RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 GSN-AS1Q9NRJ2 163 aa10.34□□□□□ -0.75
SHMT2-217ENST00000555116 XCL2Q9UBD3 114 aa10.34□□□□□ -0.75
SHMT2-217ENST00000555116 DUSP14O95147 198 aaKnown RBP10.33□□□□□ -0.76
SHMT2-217ENST00000555116 PRB4P10163 310 aaPredicted RBP10.33□□□□□ -0.76
SHMT2-217ENST00000555116 CNN1P51911 297 aaKnown RBP10.33□□□□□ -0.76
SHMT2-217ENST00000555116 FXYD7P58549 80 aa10.33□□□□□ -0.76
SHMT2-217ENST00000555116 LINC01551Q86U37 167 aa10.33□□□□□ -0.76
SHMT2-217ENST00000555116 OR8A1Q8NGG7 326 aa10.33□□□□□ -0.76
SHMT2-217ENST00000555116 C1QTNF4Q9BXJ3 329 aa10.33□□□□□ -0.76
SHMT2-217ENST00000555116 A0A0J9YWU9 116 aa10.32□□□□□ -0.76
SHMT2-217ENST00000555116 ZNF705FA8MVS1 300 aaPredicted RBP10.32□□□□□ -0.76
SHMT2-217ENST00000555116 RPS10P46783 165 aaKnown RBP10.32□□□□□ -0.76
SHMT2-217ENST00000555116 C11orf52Q96A22 123 aa10.32□□□□□ -0.76
SHMT2-217ENST00000555116 FXYD5Q96DB9 178 aa10.32□□□□□ -0.76
SHMT2-217ENST00000555116 PAXXQ9BUH6 204 aa10.32□□□□□ -0.76
SHMT2-217ENST00000555116 TRBV20OR9-2A0A075B6H5 130 aa10.32□□□□□ -0.76
SHMT2-217ENST00000555116 PDE6HQ13956 83 aa10.32□□□□□ -0.76
SHMT2-217ENST00000555116 TRBV24-1A0A075B6N3 115 aa10.31□□□□□ -0.76
SHMT2-217ENST00000555116 PRAC2D3DTV9 90 aa10.31□□□□□ -0.76
SHMT2-217ENST00000555116 C3orf84H3BNL1 204 aa10.31□□□□□ -0.76
SHMT2-217ENST00000555116 H7BYZ3 331 aa10.31□□□□□ -0.76
SHMT2-217ENST00000555116 OR10J4P0C629 311 aa10.31□□□□□ -0.76
SHMT2-217ENST00000555116 NBEAP1P0C6P0 100 aa10.31□□□□□ -0.76
SHMT2-217ENST00000555116 HIST1H1AQ02539 215 aaPredicted RBP10.31□□□□□ -0.76
SHMT2-217ENST00000555116 BLNKQ8WV28 456 aa10.31□□□□□ -0.76
SHMT2-217ENST00000555116 ANAPC16Q96DE5 110 aa10.31□□□□□ -0.76
SHMT2-217ENST00000555116 X6R8D5 127 aa10.31□□□□□ -0.76
SHMT2-217ENST00000555116 A0A1W2PRE2 83 aa10.3□□□□□ -0.76
SHMT2-217ENST00000555116 LINC00587B1AMM8 73 aa10.3□□□□□ -0.76
SHMT2-217ENST00000555116 PFN1P07737 140 aaKnown RBP10.3□□□□□ -0.76
SHMT2-217ENST00000555116 FAM210BQ96KR6 192 aa10.3□□□□□ -0.76
SHMT2-217ENST00000555116 PGPEP1LA6NFU8 196 aa10.3□□□□□ -0.76
SHMT2-217ENST00000555116 UBE2L3P68036 154 aaKnown RBP10.3□□□□□ -0.76
SHMT2-217ENST00000555116 Q8NAQ8 132 aa10.3□□□□□ -0.76
SHMT2-217ENST00000555116 MRPL53Q96EL3 112 aaKnown RBP10.3□□□□□ -0.76
SHMT2-217ENST00000555116 GGTLC3B5MD39 225 aa10.29□□□□□ -0.76
SHMT2-217ENST00000555116 M0R3E3 92 aa10.29□□□□□ -0.76
SHMT2-217ENST00000555116 HOXA5P20719 270 aa10.29□□□□□ -0.76
SHMT2-217ENST00000555116 S100A2P29034 98 aa10.29□□□□□ -0.76
SHMT2-217ENST00000555116 ZNF705AQ6ZN79 300 aaPredicted RBP10.29□□□□□ -0.76
SHMT2-217ENST00000555116 EXOC3-AS1Q8N2X6 119 aa10.29□□□□□ -0.76
SHMT2-217ENST00000555116 OCC1Q8TAD7 63 aa10.29□□□□□ -0.76
SHMT2-217ENST00000555116 C11orf68Q9H3H3 251 aaKnown RBP10.29□□□□□ -0.76
SHMT2-217ENST00000555116 C9JCJ5 164 aa10.28□□□□□ -0.76
SHMT2-217ENST00000555116 GATCO43716 136 aaKnown RBP10.28□□□□□ -0.76
SHMT2-217ENST00000555116 IL17DQ8TAD2 202 aa10.28□□□□□ -0.76
SHMT2-217ENST00000555116 PYGO2Q9BRQ0 406 aa10.28□□□□□ -0.76
SHMT2-217ENST00000555116 IGHV4-28A0A0C4DH34 117 aa10.27□□□□□ -0.76
SHMT2-217ENST00000555116 M0R2Z0 102 aa10.27□□□□□ -0.76
SHMT2-217ENST00000555116 DEFB4AO15263 64 aa10.27□□□□□ -0.76
SHMT2-217ENST00000555116 CRXO43186 299 aaPredicted RBP10.27□□□□□ -0.76
SHMT2-217ENST00000555116 AMBPP02760 352 aa10.27□□□□□ -0.76
SHMT2-217ENST00000555116 RBMY1A1P0DJD3 496 aaKnown RBP10.27□□□□□ -0.76
SHMT2-217ENST00000555116 RBMY1CP0DJD4 496 aa10.27□□□□□ -0.76
SHMT2-217ENST00000555116 MIFP14174 115 aa10.27□□□□□ -0.76
SHMT2-217ENST00000555116 SUMO1P63165 101 aaKnown RBP10.27□□□□□ -0.76
SHMT2-217ENST00000555116 RBMY1FQ15415 496 aaKnown RBP10.27□□□□□ -0.76
SHMT2-217ENST00000555116 SPINK13Q1W4C9 94 aa10.27□□□□□ -0.76
SHMT2-217ENST00000555116 CASC10Q5T4H9 136 aa10.27□□□□□ -0.76
SHMT2-217ENST00000555116 C1orf158Q8N1D5 194 aa10.27□□□□□ -0.76
SHMT2-217ENST00000555116 IGF2BP2-AS1Q96M15 143 aa10.27□□□□□ -0.76
SHMT2-217ENST00000555116 LY96Q9Y6Y9 160 aa10.27□□□□□ -0.76
SHMT2-217ENST00000555116 ZFAND6Q6FIF0 208 aa10.27□□□□□ -0.77
SHMT2-217ENST00000555116 OR10J6PQ8NGY7 276 aa10.27□□□□□ -0.77
SHMT2-217ENST00000555116 SFRP2Q96HF1 295 aa10.27□□□□□ -0.77
SHMT2-217ENST00000555116 AAMDCQ9H7C9 122 aa10.27□□□□□ -0.77
SHMT2-217ENST00000555116 NPIPB6E9PJ23 425 aa10.26□□□□□ -0.77
SHMT2-217ENST00000555116 PPP1R2P9O14990 202 aa10.26□□□□□ -0.77
SHMT2-217ENST00000555116 TRGC2P03986 189 aa10.26□□□□□ -0.77
SHMT2-217ENST00000555116 NEU1Q99519 415 aa10.26□□□□□ -0.77
SHMT2-217ENST00000555116 K7EN84 100 aa10.25□□□□□ -0.77
SHMT2-217ENST00000555116 CT45A10P0DMU9 189 aa10.25□□□□□ -0.77
SHMT2-217ENST00000555116 NDUFA6P56556 154 aa10.25□□□□□ -0.77
SHMT2-217ENST00000555116 RANP62826 216 aaKnown RBP10.25□□□□□ -0.77
SHMT2-217ENST00000555116 LYPD1Q8N2G4 141 aa10.25□□□□□ -0.77
SHMT2-217ENST00000555116 LINC00469Q8N7U9 141 aa10.25□□□□□ -0.77
SHMT2-217ENST00000555116 Q9H3A6 140 aa10.25□□□□□ -0.77
SHMT2-217ENST00000555116 PPP1R14DQ9NXH3 145 aa10.25□□□□□ -0.77
SHMT2-217ENST00000555116 GOLT1BQ9Y3E0 138 aa10.25□□□□□ -0.77
SHMT2-217ENST00000555116 CSMD3Q7Z407 3707 aa10.25□□□□□ -0.77
SHMT2-217ENST00000555116 TRAV12-2A0A075B6T6 113 aa10.24□□□□□ -0.77
SHMT2-217ENST00000555116 IGHV3OR16-12A0A075B7B8 117 aa10.24□□□□□ -0.77
SHMT2-217ENST00000555116 INSP01308 110 aa10.24□□□□□ -0.77
SHMT2-217ENST00000555116 CENPWQ5EE01 88 aa10.24□□□□□ -0.77
SHMT2-217ENST00000555116 DNLZQ5SXM8 178 aa10.24□□□□□ -0.77
SHMT2-217ENST00000555116 IMMP2LQ96T52 175 aa10.24□□□□□ -0.77
SHMT2-217ENST00000555116 A0A1W2PPQ1 181 aa10.23□□□□□ -0.77
SHMT2-217ENST00000555116 SMIM9A6NGZ8 99 aa10.23□□□□□ -0.77
SHMT2-217ENST00000555116 PHOX2AO14813 284 aa10.23□□□□□ -0.77
SHMT2-217ENST00000555116 HIST1H2BKO60814 126 aa10.23□□□□□ -0.77
SHMT2-217ENST00000555116 HIST1H2BJP06899 126 aa10.23□□□□□ -0.77
SHMT2-217ENST00000555116 HIST1H2BOP23527 126 aa10.23□□□□□ -0.77
SHMT2-217ENST00000555116 HIST1H2BBP33778 126 aa10.23□□□□□ -0.77
SHMT2-217ENST00000555116 CDKN1BP46527 198 aa10.23□□□□□ -0.77
SHMT2-217ENST00000555116 GNG4P50150 75 aa10.23□□□□□ -0.77
SHMT2-217ENST00000555116 HIST1H2BDP58876 126 aa10.23□□□□□ -0.77
SHMT2-217ENST00000555116 HIST1H2BCP62807 126 aa10.23□□□□□ -0.77
SHMT2-217ENST00000555116 ERCC8Q13216 396 aa10.23□□□□□ -0.77
SHMT2-217ENST00000555116 HIST2H2BEQ16778 126 aa10.23□□□□□ -0.77
SHMT2-217ENST00000555116 HIST2H2BFQ5QNW6 126 aaPredicted RBP10.23□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 113.9 ms