCDC88C-210ENST00000555995 PFN1P07737 140 aaKnown RBP14.43□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms