RNA–Protein interactions for RNA: ENST00000553837.5

SHMT2-207, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 2,152 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-207ENST00000553837 NHP2Q9NX24 153 aaKnown RBP9.56□□□□□ -0.88
SHMT2-207ENST00000553837 DPM3Q9P2X0 92 aa9.56□□□□□ -0.88
SHMT2-207ENST00000553837 HIGD1AQ9Y241 93 aa9.56□□□□□ -0.88
SHMT2-207ENST00000553837 ODF3BA8MYP8 253 aa9.56□□□□□ -0.88
SHMT2-207ENST00000553837 IGLL5B9A064 214 aa9.56□□□□□ -0.88
SHMT2-207ENST00000553837 PRB4P10163 310 aaPredicted RBP9.56□□□□□ -0.88
SHMT2-207ENST00000553837 FXYD7P58549 80 aa9.56□□□□□ -0.88
SHMT2-207ENST00000553837 LYZP61626 148 aa9.56□□□□□ -0.88
SHMT2-207ENST00000553837 ETDBQ3ZM63 59 aa9.56□□□□□ -0.88
SHMT2-207ENST00000553837 EXOC3-AS1Q8N2X6 119 aa9.56□□□□□ -0.88
SHMT2-207ENST00000553837 C18orf15Q96N68 181 aa9.56□□□□□ -0.88
SHMT2-207ENST00000553837 RNF5Q99942 180 aa9.56□□□□□ -0.88
SHMT2-207ENST00000553837 CHD8Q9HCK8 2581 aa9.55□□□□□ -0.88
SHMT2-207ENST00000553837 Q6ZUT4 128 aa9.55□□□□□ -0.88
SHMT2-207ENST00000553837 CDIP1Q9H305 208 aa9.55□□□□□ -0.88
SHMT2-207ENST00000553837 S4R3C0 116 aa9.55□□□□□ -0.88
SHMT2-207ENST00000553837 ITPR1Q14643 2758 aa9.55□□□□□ -0.88
SHMT2-207ENST00000553837 NBR2O15453 112 aa9.54□□□□□ -0.88
SHMT2-207ENST00000553837 ZFP36P26651 326 aaKnown RBP9.54□□□□□ -0.88
SHMT2-207ENST00000553837 GAGE13Q4V321 117 aa9.54□□□□□ -0.88
SHMT2-207ENST00000553837 AMN1Q8IY45 258 aa9.54□□□□□ -0.88
SHMT2-207ENST00000553837 C1QTNF4Q9BXJ3 329 aa9.54□□□□□ -0.88
SHMT2-207ENST00000553837 SLC25A39Q9BZJ4 359 aaPredicted RBP9.54□□□□□ -0.88
SHMT2-207ENST00000553837 ZMAT4Q9H898 229 aa9.54□□□□□ -0.88
SHMT2-207ENST00000553837 TRBV25-1A0A075B6N4 114 aa9.54□□□□□ -0.88
SHMT2-207ENST00000553837 WI2-2373I1.2A0A1W2PRP0 233 aa9.54□□□□□ -0.88
SHMT2-207ENST00000553837 MRPL51Q4U2R6 128 aaKnown RBP9.54□□□□□ -0.88
SHMT2-207ENST00000553837 LYZL1Q6UWQ5 148 aa9.54□□□□□ -0.88
SHMT2-207ENST00000553837 SH2D6Q7Z4S9 175 aa9.54□□□□□ -0.88
SHMT2-207ENST00000553837 TIMD4Q96H15 378 aa9.54□□□□□ -0.88
SHMT2-207ENST00000553837 HHLA3Q9XRX5 114 aa9.54□□□□□ -0.88
SHMT2-207ENST00000553837 NCOR2Q9Y618 2525 aa9.53□□□□□ -0.88
SHMT2-207ENST00000553837 IGKV2D-26A0A0A0MRZ7 120 aa9.53□□□□□ -0.88
SHMT2-207ENST00000553837 H3BMG7 143 aa9.53□□□□□ -0.88
SHMT2-207ENST00000553837 NDUFA3O95167 84 aa9.53□□□□□ -0.88
SHMT2-207ENST00000553837 IGHG4P01861 327 aa9.53□□□□□ -0.88
SHMT2-207ENST00000553837 PRTN3P24158 256 aa9.53□□□□□ -0.88
SHMT2-207ENST00000553837 CKS2P33552 79 aa9.53□□□□□ -0.88
SHMT2-207ENST00000553837 LY6DQ14210 128 aa9.53□□□□□ -0.88
SHMT2-207ENST00000553837 TAL2Q16559 108 aa9.53□□□□□ -0.88
SHMT2-207ENST00000553837 NPBQ8NG41 125 aa9.53□□□□□ -0.88
SHMT2-207ENST00000553837 ARPC1AQ92747 370 aa9.53□□□□□ -0.88
SHMT2-207ENST00000553837 C17orf77Q96MU5 243 aa9.53□□□□□ -0.88
SHMT2-207ENST00000553837 MED13LQ71F56 2210 aa9.53□□□□□ -0.88
SHMT2-207ENST00000553837 SPTBN1Q01082 2364 aaKnown RBP9.53□□□□□ -0.88
SHMT2-207ENST00000553837 M0R1W7 72 aa9.53□□□□□ -0.88
SHMT2-207ENST00000553837 APOMO95445 188 aa9.53□□□□□ -0.88
SHMT2-207ENST00000553837 HLA-DRB4P13762 266 aa9.53□□□□□ -0.88
SHMT2-207ENST00000553837 EVI2AP22794 236 aa9.53□□□□□ -0.88
SHMT2-207ENST00000553837 CRIP1P50238 77 aa9.53□□□□□ -0.88
SHMT2-207ENST00000553837 NDPQ00604 133 aa9.53□□□□□ -0.88
SHMT2-207ENST00000553837 FOXI1Q12951 378 aa9.53□□□□□ -0.88
SHMT2-207ENST00000553837 LINC01559Q495D7 138 aa9.53□□□□□ -0.88
SHMT2-207ENST00000553837 ZFAND6Q6FIF0 208 aa9.53□□□□□ -0.88
SHMT2-207ENST00000553837 SYT8Q8NBV8 401 aa9.53□□□□□ -0.88
SHMT2-207ENST00000553837 RASL11BQ9BPW5 248 aa9.53□□□□□ -0.88
SHMT2-207ENST00000553837 HLA-DRB4X5D2U9 266 aa9.53□□□□□ -0.88
SHMT2-207ENST00000553837 HIVEP3Q5T1R4 2406 aa9.52□□□□□ -0.88
SHMT2-207ENST00000553837 TMEM213A2RRL7 107 aa9.52□□□□□ -0.89
SHMT2-207ENST00000553837 IGKCP01834 107 aa9.52□□□□□ -0.89
SHMT2-207ENST00000553837 HES1Q14469 280 aa9.52□□□□□ -0.89
SHMT2-207ENST00000553837 MT-ATP8P03928 68 aa9.51□□□□□ -0.89
SHMT2-207ENST00000553837 C12orf74Q32Q52 190 aa9.51□□□□□ -0.89
SHMT2-207ENST00000553837 VMO1Q7Z5L0 202 aa9.51□□□□□ -0.89
SHMT2-207ENST00000553837 DTX2Q86UW9 622 aa9.51□□□□□ -0.89
SHMT2-207ENST00000553837 WFDC3Q8IUB2 231 aa9.51□□□□□ -0.89
SHMT2-207ENST00000553837 LYPD1Q8N2G4 141 aa9.51□□□□□ -0.89
SHMT2-207ENST00000553837 FANCD2OSQ96PS1 177 aa9.51□□□□□ -0.89
SHMT2-207ENST00000553837 ASCL2Q99929 193 aa9.51□□□□□ -0.89
SHMT2-207ENST00000553837 C20orf78Q9BR46 151 aa9.51□□□□□ -0.89
SHMT2-207ENST00000553837 ZFHX3Q15911 3703 aa9.51□□□□□ -0.89
SHMT2-207ENST00000553837 GAGE12JA6NER3 117 aa9.51□□□□□ -0.89
SHMT2-207ENST00000553837 NPIPB5A8MRT5 1133 aa9.51□□□□□ -0.89
SHMT2-207ENST00000553837 GAGE7O76087 117 aa9.51□□□□□ -0.89
SHMT2-207ENST00000553837 NPYP01303 97 aa9.51□□□□□ -0.89
SHMT2-207ENST00000553837 PRSS1P07477 247 aa9.51□□□□□ -0.89
SHMT2-207ENST00000553837 GAGE12FP0CL80 117 aa9.51□□□□□ -0.89
SHMT2-207ENST00000553837 GAGE12GP0CL81 117 aa9.51□□□□□ -0.89
SHMT2-207ENST00000553837 GAGE12IP0CL82 117 aa9.51□□□□□ -0.89
SHMT2-207ENST00000553837 GAGE4Q13068 117 aa9.51□□□□□ -0.89
SHMT2-207ENST00000553837 ZNF491Q8N8L2 437 aa9.51□□□□□ -0.89
SHMT2-207ENST00000553837 SRSF8Q9BRL6 282 aaKnown RBP9.51□□□□□ -0.89
SHMT2-207ENST00000553837 PRO0461Q9UI25 63 aa9.51□□□□□ -0.89
SHMT2-207ENST00000553837 TRBV19A0A075B6N1 114 aa9.5□□□□□ -0.89
SHMT2-207ENST00000553837 F8W735 103 aaPredicted RBP9.5□□□□□ -0.89
SHMT2-207ENST00000553837 FCER1GP30273 86 aa9.5□□□□□ -0.89
SHMT2-207ENST00000553837 TEX29Q8N6K0 151 aa9.5□□□□□ -0.89
SHMT2-207ENST00000553837 TTTY13Q9BZ97 58 aa9.5□□□□□ -0.89
SHMT2-207ENST00000553837 LINC01546A6NGU7 62 aa9.5□□□□□ -0.89
SHMT2-207ENST00000553837 DPM2O94777 84 aa9.5□□□□□ -0.89
SHMT2-207ENST00000553837 LEPP41159 167 aa9.5□□□□□ -0.89
SHMT2-207ENST00000553837 XGP55808 180 aa9.5□□□□□ -0.89
SHMT2-207ENST00000553837 Q8N6K4 173 aa9.5□□□□□ -0.89
SHMT2-207ENST00000553837 SHANK2-AS3Q9BTD1 123 aa9.5□□□□□ -0.89
SHMT2-207ENST00000553837 MAP1LC3AQ9H492 121 aa9.5□□□□□ -0.89
SHMT2-207ENST00000553837 VPS13CQ709C8 3753 aa9.49□□□□□ -0.89
SHMT2-207ENST00000553837 WNK2Q9Y3S1 2297 aa9.49□□□□□ -0.89
SHMT2-207ENST00000553837 IGLV11-55A0A075B6I3 123 aa9.49□□□□□ -0.89
SHMT2-207ENST00000553837 H3BRN7 92 aa9.49□□□□□ -0.89
SHMT2-207ENST00000553837 MRPS12O15235 138 aaKnown RBP9.49□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 36.4 ms