RNA–Protein interactions for RNA: ENST00000543744.1

PTPN6-222, Transcript of protein tyrosine phosphatase, non-receptor type 6, human

TSL 1 (best)

Gene PTPN6, Length 2,043 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN6-222	ENST00000543744	LINC01545	Q5VT33	79 aa		13.59	□□□□□ -0.23
PTPN6-222	ENST00000543744	PPP1R14D	Q9NXH3	145 aa		13.59	□□□□□ -0.23
PTPN6-222	ENST00000543744	C11orf21	Q9P2W6	132 aa		13.59	□□□□□ -0.23
PTPN6-222	ENST00000543744		A0A096LNJ9	63 aa		13.58	□□□□□ -0.24
PTPN6-222	ENST00000543744	AVP	P01185	164 aa		13.58	□□□□□ -0.24
PTPN6-222	ENST00000543744	PPBP	P02775	128 aa		13.58	□□□□□ -0.24
PTPN6-222	ENST00000543744		Q6ZS46	218 aa		13.58	□□□□□ -0.24
PTPN6-222	ENST00000543744	ZNF738	Q8NE65	137 aa		13.58	□□□□□ -0.24
PTPN6-222	ENST00000543744	OR4X2	Q8NGF9	303 aa		13.58	□□□□□ -0.24
PTPN6-222	ENST00000543744	NRGN	Q92686	78 aa		13.58	□□□□□ -0.24
PTPN6-222	ENST00000543744	RNF185	Q96GF1	192 aa		13.58	□□□□□ -0.24
PTPN6-222	ENST00000543744	ZNF25	P17030	456 aa	Predicted RBP	13.57	□□□□□ -0.24
PTPN6-222	ENST00000543744	GATA3	P23771	443 aa		13.57	□□□□□ -0.24
PTPN6-222	ENST00000543744	G0S2	P27469	103 aa		13.57	□□□□□ -0.24
PTPN6-222	ENST00000543744	PRSS57	Q6UWY2	283 aa		13.57	□□□□□ -0.24
PTPN6-222	ENST00000543744	C20orf173	Q96LM9	149 aa		13.57	□□□□□ -0.24
PTPN6-222	ENST00000543744	PMCHL2	Q9BQD1	86 aa		13.57	□□□□□ -0.24
PTPN6-222	ENST00000543744	NPFFR1	Q9GZQ6	430 aa		13.57	□□□□□ -0.24
PTPN6-222	ENST00000543744	CELSR1	Q9NYQ6	3014 aa		13.56	□□□□□ -0.24
PTPN6-222	ENST00000543744		A0A0G2JLM5	398 aa		13.56	□□□□□ -0.24
PTPN6-222	ENST00000543744	TCF21	O43680	179 aa		13.56	□□□□□ -0.24
PTPN6-222	ENST00000543744	IGLV1-40	P01703	118 aa		13.56	□□□□□ -0.24
PTPN6-222	ENST00000543744	FOXE3	Q13461	319 aa		13.56	□□□□□ -0.24
PTPN6-222	ENST00000543744	GPHB5	Q86YW7	130 aa		13.56	□□□□□ -0.24
PTPN6-222	ENST00000543744	STPG4	Q8N801	248 aa		13.56	□□□□□ -0.24
PTPN6-222	ENST00000543744	OR8A1	Q8NGG7	326 aa		13.56	□□□□□ -0.24
PTPN6-222	ENST00000543744	LENEP	Q9Y5L5	61 aa		13.56	□□□□□ -0.24
PTPN6-222	ENST00000543744	MAP1A	P78559	2803 aa	Predicted RBP	13.55	□□□□□ -0.24
PTPN6-222	ENST00000543744	HBD	P02042	147 aa		13.55	□□□□□ -0.24
PTPN6-222	ENST00000543744	TFPI2	P48307	235 aa		13.55	□□□□□ -0.24
PTPN6-222	ENST00000543744	LCNL1	Q6ZST4	164 aa		13.55	□□□□□ -0.24
PTPN6-222	ENST00000543744	MAP1LC3A	Q9H492	121 aa		13.55	□□□□□ -0.24
PTPN6-222	ENST00000543744	ACACB	O00763	2458 aa		13.55	□□□□□ -0.24
PTPN6-222	ENST00000543744	SLC25A16	P16260	332 aa		13.54	□□□□□ -0.24
PTPN6-222	ENST00000543744	HINT1	P49773	126 aa	Predicted RBP	13.54	□□□□□ -0.24
PTPN6-222	ENST00000543744	OR10J6P	Q8NGY7	276 aa		13.54	□□□□□ -0.24
PTPN6-222	ENST00000543744	LINC00477	Q96M19	166 aa		13.54	□□□□□ -0.24
PTPN6-222	ENST00000543744	MS4A6A	Q9H2W1	248 aa		13.54	□□□□□ -0.24
PTPN6-222	ENST00000543744	MYO18B	Q8IUG5	2567 aa		13.54	□□□□□ -0.24
PTPN6-222	ENST00000543744	SOCS3	O14543	225 aa		13.54	□□□□□ -0.24
PTPN6-222	ENST00000543744	OVOL1	O14753	267 aa		13.54	□□□□□ -0.24
PTPN6-222	ENST00000543744	RPL11	P62913	178 aa	Known RBP	13.54	□□□□□ -0.24
PTPN6-222	ENST00000543744	FXYD7	P58549	80 aa		13.53	□□□□□ -0.24
PTPN6-222	ENST00000543744	SLC25A34	Q6PIV7	304 aa		13.53	□□□□□ -0.24
PTPN6-222	ENST00000543744	TMEM208	Q9BTX3	173 aa		13.53	□□□□□ -0.24
PTPN6-222	ENST00000543744	IGHV7-4-1	A0A0J9YVY3	117 aa		13.52	□□□□□ -0.24
PTPN6-222	ENST00000543744	TNFRSF6B	O95407	300 aa		13.52	□□□□□ -0.24
PTPN6-222	ENST00000543744	CFHR3	Q02985	330 aa		13.52	□□□□□ -0.24
PTPN6-222	ENST00000543744		Q6ZQT7	251 aa		13.52	□□□□□ -0.24
PTPN6-222	ENST00000543744	SMIM15	Q7Z3B0	74 aa		13.52	□□□□□ -0.24
PTPN6-222	ENST00000543744	LINC01356	Q8N9X3	169 aa		13.52	□□□□□ -0.24
PTPN6-222	ENST00000543744	GAS8-AS1	O95177	125 aa		13.52	□□□□□ -0.25
PTPN6-222	ENST00000543744	PRR9	Q5T870	116 aa		13.52	□□□□□ -0.25
PTPN6-222	ENST00000543744	RHPN1-AS1	Q9BWJ2	59 aa		13.52	□□□□□ -0.25
PTPN6-222	ENST00000543744	SCRT2	Q9NQ03	307 aa		13.52	□□□□□ -0.25
PTPN6-222	ENST00000543744	EVI2A	P22794	236 aa		13.51	□□□□□ -0.25
PTPN6-222	ENST00000543744	TM4SF20	Q53R12	229 aa		13.51	□□□□□ -0.25
PTPN6-222	ENST00000543744	TP73-AS1	Q9UF72	201 aa		13.51	□□□□□ -0.25
PTPN6-222	ENST00000543744	UTP20	O75691	2785 aa	Known RBP	13.51	□□□□□ -0.25
PTPN6-222	ENST00000543744	DAZ1	Q9NQZ3	744 aa	Known RBP	13.51	□□□□□ -0.25
PTPN6-222	ENST00000543744	GOLT1B	Q9Y3E0	138 aa		13.51	□□□□□ -0.25
PTPN6-222	ENST00000543744	CELSR2	Q9HCU4	2923 aa		13.5	□□□□□ -0.25
PTPN6-222	ENST00000543744		J3KRW8	73 aa		13.5	□□□□□ -0.25
PTPN6-222	ENST00000543744	CACNG7	P62955	275 aa		13.5	□□□□□ -0.25
PTPN6-222	ENST00000543744	DEFB112	Q30KQ8	113 aa		13.5	□□□□□ -0.25
PTPN6-222	ENST00000543744	SPANXN1	Q5VSR9	72 aa		13.5	□□□□□ -0.25
PTPN6-222	ENST00000543744	NXT2	Q9NPJ8	142 aa	Known RBP	13.5	□□□□□ -0.25
PTPN6-222	ENST00000543744	PEF1	Q9UBV8	284 aa	Known RBP	13.5	□□□□□ -0.25
PTPN6-222	ENST00000543744	ZNF580	Q9UK33	172 aa		13.5	□□□□□ -0.25
PTPN6-222	ENST00000543744	IGHV4-4	A0A075B6R2	117 aa		13.49	□□□□□ -0.25
PTPN6-222	ENST00000543744	LINC01546	A6NGU7	62 aa		13.49	□□□□□ -0.25
PTPN6-222	ENST00000543744	DLEU1	O43261	78 aa		13.49	□□□□□ -0.25
PTPN6-222	ENST00000543744	SNAI2	O43623	268 aa		13.49	□□□□□ -0.25
PTPN6-222	ENST00000543744	IGHV4-59	P01825	116 aa		13.49	□□□□□ -0.25
PTPN6-222	ENST00000543744	LGALS9B	Q3B8N2	356 aa		13.49	□□□□□ -0.25
PTPN6-222	ENST00000543744	LGALS9C	Q6DKI2	356 aa		13.49	□□□□□ -0.25
PTPN6-222	ENST00000543744	ZFAND2A	Q8N6M9	145 aa		13.49	□□□□□ -0.25
PTPN6-222	ENST00000543744	IFI27L1	Q96BM0	104 aa		13.49	□□□□□ -0.25
PTPN6-222	ENST00000543744	IGKV3-7	A0A075B6H7	116 aa		13.49	□□□□□ -0.25
PTPN6-222	ENST00000543744	PRB1	P04280	392 aa		13.49	□□□□□ -0.25
PTPN6-222	ENST00000543744	GATA1	P15976	413 aa	Predicted RBP	13.49	□□□□□ -0.25
PTPN6-222	ENST00000543744	TMEM95	Q3KNT9	176 aa		13.49	□□□□□ -0.25
PTPN6-222	ENST00000543744	UFC1	Q9Y3C8	167 aa		13.49	□□□□□ -0.25
PTPN6-222	ENST00000543744	TRAV21	A0A0B4J279	112 aa		13.48	□□□□□ -0.25
PTPN6-222	ENST00000543744		H3BVH4	76 aa		13.48	□□□□□ -0.25
PTPN6-222	ENST00000543744	COX6B1	P14854	86 aa		13.48	□□□□□ -0.25
PTPN6-222	ENST00000543744	DEFB1	P60022	68 aa		13.48	□□□□□ -0.25
PTPN6-222	ENST00000543744	GAGE1	Q13065	139 aa		13.48	□□□□□ -0.25
PTPN6-222	ENST00000543744	SMPX	Q9UHP9	88 aa		13.48	□□□□□ -0.25
PTPN6-222	ENST00000543744	PRPF8	Q6P2Q9	2335 aa	Known RBP eCLIP	13.48	□□□□□ -0.25
PTPN6-222	ENST00000543744		J3QLI3	93 aa		13.47	□□□□□ -0.25
PTPN6-222	ENST00000543744	LEP	P41159	167 aa		13.47	□□□□□ -0.25
PTPN6-222	ENST00000543744	OR2K2	Q8NGT1	345 aa		13.47	□□□□□ -0.25
PTPN6-222	ENST00000543744		A0A096LNT2	108 aa		13.47	□□□□□ -0.25
PTPN6-222	ENST00000543744		K7EMT4	169 aa		13.47	□□□□□ -0.25
PTPN6-222	ENST00000543744	TGFA	P01135	160 aa		13.47	□□□□□ -0.25
PTPN6-222	ENST00000543744	PSMB8	P28062	276 aa		13.47	□□□□□ -0.25
PTPN6-222	ENST00000543744	FCER1G	P30273	86 aa		13.47	□□□□□ -0.25
PTPN6-222	ENST00000543744		Q8N8P6	123 aa		13.46	□□□□□ -0.25
PTPN6-222	ENST00000543744	CRYBG3	Q68DQ2	2970 aa		13.46	□□□□□ -0.26

Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms