RNA–Protein interactions for RNA: ENST00000551623.1

PTCH1-223, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 366 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-223ENST00000551623 H3BRN7 92 aa1.32□□□□□ -2.2
PTCH1-223ENST00000551623 K7EPK0 472 aa1.32□□□□□ -2.2
PTCH1-223ENST00000551623 GPR31O00270 319 aa1.32□□□□□ -2.2
PTCH1-223ENST00000551623 ZNF253O75346 499 aa1.32□□□□□ -2.2
PTCH1-223ENST00000551623 IGHV3-53P01767 116 aa1.32□□□□□ -2.2
PTCH1-223ENST00000551623 SFTA3P0C7M3 94 aa1.32□□□□□ -2.2
PTCH1-223ENST00000551623 HSMCR30P0CW71 290 aa1.32□□□□□ -2.2
PTCH1-223ENST00000551623 CT45A10P0DMU9 189 aa1.32□□□□□ -2.2
PTCH1-223ENST00000551623 CRYGAP11844 174 aa1.32□□□□□ -2.2
PTCH1-223ENST00000551623 RPL7P18124 248 aaKnown RBP1.32□□□□□ -2.2
PTCH1-223ENST00000551623 CALB2P22676 271 aa1.32□□□□□ -2.2
PTCH1-223ENST00000551623 S100A7P31151 101 aa1.32□□□□□ -2.2
PTCH1-223ENST00000551623 GPX4P36969 197 aaPredicted RBP1.32□□□□□ -2.2
PTCH1-223ENST00000551623 LEPP41159 167 aa1.32□□□□□ -2.2
PTCH1-223ENST00000551623 PLP1P60201 277 aa1.32□□□□□ -2.2
PTCH1-223ENST00000551623 RND3P61587 244 aa1.32□□□□□ -2.2
PTCH1-223ENST00000551623 RHOBP62745 196 aa1.32□□□□□ -2.2
PTCH1-223ENST00000551623 ZNF90Q03938 601 aa1.32□□□□□ -2.2
PTCH1-223ENST00000551623 ELOBQ15370 118 aa1.32□□□□□ -2.2
PTCH1-223ENST00000551623 LCN15Q6UWW0 184 aa1.32□□□□□ -2.2
PTCH1-223ENST00000551623 TMEM17Q86X19 198 aa1.32□□□□□ -2.2
PTCH1-223ENST00000551623 FAM219AQ8IW50 185 aa1.32□□□□□ -2.2
PTCH1-223ENST00000551623 ZFAND2AQ8N6M9 145 aa1.32□□□□□ -2.2
PTCH1-223ENST00000551623 SLC25A29Q8N8R3 303 aa1.32□□□□□ -2.2
PTCH1-223ENST00000551623 BPIFCQ8NFQ6 507 aa1.32□□□□□ -2.2
PTCH1-223ENST00000551623 MARCH1Q8TCQ1 289 aa1.32□□□□□ -2.2
PTCH1-223ENST00000551623 MRGPRFQ96AM1 343 aa1.32□□□□□ -2.2
PTCH1-223ENST00000551623 TMEM80Q96HE8 168 aa1.32□□□□□ -2.2
PTCH1-223ENST00000551623 DNAJC30Q96LL9 226 aa1.32□□□□□ -2.2
PTCH1-223ENST00000551623 MGLLQ99685 303 aa1.32□□□□□ -2.2
PTCH1-223ENST00000551623 SLC50A1Q9BRV3 221 aa1.32□□□□□ -2.2
PTCH1-223ENST00000551623 SHANK2-AS3Q9BTD1 123 aa1.32□□□□□ -2.2
PTCH1-223ENST00000551623 PBDC1Q9BVG4 233 aa1.32□□□□□ -2.2
PTCH1-223ENST00000551623 OR51M1Q9H341 326 aa1.32□□□□□ -2.2
PTCH1-223ENST00000551623 MRPL16Q9NX20 251 aaKnown RBP1.32□□□□□ -2.2
PTCH1-223ENST00000551623 POMPQ9Y244 141 aa1.32□□□□□ -2.2
PTCH1-223ENST00000551623 LSM2Q9Y333 95 aaKnown RBP1.32□□□□□ -2.2
PTCH1-223ENST00000551623 V9GY05 133 aa1.32□□□□□ -2.2
PTCH1-223ENST00000551623 IGLV10-54A0A075B6I4 117 aa1.31□□□□□ -2.2
PTCH1-223ENST00000551623 IGKV2D-24A0A075B6R9 120 aa1.31□□□□□ -2.2
PTCH1-223ENST00000551623 TRAV16A0A0A6YYK6 109 aaPredicted RBP1.31□□□□□ -2.2
PTCH1-223ENST00000551623 A0A0G2JRQ6 117 aa1.31□□□□□ -2.2
PTCH1-223ENST00000551623 ZFP92A6NM28 416 aa1.31□□□□□ -2.2
PTCH1-223ENST00000551623 PRSS46E5RG02 174 aa1.31□□□□□ -2.2
PTCH1-223ENST00000551623 ANKRD65E5RJM6 399 aa1.31□□□□□ -2.2
PTCH1-223ENST00000551623 CASQ2O14958 399 aaPredicted RBP1.31□□□□□ -2.2
PTCH1-223ENST00000551623 BCL2L11O43521 198 aa1.31□□□□□ -2.2
PTCH1-223ENST00000551623 MPDU1O75352 247 aa1.31□□□□□ -2.2
PTCH1-223ENST00000551623 PITX3O75364 302 aa1.31□□□□□ -2.2
PTCH1-223ENST00000551623 B3GALNT1O75752 331 aa1.31□□□□□ -2.2
PTCH1-223ENST00000551623 ATG12O94817 140 aa1.31□□□□□ -2.2
PTCH1-223ENST00000551623 TCRBP04435 133 aa1.31□□□□□ -2.2
PTCH1-223ENST00000551623 OR10J4P0C629 311 aa1.31□□□□□ -2.2
PTCH1-223ENST00000551623 SMIM18P0DKX4 95 aa1.31□□□□□ -2.2
PTCH1-223ENST00000551623 MGST1P10620 155 aaKnown RBP1.31□□□□□ -2.2
PTCH1-223ENST00000551623 CBX5P45973 191 aa1.31□□□□□ -2.2
PTCH1-223ENST00000551623 TAS2R20P59543 309 aa1.31□□□□□ -2.2
PTCH1-223ENST00000551623 FXYD4P59646 89 aa1.31□□□□□ -2.2
PTCH1-223ENST00000551623 GNG2P59768 71 aa1.31□□□□□ -2.2
PTCH1-223ENST00000551623 HERV-K104P61576 105 aa1.31□□□□□ -2.2
PTCH1-223ENST00000551623 LYZP61626 148 aa1.31□□□□□ -2.2
PTCH1-223ENST00000551623 POLR2GP62487 172 aaKnown RBP eCLIP1.31□□□□□ -2.2
PTCH1-223ENST00000551623 VAMP2P63027 116 aa1.31□□□□□ -2.2
PTCH1-223ENST00000551623 TRAM1Q15629 374 aa1.31□□□□□ -2.2
PTCH1-223ENST00000551623 RHOHQ15669 191 aa1.31□□□□□ -2.2
PTCH1-223ENST00000551623 MIAQ16674 131 aa1.31□□□□□ -2.2
PTCH1-223ENST00000551623 VWC2Q2TAL6 325 aa1.31□□□□□ -2.2
PTCH1-223ENST00000551623 SPINK9Q5DT21 86 aa1.31□□□□□ -2.2
PTCH1-223ENST00000551623 LPCAT3Q6P1A2 487 aa1.31□□□□□ -2.2
PTCH1-223ENST00000551623 ENHOQ6UWT2 76 aa1.31□□□□□ -2.2
PTCH1-223ENST00000551623 SPATA24Q86W54 205 aa1.31□□□□□ -2.2
PTCH1-223ENST00000551623 LGI3Q8N145 548 aa1.31□□□□□ -2.2
PTCH1-223ENST00000551623 ARRDC1Q8N5I2 433 aa1.31□□□□□ -2.2
PTCH1-223ENST00000551623 CYB561D1Q8N8Q1 229 aa1.31□□□□□ -2.2
PTCH1-223ENST00000551623 FER1L6-AS1Q8NA97 138 aa1.31□□□□□ -2.2
PTCH1-223ENST00000551623 NHLRC2Q8NBF2 726 aa1.31□□□□□ -2.2
PTCH1-223ENST00000551623 TSPAN14Q8NG11 270 aa1.31□□□□□ -2.2
PTCH1-223ENST00000551623 PTH2Q96A98 100 aa1.31□□□□□ -2.2
PTCH1-223ENST00000551623 MRPL53Q96EL3 112 aaKnown RBP1.31□□□□□ -2.2
PTCH1-223ENST00000551623 SAT2Q96F10 170 aaPredicted RBP1.31□□□□□ -2.2
PTCH1-223ENST00000551623 ACY3Q96HD9 319 aa1.31□□□□□ -2.2
PTCH1-223ENST00000551623 PARD6GQ9BYG4 376 aaPredicted RBP1.31□□□□□ -2.2
PTCH1-223ENST00000551623 FXYD6Q9H0Q3 95 aa1.31□□□□□ -2.2
PTCH1-223ENST00000551623 TMEM222Q9H0R3 208 aa1.31□□□□□ -2.2
PTCH1-223ENST00000551623 RPP21Q9H633 154 aaKnown RBP1.31□□□□□ -2.2
PTCH1-223ENST00000551623 FKBP14Q9NWM8 211 aa1.31□□□□□ -2.2
PTCH1-223ENST00000551623 LINC00474Q9P2X8 69 aa1.31□□□□□ -2.2
PTCH1-223ENST00000551623 RNF24Q9Y225 148 aa1.31□□□□□ -2.2
PTCH1-223ENST00000551623 CARHSP1Q9Y2V2 147 aaKnown RBP1.31□□□□□ -2.2
PTCH1-223ENST00000551623 RRP15Q9Y3B9 282 aaKnown RBP1.31□□□□□ -2.2
PTCH1-223ENST00000551623 AK6Q9Y3D8 172 aaKnown RBP1.31□□□□□ -2.2
PTCH1-223ENST00000551623 AP4S1Q9Y587 144 aa1.31□□□□□ -2.2
PTCH1-223ENST00000551623 U3KQ87 197 aa1.31□□□□□ -2.2
PTCH1-223ENST00000551623 FCGBPQ9Y6R7 5405 aaPredicted RBP1.31□□□□□ -2.2
PTCH1-223ENST00000551623 TRAV6A0A075B6T7 132 aa1.3□□□□□ -2.2
PTCH1-223ENST00000551623 TRAV1-1A0A0B4J248 108 aa1.3□□□□□ -2.2
PTCH1-223ENST00000551623 MUC21A0A0G2JKD1 596 aa1.3□□□□□ -2.2
PTCH1-223ENST00000551623 LOC100130705A0A1B0GUX0 176 aa1.3□□□□□ -2.2
PTCH1-223ENST00000551623 FBLL1A6NHQ2 334 aaKnown RBP1.3□□□□□ -2.2
PTCH1-223ENST00000551623 H0Y9J4 135 aa1.3□□□□□ -2.2
Retrieved 100 of 20,778 RNA–protein pairs in 38.5 ms