RNA–Protein interactions for RNA: ENST00000544301.6

VIM-209, Transcript of vimentin, humanhuman

APPRIS P1 TSL 1 (best)

Gene VIM, Length 2,135 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-209ENST00000544301 Q6ZS46 218 aa13.76□□□□□ -0.21
VIM-209ENST00000544301 SPOCK3Q9BQ16 436 aa13.76□□□□□ -0.21
VIM-209ENST00000544301 KLK15Q9H2R5 256 aa13.76□□□□□ -0.21
VIM-209ENST00000544301 UTP20O75691 2785 aaKnown RBP13.76□□□□□ -0.21
VIM-209ENST00000544301 NCR2O95944 276 aa13.76□□□□□ -0.21
VIM-209ENST00000544301 AVPP01185 164 aa13.76□□□□□ -0.21
VIM-209ENST00000544301 C20orf173Q96LM9 149 aa13.76□□□□□ -0.21
VIM-209ENST00000544301 PPP1R14DQ9NXH3 145 aa13.76□□□□□ -0.21
VIM-209ENST00000544301 IGHV3-11P01762 117 aa13.75□□□□□ -0.21
VIM-209ENST00000544301 ZNF25P17030 456 aaPredicted RBP13.75□□□□□ -0.21
VIM-209ENST00000544301 C9orf139Q6ZV77 190 aa13.75□□□□□ -0.21
VIM-209ENST00000544301 STPG4Q8N801 248 aa13.75□□□□□ -0.21
VIM-209ENST00000544301 B4DSR2 109 aa13.75□□□□□ -0.21
VIM-209ENST00000544301 TFPI2P48307 235 aa13.75□□□□□ -0.21
VIM-209ENST00000544301 GPHB5Q86YW7 130 aa13.75□□□□□ -0.21
VIM-209ENST00000544301 PMCHL2Q9BQD1 86 aa13.75□□□□□ -0.21
VIM-209ENST00000544301 PF4V1P10720 104 aa13.74□□□□□ -0.21
VIM-209ENST00000544301 PRSS57Q6UWY2 283 aa13.74□□□□□ -0.21
VIM-209ENST00000544301 NRGNQ92686 78 aa13.74□□□□□ -0.21
VIM-209ENST00000544301 HSBP1L1C9JCN9 74 aa13.73□□□□□ -0.21
VIM-209ENST00000544301 PPBPP02775 128 aa13.73□□□□□ -0.21
VIM-209ENST00000544301 FOXE3Q13461 319 aa13.73□□□□□ -0.21
VIM-209ENST00000544301 Q6ZQT7 251 aa13.73□□□□□ -0.21
VIM-209ENST00000544301 ZNF738Q8NE65 137 aa13.73□□□□□ -0.21
VIM-209ENST00000544301 OR4X2Q8NGF9 303 aa13.73□□□□□ -0.21
VIM-209ENST00000544301 CRYBG3Q68DQ2 2970 aa13.72□□□□□ -0.21
VIM-209ENST00000544301 TCF21O43680 179 aa13.72□□□□□ -0.21
VIM-209ENST00000544301 IGLV1-40P01703 118 aa13.72□□□□□ -0.21
VIM-209ENST00000544301 LCNL1Q6ZST4 164 aa13.72□□□□□ -0.21
VIM-209ENST00000544301 TP73-AS1Q9UF72 201 aa13.72□□□□□ -0.21
VIM-209ENST00000544301 SOCS3O14543 225 aa13.72□□□□□ -0.21
VIM-209ENST00000544301 GAS8-AS1O95177 125 aa13.72□□□□□ -0.21
VIM-209ENST00000544301 HINT1P49773 126 aaPredicted RBP13.72□□□□□ -0.21
VIM-209ENST00000544301 FXYD7P58549 80 aa13.72□□□□□ -0.21
VIM-209ENST00000544301 DSCR9P59020 149 aa13.72□□□□□ -0.21
VIM-209ENST00000544301 TMEM208Q9BTX3 173 aa13.72□□□□□ -0.21
VIM-209ENST00000544301 NPFFR1Q9GZQ6 430 aa13.72□□□□□ -0.21
VIM-209ENST00000544301 IGHV7-4-1A0A0J9YVY3 117 aa13.71□□□□□ -0.21
VIM-209ENST00000544301 HBDP02042 147 aa13.71□□□□□ -0.21
VIM-209ENST00000544301 OR8A1Q8NGG7 326 aa13.71□□□□□ -0.21
VIM-209ENST00000544301 MS4A6AQ9H2W1 248 aa13.71□□□□□ -0.21
VIM-209ENST00000544301 SCRT2Q9NQ03 307 aa13.71□□□□□ -0.21
VIM-209ENST00000544301 LENEPQ9Y5L5 61 aa13.71□□□□□ -0.21
VIM-209ENST00000544301 CFHR3Q02985 330 aa13.7□□□□□ -0.22
VIM-209ENST00000544301 PRR9Q5T870 116 aa13.7□□□□□ -0.22
VIM-209ENST00000544301 A0A0G2JLM5 398 aa13.7□□□□□ -0.22
VIM-209ENST00000544301 GATA3P23771 443 aa13.7□□□□□ -0.22
VIM-209ENST00000544301 MAP1LC3AQ9H492 121 aa13.7□□□□□ -0.22
VIM-209ENST00000544301 MYO18BQ8IUG5 2567 aa13.69□□□□□ -0.22
VIM-209ENST00000544301 ACACBO00763 2458 aa13.69□□□□□ -0.22
VIM-209ENST00000544301 SLC25A34Q6PIV7 304 aa13.69□□□□□ -0.22
VIM-209ENST00000544301 LINC00477Q96M19 166 aa13.69□□□□□ -0.22
VIM-209ENST00000544301 LINC01546A6NGU7 62 aa13.69□□□□□ -0.22
VIM-209ENST00000544301 TNFRSF6BO95407 300 aa13.69□□□□□ -0.22
VIM-209ENST00000544301 OVOL1O14753 267 aa13.68□□□□□ -0.22
VIM-209ENST00000544301 DLEU1O43261 78 aa13.68□□□□□ -0.22
VIM-209ENST00000544301 OR10J6PQ8NGY7 276 aa13.68□□□□□ -0.22
VIM-209ENST00000544301 GATA1P15976 413 aaPredicted RBP13.67□□□□□ -0.22
VIM-209ENST00000544301 SLC25A16P16260 332 aa13.67□□□□□ -0.22
VIM-209ENST00000544301 EVI2AP22794 236 aa13.67□□□□□ -0.22
VIM-209ENST00000544301 SNAI2O43623 268 aa13.67□□□□□ -0.22
VIM-209ENST00000544301 DEFB1P60022 68 aa13.67□□□□□ -0.22
VIM-209ENST00000544301 RPL11P62913 178 aaKnown RBP13.67□□□□□ -0.22
VIM-209ENST00000544301 GAGE1Q13065 139 aa13.67□□□□□ -0.22
VIM-209ENST00000544301 LGALS9BQ3B8N2 356 aa13.67□□□□□ -0.22
VIM-209ENST00000544301 TM4SF20Q53R12 229 aa13.67□□□□□ -0.22
VIM-209ENST00000544301 LGALS9CQ6DKI2 356 aa13.67□□□□□ -0.22
VIM-209ENST00000544301 ZFAND2AQ8N6M9 145 aa13.67□□□□□ -0.22
VIM-209ENST00000544301 RHPN1-AS1Q9BWJ2 59 aa13.67□□□□□ -0.22
VIM-209ENST00000544301 GOLT1BQ9Y3E0 138 aa13.67□□□□□ -0.22
VIM-209ENST00000544301 IGHV4-4A0A075B6R2 117 aa13.66□□□□□ -0.22
VIM-209ENST00000544301 LINC01356Q8N9X3 169 aa13.66□□□□□ -0.22
VIM-209ENST00000544301 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP13.66□□□□□ -0.221e-6■■■■■ 28.8
VIM-209ENST00000544301 DEFB112Q30KQ8 113 aa13.66□□□□□ -0.22
VIM-209ENST00000544301 TMEM95Q3KNT9 176 aa13.66□□□□□ -0.22
VIM-209ENST00000544301 IFI27L1Q96BM0 104 aa13.66□□□□□ -0.22
VIM-209ENST00000544301 NXT2Q9NPJ8 142 aaKnown RBP13.66□□□□□ -0.22
VIM-209ENST00000544301 A0A096LNT2 108 aa13.65□□□□□ -0.22
VIM-209ENST00000544301 J3KRW8 73 aa13.65□□□□□ -0.22
VIM-209ENST00000544301 IGHV4-59P01825 116 aa13.65□□□□□ -0.22
VIM-209ENST00000544301 CACNG7P62955 275 aa13.65□□□□□ -0.22
VIM-209ENST00000544301 SMIM15Q7Z3B0 74 aa13.65□□□□□ -0.22
VIM-209ENST00000544301 DAZ1Q9NQZ3 744 aaKnown RBP13.65□□□□□ -0.22
VIM-209ENST00000544301 ZNF580Q9UK33 172 aa13.65□□□□□ -0.22
VIM-209ENST00000544301 SPANXN1Q5VSR9 72 aa13.64□□□□□ -0.23
VIM-209ENST00000544301 PEF1Q9UBV8 284 aaKnown RBP13.64□□□□□ -0.23
VIM-209ENST00000544301 IGKV3-7A0A075B6H7 116 aa13.64□□□□□ -0.23
VIM-209ENST00000544301 H3BVH4 76 aa13.64□□□□□ -0.23
VIM-209ENST00000544301 PRB1P04280 392 aa13.64□□□□□ -0.23
VIM-209ENST00000544301 OR2K2Q8NGT1 345 aa13.64□□□□□ -0.23
VIM-209ENST00000544301 FAM19A4Q96LR4 140 aa13.64□□□□□ -0.23
VIM-209ENST00000544301 COX8AP10176 69 aa13.63□□□□□ -0.23
VIM-209ENST00000544301 SMPXQ9UHP9 88 aa13.63□□□□□ -0.23
VIM-209ENST00000544301 UFC1Q9Y3C8 167 aa13.63□□□□□ -0.23
VIM-209ENST00000544301 CSMD2Q7Z408 3487 aa13.63□□□□□ -0.23
VIM-209ENST00000544301 TRAV21A0A0B4J279 112 aa13.63□□□□□ -0.23
VIM-209ENST00000544301 F6UB75 175 aa13.63□□□□□ -0.23
VIM-209ENST00000544301 NPSP0C0P6 89 aa13.63□□□□□ -0.23
VIM-209ENST00000544301 FCER1GP30273 86 aa13.63□□□□□ -0.23
VIM-209ENST00000544301 LEPP41159 167 aa13.63□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 64.4 ms