RNA–Protein interactions for RNA: ENST00000542420.6

SS18-205, Transcript of SS18, nBAF chromatin remodeling complex subunit, humanhuman

TSL 2 BASIC

Gene SS18, Length 2,321 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SS18-205ENST00000542420 ST20Q9HBF5 79 aa7.56□□□□□ -1.2
SS18-205ENST00000542420 ZNF80P51504 273 aaPredicted RBP7.55□□□□□ -1.2
SS18-205ENST00000542420 CACNA1BQ00975 2339 aa7.55□□□□□ -1.2
SS18-205ENST00000542420 Q71RC1 249 aaPredicted RBP7.55□□□□□ -1.2
SS18-205ENST00000542420 DPF1Q92782 380 aa7.55□□□□□ -1.2
SS18-205ENST00000542420 AGPAT4-IT1Q9H0P7 198 aa7.55□□□□□ -1.2
SS18-205ENST00000542420 BEX4Q9NWD9 120 aaPredicted RBP7.55□□□□□ -1.2
SS18-205ENST00000542420 SOCS3O14543 225 aa7.55□□□□□ -1.2
SS18-205ENST00000542420 COX6B1P14854 86 aa7.55□□□□□ -1.2
SS18-205ENST00000542420 APRG1Q8IVJ8 170 aa7.55□□□□□ -1.2
SS18-205ENST00000542420 PRELID3AQ96N28 172 aa7.55□□□□□ -1.2
SS18-205ENST00000542420 MS4A6AQ9H2W1 248 aa7.55□□□□□ -1.2
SS18-205ENST00000542420 MUC21A0A0G2JKD1 596 aa7.54□□□□□ -1.2
SS18-205ENST00000542420 MUC21A0A140T8X8 626 aa7.54□□□□□ -1.2
SS18-205ENST00000542420 SNAI2O43623 268 aa7.54□□□□□ -1.2
SS18-205ENST00000542420 MUC21Q5SSG8 566 aa7.54□□□□□ -1.2
SS18-205ENST00000542420 NEGR1Q7Z3B1 354 aa7.54□□□□□ -1.2
SS18-205ENST00000542420 C16orf92Q96LL3 132 aa7.54□□□□□ -1.2
SS18-205ENST00000542420 FSHBP01225 129 aa7.53□□□□□ -1.2
SS18-205ENST00000542420 HLA-DMBP28068 263 aa7.53□□□□□ -1.2
SS18-205ENST00000542420 MRPL51Q4U2R6 128 aaKnown RBP7.53□□□□□ -1.2
SS18-205ENST00000542420 LINC01545Q5VT33 79 aa7.53□□□□□ -1.2
SS18-205ENST00000542420 ZNF575Q86XF7 245 aa7.53□□□□□ -1.2
SS18-205ENST00000542420 GPHB5Q86YW7 130 aa7.53□□□□□ -1.2
SS18-205ENST00000542420 OR1N2Q8NGR9 330 aa7.53□□□□□ -1.2
SS18-205ENST00000542420 PRSS3P2Q8NHM4 247 aa7.53□□□□□ -1.2
SS18-205ENST00000542420 Q8TAT8 98 aa7.53□□□□□ -1.2
SS18-205ENST00000542420 DOPEY1Q5JWR5 2465 aa7.53□□□□□ -1.2
SS18-205ENST00000542420 PKD1L2Q7Z442 2459 aa7.53□□□□□ -1.2
SS18-205ENST00000542420 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP7.53□□□□□ -1.21e-7■■■■□ 26.1
SS18-205ENST00000542420 IGHV7-4-1A0A0J9YVY3 117 aa7.53□□□□□ -1.2
SS18-205ENST00000542420 PRAC2D3DTV9 90 aa7.53□□□□□ -1.2
SS18-205ENST00000542420 ORM1P02763 201 aa7.53□□□□□ -1.2
SS18-205ENST00000542420 SCGB1A1P11684 91 aa7.53□□□□□ -1.2
SS18-205ENST00000542420 FAM19A4Q96LR4 140 aa7.53□□□□□ -1.2
SS18-205ENST00000542420 SMG1Q96Q15 3661 aaKnown RBP7.53□□□□□ -1.2
SS18-205ENST00000542420 NCOR2Q9Y618 2525 aa7.53□□□□□ -1.2
SS18-205ENST00000542420 IGHV3OR16-10A0A075B7F0 116 aa7.52□□□□□ -1.2
SS18-205ENST00000542420 D6R8Y8 96 aa7.52□□□□□ -1.2
SS18-205ENST00000542420 CD5LO43866 347 aa7.52□□□□□ -1.2
SS18-205ENST00000542420 NUDT3O95989 172 aa7.52□□□□□ -1.2
SS18-205ENST00000542420 TWIST1Q15672 202 aa7.52□□□□□ -1.2
SS18-205ENST00000542420 TMEM95Q3KNT9 176 aa7.52□□□□□ -1.2
SS18-205ENST00000542420 IL17RELQ6ZVW7 336 aa7.52□□□□□ -1.2
SS18-205ENST00000542420 OR4X2Q8NGF9 303 aa7.52□□□□□ -1.2
SS18-205ENST00000542420 OR10J6PQ8NGY7 276 aa7.52□□□□□ -1.2
SS18-205ENST00000542420 NXT2Q9NPJ8 142 aaKnown RBP7.52□□□□□ -1.2
SS18-205ENST00000542420 DAZ1Q9NQZ3 744 aaKnown RBP7.52□□□□□ -1.2
SS18-205ENST00000542420 IGHV3-35A0A0C4DH35 117 aa7.52□□□□□ -1.21
SS18-205ENST00000542420 TMEM213A2RRL7 107 aa7.52□□□□□ -1.21
SS18-205ENST00000542420 OR4C46A6NHA9 309 aa7.52□□□□□ -1.21
SS18-205ENST00000542420 ERCC8Q13216 396 aa7.52□□□□□ -1.21
SS18-205ENST00000542420 FAM106AQ4KMX7 169 aa7.52□□□□□ -1.21
SS18-205ENST00000542420 PMCHL2Q9BQD1 86 aa7.52□□□□□ -1.21
SS18-205ENST00000542420 ZNF747Q9BV97 191 aa7.52□□□□□ -1.21
SS18-205ENST00000542420 SIGLEC8Q9NYZ4 499 aa7.52□□□□□ -1.21
SS18-205ENST00000542420 PEF1Q9UBV8 284 aaKnown RBP7.52□□□□□ -1.21
SS18-205ENST00000542420 UFC1Q9Y3C8 167 aa7.52□□□□□ -1.21
SS18-205ENST00000542420 PIEZO1Q92508 2521 aa7.52□□□□□ -1.21
SS18-205ENST00000542420 TRAV21A0A0B4J279 112 aa7.51□□□□□ -1.21
SS18-205ENST00000542420 HBDP02042 147 aa7.51□□□□□ -1.21
SS18-205ENST00000542420 PF4V1P10720 104 aa7.51□□□□□ -1.21
SS18-205ENST00000542420 PSMB8P28062 276 aa7.51□□□□□ -1.21
SS18-205ENST00000542420 CKS2P33552 79 aa7.51□□□□□ -1.21
SS18-205ENST00000542420 LY6EQ16553 131 aa7.51□□□□□ -1.21
SS18-205ENST00000542420 AMN1Q8IY45 258 aa7.51□□□□□ -1.21
SS18-205ENST00000542420 RNF182Q8N6D2 247 aa7.51□□□□□ -1.21
SS18-205ENST00000542420 TEX29Q8N6K0 151 aa7.51□□□□□ -1.21
SS18-205ENST00000542420 RNF185Q96GF1 192 aa7.51□□□□□ -1.21
SS18-205ENST00000542420 ODF3Q96PU9 254 aa7.51□□□□□ -1.21
SS18-205ENST00000542420 TPPP3Q9BW30 176 aa7.51□□□□□ -1.21
SS18-205ENST00000542420 MAP1LC3AQ9H492 121 aa7.51□□□□□ -1.21
SS18-205ENST00000542420 IGKV3D-20A0A0C4DH25 116 aa7.51□□□□□ -1.21
SS18-205ENST00000542420 LGALS9BQ3B8N2 356 aa7.51□□□□□ -1.21
SS18-205ENST00000542420 LGALS9CQ6DKI2 356 aa7.51□□□□□ -1.21
SS18-205ENST00000542420 TMSB15BA0A087X1C1 80 aa7.5□□□□□ -1.21
SS18-205ENST00000542420 ID1P41134 155 aa7.5□□□□□ -1.21
SS18-205ENST00000542420 IGFL4Q6B9Z1 124 aa7.5□□□□□ -1.21
SS18-205ENST00000542420 PRRC2AP48634 2157 aaKnown RBP7.5□□□□□ -1.21
SS18-205ENST00000542420 CHD8Q9HCK8 2581 aa7.5□□□□□ -1.21
SS18-205ENST00000542420 K7EMI3 77 aa7.5□□□□□ -1.21
SS18-205ENST00000542420 SMAD7O15105 426 aaKnown RBP7.5□□□□□ -1.21
SS18-205ENST00000542420 ELANEP08246 267 aa7.5□□□□□ -1.21
SS18-205ENST00000542420 OXLD1Q5BKU9 147 aa7.5□□□□□ -1.21
SS18-205ENST00000542420 UNQ9165/PRO28630Q6UXU0 137 aa7.5□□□□□ -1.21
SS18-205ENST00000542420 RNF152Q8N8N0 203 aa7.5□□□□□ -1.21
SS18-205ENST00000542420 MYOZ3Q8TDC0 251 aa7.5□□□□□ -1.21
SS18-205ENST00000542420 JMJD8Q96S16 334 aa7.5□□□□□ -1.21
SS18-205ENST00000542420 IGHV3OR16-8A0A075B7F1 116 aa7.49□□□□□ -1.21
SS18-205ENST00000542420 A0A1B0GV72 72 aa7.49□□□□□ -1.21
SS18-205ENST00000542420 LGALS9O00182 355 aa7.49□□□□□ -1.21
SS18-205ENST00000542420 AVPP01185 164 aa7.49□□□□□ -1.21
SS18-205ENST00000542420 IFI27P40305 119 aaPredicted RBP7.49□□□□□ -1.21
SS18-205ENST00000542420 BLCAPP62952 87 aa7.49□□□□□ -1.21
SS18-205ENST00000542420 MRAP2Q96G30 205 aa7.49□□□□□ -1.21
SS18-205ENST00000542420 ZZEF1O43149 2961 aa7.49□□□□□ -1.21
SS18-205ENST00000542420 IGHV3-66A0A0C4DH42 116 aa7.49□□□□□ -1.21
SS18-205ENST00000542420 AZU1P20160 251 aa7.49□□□□□ -1.21
SS18-205ENST00000542420 C12orf54Q6X4T0 127 aa7.49□□□□□ -1.21
SS18-205ENST00000542420 ZFAND2AQ8N6M9 145 aa7.49□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 299 ms