RNA–Protein interactions for RNA: ENST00000545856.5

PRPF40A-212, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 1 (best)

Gene PRPF40A, Length 1,358 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-212ENST00000545856 TRAV21A0A0B4J279 112 aa11.77□□□□□ -0.53
PRPF40A-212ENST00000545856 GCGP01275 180 aa11.77□□□□□ -0.53
PRPF40A-212ENST00000545856 INSP01308 110 aa11.77□□□□□ -0.53
PRPF40A-212ENST00000545856 IGLV2-8P01709 118 aa11.77□□□□□ -0.53
PRPF40A-212ENST00000545856 PFN1P07737 140 aaKnown RBP11.77□□□□□ -0.53
PRPF40A-212ENST00000545856 FAM162BQ5T6X4 162 aa11.77□□□□□ -0.53
PRPF40A-212ENST00000545856 FAM231DQ6ZW35 169 aa11.77□□□□□ -0.53
PRPF40A-212ENST00000545856 CSTL1Q9H114 145 aa11.77□□□□□ -0.53
PRPF40A-212ENST00000545856 WFDC10AQ9H1F0 79 aa11.77□□□□□ -0.53
PRPF40A-212ENST00000545856 SDF2L1Q9HCN8 221 aa11.77□□□□□ -0.53
PRPF40A-212ENST00000545856 C7orf71A4D174 169 aa11.76□□□□□ -0.53
PRPF40A-212ENST00000545856 RBMY1BA6NDE4 496 aaKnown RBP11.76□□□□□ -0.53
PRPF40A-212ENST00000545856 RBMY1EA6NEQ0 496 aaKnown RBP11.76□□□□□ -0.53
PRPF40A-212ENST00000545856 FABP5P3A8MUU1 101 aa11.76□□□□□ -0.53
PRPF40A-212ENST00000545856 B4DEV8 164 aa11.76□□□□□ -0.53
PRPF40A-212ENST00000545856 RBMY1DP0C7P1 496 aaKnown RBP11.76□□□□□ -0.53
PRPF40A-212ENST00000545856 ADCYAP1P18509 176 aa11.75□□□□□ -0.53
PRPF40A-212ENST00000545856 SLC7A5P1Q8MH63 180 aa11.75□□□□□ -0.53
PRPF40A-212ENST00000545856 OCC1Q8TAD7 63 aa11.75□□□□□ -0.53
PRPF40A-212ENST00000545856 SGK494Q96LW2 274 aa11.75□□□□□ -0.53
PRPF40A-212ENST00000545856 LINC00467Q9BRT7 94 aa11.75□□□□□ -0.53
PRPF40A-212ENST00000545856 AURKAIP1Q9NWT8 199 aaPredicted RBP11.75□□□□□ -0.53
PRPF40A-212ENST00000545856 IGKV3-20P01619 116 aa11.74□□□□□ -0.53
PRPF40A-212ENST00000545856 RPL23P62829 140 aaKnown RBP11.74□□□□□ -0.53
PRPF40A-212ENST00000545856 SPINK13Q1W4C9 94 aa11.74□□□□□ -0.53
PRPF40A-212ENST00000545856 GFI1BQ5VTD9 330 aa11.74□□□□□ -0.53
PRPF40A-212ENST00000545856 Q6ZWC4 215 aa11.74□□□□□ -0.53
PRPF40A-212ENST00000545856 SVBPQ8N300 66 aa11.74□□□□□ -0.53
PRPF40A-212ENST00000545856 DAZAP1Q96EP5 407 aaKnown RBP11.74□□□□□ -0.53
PRPF40A-212ENST00000545856 ZC2HC1AQ96GY0 325 aa11.74□□□□□ -0.53
PRPF40A-212ENST00000545856 KCNS1Q96KK3 526 aa11.74□□□□□ -0.53
PRPF40A-212ENST00000545856 H7BYZ3 331 aa11.73□□□□□ -0.53
PRPF40A-212ENST00000545856 PPP1R2P9O14990 202 aa11.73□□□□□ -0.53
PRPF40A-212ENST00000545856 CRXO43186 299 aaPredicted RBP11.73□□□□□ -0.53
PRPF40A-212ENST00000545856 CXCL1P09341 107 aa11.73□□□□□ -0.53
PRPF40A-212ENST00000545856 MGST1P10620 155 aaKnown RBP11.73□□□□□ -0.53
PRPF40A-212ENST00000545856 TDRG1Q3Y452 100 aa11.73□□□□□ -0.53
PRPF40A-212ENST00000545856 CT83Q5H943 113 aa11.73□□□□□ -0.53
PRPF40A-212ENST00000545856 ISOC2Q96AB3 205 aa11.73□□□□□ -0.53
PRPF40A-212ENST00000545856 PYGO2Q9BRQ0 406 aa11.73□□□□□ -0.53
PRPF40A-212ENST00000545856 OSTCQ9NRP0 149 aa11.73□□□□□ -0.53
PRPF40A-212ENST00000545856 C19orf71A6NCJ1 209 aa11.72□□□□□ -0.53
PRPF40A-212ENST00000545856 M0R2Z0 102 aa11.72□□□□□ -0.53
PRPF40A-212ENST00000545856 CA1P00915 261 aaPredicted RBP11.72□□□□□ -0.53
PRPF40A-212ENST00000545856 ADIRFQ15847 76 aa11.72□□□□□ -0.53
PRPF40A-212ENST00000545856 C15orf54Q8N8G6 183 aa11.72□□□□□ -0.53
PRPF40A-212ENST00000545856 C8orf49Q96NF6 230 aa11.72□□□□□ -0.53
PRPF40A-212ENST00000545856 TP53TG1Q9Y2A0 90 aa11.72□□□□□ -0.53
PRPF40A-212ENST00000545856 GOLT1BQ9Y3E0 138 aa11.72□□□□□ -0.53
PRPF40A-212ENST00000545856 XKRY2A2RUG3 117 aa11.71□□□□□ -0.53
PRPF40A-212ENST00000545856 ZNF324O75467 553 aaPredicted RBP11.71□□□□□ -0.53
PRPF40A-212ENST00000545856 SNAPINO95295 136 aa11.71□□□□□ -0.53
PRPF40A-212ENST00000545856 RPL35AP18077 110 aaKnown RBP11.71□□□□□ -0.53
PRPF40A-212ENST00000545856 S100A1P23297 94 aa11.71□□□□□ -0.53
PRPF40A-212ENST00000545856 RPS20P60866 119 aaKnown RBP11.71□□□□□ -0.53
PRPF40A-212ENST00000545856 RHEBQ15382 184 aa11.71□□□□□ -0.53
PRPF40A-212ENST00000545856 LINC01559Q495D7 138 aa11.71□□□□□ -0.53
PRPF40A-212ENST00000545856 IBA57Q5T440 356 aaKnown RBP11.71□□□□□ -0.53
PRPF40A-212ENST00000545856 K7EIL1 84 aa11.7□□□□□ -0.54
PRPF40A-212ENST00000545856 K7EN84 100 aa11.7□□□□□ -0.54
PRPF40A-212ENST00000545856 P01737 135 aa11.7□□□□□ -0.54
PRPF40A-212ENST00000545856 MT-ND4LP03901 98 aa11.7□□□□□ -0.54
PRPF40A-212ENST00000545856 RNASE4P34096 147 aaKnown RBP11.7□□□□□ -0.54
PRPF40A-212ENST00000545856 NHLRC2Q8NBF2 726 aa11.7□□□□□ -0.54
PRPF40A-212ENST00000545856 CSNK1G2-AS1Q8NCQ2 148 aa11.7□□□□□ -0.54
PRPF40A-212ENST00000545856 ANAPC16Q96DE5 110 aa11.7□□□□□ -0.54
PRPF40A-212ENST00000545856 SFRP2Q96HF1 295 aa11.7□□□□□ -0.54
PRPF40A-212ENST00000545856 NEU1Q99519 415 aa11.7□□□□□ -0.54
PRPF40A-212ENST00000545856 FAM231BA6NCW3 169 aa11.69□□□□□ -0.54
PRPF40A-212ENST00000545856 PGPEP1LA6NFU8 196 aa11.69□□□□□ -0.54
PRPF40A-212ENST00000545856 SMIM9A6NGZ8 99 aa11.69□□□□□ -0.54
PRPF40A-212ENST00000545856 SH2D1AO60880 128 aa11.69□□□□□ -0.54
PRPF40A-212ENST00000545856 GIG44P09565 113 aaPredicted RBP11.69□□□□□ -0.54
PRPF40A-212ENST00000545856 FRMD6-AS1P0C7T7 363 aa11.69□□□□□ -0.54
PRPF40A-212ENST00000545856 ERVFC1-1P60608 527 aa11.69□□□□□ -0.54
PRPF40A-212ENST00000545856 BTN1A1Q13410 526 aa11.69□□□□□ -0.54
PRPF40A-212ENST00000545856 PRR9Q5T870 116 aa11.69□□□□□ -0.54
PRPF40A-212ENST00000545856 PRR27Q6MZM9 219 aa11.69□□□□□ -0.54
PRPF40A-212ENST00000545856 ZNF705AQ6ZN79 300 aaPredicted RBP11.69□□□□□ -0.54
PRPF40A-212ENST00000545856 CTDSP1Q9GZU7 261 aa11.69□□□□□ -0.54
PRPF40A-212ENST00000545856 TMEM242Q9NWH2 141 aa11.69□□□□□ -0.54
PRPF40A-212ENST00000545856 XCL2Q9UBD3 114 aa11.69□□□□□ -0.54
PRPF40A-212ENST00000545856 APOC3P02656 99 aa11.68□□□□□ -0.54
PRPF40A-212ENST00000545856 CRIP1P50238 77 aa11.68□□□□□ -0.54
PRPF40A-212ENST00000545856 ZNF80P51504 273 aaPredicted RBP11.68□□□□□ -0.54
PRPF40A-212ENST00000545856 ANXA2RQ3ZCQ2 193 aa11.68□□□□□ -0.54
PRPF40A-212ENST00000545856 FAM159AQ6UWV7 190 aa11.68□□□□□ -0.54
PRPF40A-212ENST00000545856 TP53TG3Q9ULZ0 132 aa11.68□□□□□ -0.54
PRPF40A-212ENST00000545856 TRGV11A0A075B6L2 103 aa11.67□□□□□ -0.54
PRPF40A-212ENST00000545856 TRAV12-2A0A075B6T6 113 aa11.67□□□□□ -0.54
PRPF40A-212ENST00000545856 IGHV1OR15-1A0A075B7D0 117 aa11.67□□□□□ -0.54
PRPF40A-212ENST00000545856 A0A087WWC5 75 aa11.67□□□□□ -0.54
PRPF40A-212ENST00000545856 TRAV12-3A0A0B4J271 114 aa11.67□□□□□ -0.54
PRPF40A-212ENST00000545856 PRB4P10163 310 aaPredicted RBP11.67□□□□□ -0.54
PRPF40A-212ENST00000545856 DNLZQ5SXM8 178 aa11.67□□□□□ -0.54
PRPF40A-212ENST00000545856 OR10G8Q8NGN5 311 aa11.67□□□□□ -0.54
PRPF40A-212ENST00000545856 TMEM208Q9BTX3 173 aa11.67□□□□□ -0.54
PRPF40A-212ENST00000545856 RPP21Q9H633 154 aaKnown RBP11.67□□□□□ -0.54
PRPF40A-212ENST00000545856 A8MWL6 223 aa11.67□□□□□ -0.54
PRPF40A-212ENST00000545856 M0R036 132 aa11.67□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 65.1 ms