RNA–Protein interactions for RNA: ENST00000554660.1

VPS33B-204, Transcript of VPS33B, late endosome and lysosome associated, humanhuman

TSL 3

Gene VPS33B, Length 1,055 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33B-204ENST00000554660 Q6AWC8 147 aa8.68□□□□□ -1.02
VPS33B-204ENST00000554660 MRPL54Q6P161 138 aaKnown RBP8.68□□□□□ -1.02
VPS33B-204ENST00000554660 NIT1Q86X76 327 aa8.68□□□□□ -1.02
VPS33B-204ENST00000554660 BORCS7Q96B45 105 aa8.68□□□□□ -1.02
VPS33B-204ENST00000554660 CHCHD1Q96BP2 118 aaKnown RBP8.68□□□□□ -1.02
VPS33B-204ENST00000554660 ALKBH7Q9BT30 221 aaPredicted RBP8.68□□□□□ -1.02
VPS33B-204ENST00000554660 MRPL36Q9P0J6 103 aaKnown RBP8.68□□□□□ -1.02
VPS33B-204ENST00000554660 UQCR10Q9UDW1 63 aa8.68□□□□□ -1.02
VPS33B-204ENST00000554660 ZFP30Q9Y2G7 519 aa8.68□□□□□ -1.02
VPS33B-204ENST00000554660 HERC2O95714 4834 aa8.68□□□□□ -1.02
VPS33B-204ENST00000554660 PCLOQ9Y6V0 5065 aa8.67□□□□□ -1.02
VPS33B-204ENST00000554660 HIGD1CA8MV81 97 aa8.67□□□□□ -1.02
VPS33B-204ENST00000554660 I3L2K1 104 aa8.67□□□□□ -1.02
VPS33B-204ENST00000554660 LGALS1P09382 135 aaKnown RBP8.67□□□□□ -1.02
VPS33B-204ENST00000554660 OR5AL1P0C617 328 aa8.67□□□□□ -1.02
VPS33B-204ENST00000554660 TCL1AP56279 114 aa8.67□□□□□ -1.02
VPS33B-204ENST00000554660 SLAQ13239 276 aa8.67□□□□□ -1.02
VPS33B-204ENST00000554660 PDE6HQ13956 83 aa8.67□□□□□ -1.02
VPS33B-204ENST00000554660 RBPMS2Q6ZRY4 209 aaKnown RBP8.67□□□□□ -1.02
VPS33B-204ENST00000554660 Q8N1Y9 231 aa8.67□□□□□ -1.02
VPS33B-204ENST00000554660 TMEM75Q8N9X5 138 aa8.67□□□□□ -1.02
VPS33B-204ENST00000554660 NPBQ8NG41 125 aa8.67□□□□□ -1.02
VPS33B-204ENST00000554660 OR1B1Q8NGR6 318 aa8.67□□□□□ -1.02
VPS33B-204ENST00000554660 VN1R17PQ8TDU5 208 aa8.67□□□□□ -1.02
VPS33B-204ENST00000554660 SRSF12Q8WXF0 261 aaKnown RBP8.67□□□□□ -1.02
VPS33B-204ENST00000554660 RITA1Q96K30 269 aa8.67□□□□□ -1.02
VPS33B-204ENST00000554660 SPATA25Q9BR10 227 aa8.67□□□□□ -1.02
VPS33B-204ENST00000554660 Q9H3A6 140 aa8.67□□□□□ -1.02
VPS33B-204ENST00000554660 TPSG1Q9NRR2 321 aa8.67□□□□□ -1.02
VPS33B-204ENST00000554660 C19orf73Q9NVV2 129 aa8.67□□□□□ -1.02
VPS33B-204ENST00000554660 F2Z2F3 143 aa8.66□□□□□ -1.02
VPS33B-204ENST00000554660 K7EQM0 130 aa8.66□□□□□ -1.02
VPS33B-204ENST00000554660 HSBP1O75506 76 aa8.66□□□□□ -1.02
VPS33B-204ENST00000554660 NDUFA3O95167 84 aa8.66□□□□□ -1.02
VPS33B-204ENST00000554660 P01737 135 aa8.66□□□□□ -1.02
VPS33B-204ENST00000554660 IGHV3-11P01762 117 aa8.66□□□□□ -1.02
VPS33B-204ENST00000554660 HLA-DRB1P01911 266 aa8.66□□□□□ -1.02
VPS33B-204ENST00000554660 C3orf79P0CE67 100 aa8.66□□□□□ -1.02
VPS33B-204ENST00000554660 ORM2P19652 201 aa8.66□□□□□ -1.02
VPS33B-204ENST00000554660 S100A7P31151 101 aa8.66□□□□□ -1.02
VPS33B-204ENST00000554660 KRTDAPP60985 99 aa8.66□□□□□ -1.02
VPS33B-204ENST00000554660 Q86TA4 180 aa8.66□□□□□ -1.02
VPS33B-204ENST00000554660 NDFIP1Q9BT67 221 aa8.66□□□□□ -1.02
VPS33B-204ENST00000554660 SHANK2-AS3Q9BTD1 123 aa8.66□□□□□ -1.02
VPS33B-204ENST00000554660 RETNQ9HD89 108 aa8.66□□□□□ -1.02
VPS33B-204ENST00000554660 H3BRN7 92 aa8.65□□□□□ -1.02
VPS33B-204ENST00000554660 NBR2O15453 112 aa8.65□□□□□ -1.02
VPS33B-204ENST00000554660 CRXO43186 299 aaPredicted RBP8.65□□□□□ -1.02
VPS33B-204ENST00000554660 SCGB2A1O75556 95 aa8.65□□□□□ -1.02
VPS33B-204ENST00000554660 C5orf64Q2M2E5 130 aa8.65□□□□□ -1.02
VPS33B-204ENST00000554660 C19orf54Q5BKX5 351 aa8.65□□□□□ -1.02
VPS33B-204ENST00000554660 ZNF705AQ6ZN79 300 aaPredicted RBP8.65□□□□□ -1.02
VPS33B-204ENST00000554660 BPIFA4PQ86YQ2 179 aa8.65□□□□□ -1.02
VPS33B-204ENST00000554660 DAZAP1Q96EP5 407 aaKnown RBP8.65□□□□□ -1.02
VPS33B-204ENST00000554660 LINC00479Q96M42 142 aa8.65□□□□□ -1.02
VPS33B-204ENST00000554660 SLC25A39Q9BZJ4 359 aaPredicted RBP8.65□□□□□ -1.02
VPS33B-204ENST00000554660 MRPS16Q9Y3D3 137 aaKnown RBP8.65□□□□□ -1.02
VPS33B-204ENST00000554660 FRAS1Q86XX4 4008 aa8.64□□□□□ -1.03
VPS33B-204ENST00000554660 TRAV34A0A0B4J273 112 aa8.64□□□□□ -1.03
VPS33B-204ENST00000554660 NPIPB5A8MRT5 1133 aa8.64□□□□□ -1.03
VPS33B-204ENST00000554660 A8MZ25 164 aa8.64□□□□□ -1.03
VPS33B-204ENST00000554660 IGLV1-51P01701 117 aa8.64□□□□□ -1.03
VPS33B-204ENST00000554660 IGLC2P0DOY2 106 aa8.64□□□□□ -1.03
VPS33B-204ENST00000554660 IGLC3P0DOY3 106 aa8.64□□□□□ -1.03
VPS33B-204ENST00000554660 PSG1P11464 419 aa8.64□□□□□ -1.03
VPS33B-204ENST00000554660 BTF3P20290 206 aaKnown RBP8.64□□□□□ -1.03
VPS33B-204ENST00000554660 KIAA1644Q3SXP7 199 aa8.64□□□□□ -1.03
VPS33B-204ENST00000554660 COL5A1-AS1Q5SY13 56 aa8.64□□□□□ -1.03
VPS33B-204ENST00000554660 GDF5OSQ5U4N7 250 aa8.64□□□□□ -1.03
VPS33B-204ENST00000554660 COX8CQ7Z4L0 72 aa8.64□□□□□ -1.03
VPS33B-204ENST00000554660 PAM16Q9Y3D7 125 aa8.64□□□□□ -1.03
VPS33B-204ENST00000554660 TRBV19A0A075B6N1 114 aa8.63□□□□□ -1.03
VPS33B-204ENST00000554660 TRAV9-2A0A087WT02 112 aa8.63□□□□□ -1.03
VPS33B-204ENST00000554660 CA1P00915 261 aaPredicted RBP8.63□□□□□ -1.03
VPS33B-204ENST00000554660 IGKV1-17P01599 117 aa8.63□□□□□ -1.03
VPS33B-204ENST00000554660 GNG5P63218 68 aa8.63□□□□□ -1.03
VPS33B-204ENST00000554660 KLK9Q2XQG4 91 aa8.63□□□□□ -1.03
VPS33B-204ENST00000554660 SPATA45Q537H7 98 aa8.63□□□□□ -1.03
VPS33B-204ENST00000554660 FAM110AQ9BQ89 295 aa8.63□□□□□ -1.03
VPS33B-204ENST00000554660 FAM103A1Q9BTL3 118 aaKnown RBP8.63□□□□□ -1.03
VPS33B-204ENST00000554660 KLK9Q9UKQ9 250 aa8.63□□□□□ -1.03
VPS33B-204ENST00000554660 K7EIM0 57 aa8.62□□□□□ -1.03
VPS33B-204ENST00000554660 SPINK4O60575 86 aa8.62□□□□□ -1.03
VPS33B-204ENST00000554660 IGLV2-11P01706 119 aa8.62□□□□□ -1.03
VPS33B-204ENST00000554660 LINC00614P0C842 121 aa8.62□□□□□ -1.03
VPS33B-204ENST00000554660 FCGR2BP31994 310 aaPredicted RBP8.62□□□□□ -1.03
VPS33B-204ENST00000554660 RIGQ13278 110 aa8.62□□□□□ -1.03
VPS33B-204ENST00000554660 PRR27Q6MZM9 219 aa8.62□□□□□ -1.03
VPS33B-204ENST00000554660 BLNKQ8WV28 456 aa8.62□□□□□ -1.03
VPS33B-204ENST00000554660 FBXL15Q9H469 300 aa8.62□□□□□ -1.03
VPS33B-204ENST00000554660 LOC102724200A0A096LPH7 203 aaPredicted RBP8.61□□□□□ -1.03
VPS33B-204ENST00000554660 C2orf70A6NJV1 201 aa8.61□□□□□ -1.03
VPS33B-204ENST00000554660 M0R2Z0 102 aa8.61□□□□□ -1.03
VPS33B-204ENST00000554660 MRPS12O15235 138 aaKnown RBP8.61□□□□□ -1.03
VPS33B-204ENST00000554660 APOHP02749 345 aaPredicted RBP8.61□□□□□ -1.03
VPS33B-204ENST00000554660 EGR2P11161 476 aaPredicted RBP8.61□□□□□ -1.03
VPS33B-204ENST00000554660 CRIP2P52943 208 aaPredicted RBP8.61□□□□□ -1.03
VPS33B-204ENST00000554660 LYZP61626 148 aa8.61□□□□□ -1.03
VPS33B-204ENST00000554660 SIGLEC15Q6ZMC9 328 aa8.61□□□□□ -1.03
VPS33B-204ENST00000554660 GTSF1Q8WW33 167 aa8.61□□□□□ -1.03
Retrieved 100 of 20,778 RNA–protein pairs in 61.6 ms