RNA–Protein interactions for RNA: ENST00000541410.1

CLIP1-216, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 1 (best)

Gene CLIP1, Length 2,379 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-216ENST00000541410 RBAKDNA6NC62 111 aa10.99□□□□□ -0.65
CLIP1-216ENST00000541410 FABP5P3A8MUU1 101 aa10.99□□□□□ -0.65
CLIP1-216ENST00000541410 BMI1P35226 326 aa10.99□□□□□ -0.65
CLIP1-216ENST00000541410 AMTP48728 403 aa10.99□□□□□ -0.65
CLIP1-216ENST00000541410 PRR9Q5T870 116 aa10.99□□□□□ -0.65
CLIP1-216ENST00000541410 PRO1933Q9H354 126 aa10.99□□□□□ -0.65
CLIP1-216ENST00000541410 YAE1D1Q9NRH1 226 aa10.99□□□□□ -0.65
CLIP1-216ENST00000541410 SCGB1D1O95968 90 aa10.99□□□□□ -0.65
CLIP1-216ENST00000541410 HIST1H1AQ02539 215 aaPredicted RBP10.99□□□□□ -0.65
CLIP1-216ENST00000541410 RNASEKQ6P5S7 137 aaKnown RBP10.99□□□□□ -0.65
CLIP1-216ENST00000541410 COX8CQ7Z4L0 72 aa10.99□□□□□ -0.65
CLIP1-216ENST00000541410 KLHDC1Q8N7A1 406 aa10.99□□□□□ -0.65
CLIP1-216ENST00000541410 MSRB1Q9NZV6 116 aa10.99□□□□□ -0.65
CLIP1-216ENST00000541410 KRTAP1-1Q07627 177 aa10.98□□□□□ -0.65
CLIP1-216ENST00000541410 RIGQ13278 110 aa10.98□□□□□ -0.65
CLIP1-216ENST00000541410 KIR3DS1Q14943 382 aa10.98□□□□□ -0.65
CLIP1-216ENST00000541410 PMCHL1Q16048 86 aa10.98□□□□□ -0.65
CLIP1-216ENST00000541410 C11orf44Q8N8P7 122 aa10.98□□□□□ -0.65
CLIP1-216ENST00000541410 KCNS1Q96KK3 526 aa10.98□□□□□ -0.65
CLIP1-216ENST00000541410 LOC102724200A0A096LPH7 203 aaPredicted RBP10.98□□□□□ -0.65
CLIP1-216ENST00000541410 FBLL1A6NHQ2 334 aaKnown RBP10.98□□□□□ -0.65
CLIP1-216ENST00000541410 LINC00587B1AMM8 73 aa10.98□□□□□ -0.65
CLIP1-216ENST00000541410 LGALS1P09382 135 aaKnown RBP10.98□□□□□ -0.65
CLIP1-216ENST00000541410 HOXD3P31249 432 aaPredicted RBP10.98□□□□□ -0.65
CLIP1-216ENST00000541410 C9orf47Q6ZRZ4 202 aa10.98□□□□□ -0.65
CLIP1-216ENST00000541410 FER1L6-AS1Q8NA97 138 aa10.98□□□□□ -0.65
CLIP1-216ENST00000541410 SMR3AQ99954 134 aa10.98□□□□□ -0.65
CLIP1-216ENST00000541410 ESM1Q9NQ30 184 aa10.98□□□□□ -0.65
CLIP1-216ENST00000541410 IGKV3D-20A0A0C4DH25 116 aa10.97□□□□□ -0.65
CLIP1-216ENST00000541410 DNAJC9-AS1A6NH13 148 aa10.97□□□□□ -0.65
CLIP1-216ENST00000541410 GPX1P07203 203 aa10.97□□□□□ -0.65
CLIP1-216ENST00000541410 CSN3P07498 182 aa10.97□□□□□ -0.65
CLIP1-216ENST00000541410 ELANEP08246 267 aa10.97□□□□□ -0.65
CLIP1-216ENST00000541410 ESDP10768 282 aa10.97□□□□□ -0.65
CLIP1-216ENST00000541410 BORCS7Q96B45 105 aa10.97□□□□□ -0.65
CLIP1-216ENST00000541410 CLEC5AQ9NY25 188 aa10.97□□□□□ -0.65
CLIP1-216ENST00000541410 SLURP1P55000 103 aa10.97□□□□□ -0.65
CLIP1-216ENST00000541410 TWIST1Q15672 202 aa10.97□□□□□ -0.65
CLIP1-216ENST00000541410 MRPL53Q96EL3 112 aaKnown RBP10.97□□□□□ -0.65
CLIP1-216ENST00000541410 NAGKQ9UJ70 344 aa10.97□□□□□ -0.65
CLIP1-216ENST00000541410 SPRY2O43597 315 aa10.96□□□□□ -0.65
CLIP1-216ENST00000541410 TCTEX1D4Q5JR98 221 aa10.96□□□□□ -0.65
CLIP1-216ENST00000541410 AMN1Q8IY45 258 aa10.96□□□□□ -0.65
CLIP1-216ENST00000541410 URB1-AS1Q96HZ7 61 aa10.96□□□□□ -0.65
CLIP1-216ENST00000541410 UFC1Q9Y3C8 167 aa10.96□□□□□ -0.65
CLIP1-216ENST00000541410 ZNF324O75467 553 aaPredicted RBP10.96□□□□□ -0.66
CLIP1-216ENST00000541410 PAFAH1B2P68402 229 aa10.96□□□□□ -0.66
CLIP1-216ENST00000541410 NIT1Q86X76 327 aa10.96□□□□□ -0.66
CLIP1-216ENST00000541410 OR10J6PQ8NGY7 276 aa10.96□□□□□ -0.66
CLIP1-216ENST00000541410 UBE2E2Q96LR5 201 aa10.96□□□□□ -0.66
CLIP1-216ENST00000541410 TMEM89A2RUT3 159 aa10.95□□□□□ -0.66
CLIP1-216ENST00000541410 K7EMT4 169 aa10.95□□□□□ -0.66
CLIP1-216ENST00000541410 ZNF688P0C7X2 276 aa10.95□□□□□ -0.66
CLIP1-216ENST00000541410 KRTDAPP60985 99 aa10.95□□□□□ -0.66
CLIP1-216ENST00000541410 Q6ZSV7 163 aa10.95□□□□□ -0.66
CLIP1-216ENST00000541410 MYOZ3Q8TDC0 251 aa10.95□□□□□ -0.66
CLIP1-216ENST00000541410 TIMM8BQ9Y5J9 83 aaPredicted RBP10.95□□□□□ -0.66
CLIP1-216ENST00000541410 HSBP1O75506 76 aa10.95□□□□□ -0.66
CLIP1-216ENST00000541410 KLF5Q13887 457 aaPredicted RBP10.95□□□□□ -0.66
CLIP1-216ENST00000541410 Q6AWC8 147 aa10.95□□□□□ -0.66
CLIP1-216ENST00000541410 DCANP1Q8TF63 244 aa10.95□□□□□ -0.66
CLIP1-216ENST00000541410 MS4A6AQ9H2W1 248 aa10.95□□□□□ -0.66
CLIP1-216ENST00000541410 IGLC6P0CF74 106 aa10.94□□□□□ -0.66
CLIP1-216ENST00000541410 OR8A1Q8NGG7 326 aa10.94□□□□□ -0.66
CLIP1-216ENST00000541410 IGKV3-20P01619 116 aa10.94□□□□□ -0.66
CLIP1-216ENST00000541410 LINC01559Q495D7 138 aa10.94□□□□□ -0.66
CLIP1-216ENST00000541410 Q8N2B8 174 aa10.94□□□□□ -0.66
CLIP1-216ENST00000541410 SMKR1H3BMG3 65 aa10.93□□□□□ -0.66
CLIP1-216ENST00000541410 RNASE4P34096 147 aaKnown RBP10.93□□□□□ -0.66
CLIP1-216ENST00000541410 ZFAND2AQ8N6M9 145 aa10.93□□□□□ -0.66
CLIP1-216ENST00000541410 OR11H1Q8NG94 326 aa10.93□□□□□ -0.66
CLIP1-216ENST00000541410 FOXC2Q99958 501 aa10.93□□□□□ -0.66
CLIP1-216ENST00000541410 A0A1W2PRX2 142 aa10.92□□□□□ -0.66
CLIP1-216ENST00000541410 D6R8Y8 96 aa10.92□□□□□ -0.66
CLIP1-216ENST00000541410 OVOL1O14753 267 aa10.92□□□□□ -0.66
CLIP1-216ENST00000541410 CTRLP40313 264 aa10.92□□□□□ -0.66
CLIP1-216ENST00000541410 RPS20P60866 119 aaKnown RBP10.92□□□□□ -0.66
CLIP1-216ENST00000541410 TDRG1Q3Y452 100 aa10.92□□□□□ -0.66
CLIP1-216ENST00000541410 PSMG4Q5JS54 123 aa10.92□□□□□ -0.66
CLIP1-216ENST00000541410 ZNF664Q8N3J9 261 aa10.92□□□□□ -0.66
CLIP1-216ENST00000541410 M0R2Z0 102 aa10.92□□□□□ -0.66
CLIP1-216ENST00000541410 OR10AG1Q8NH19 301 aa10.92□□□□□ -0.66
CLIP1-216ENST00000541410 LOC389332A0A1B0GUA5 103 aa10.91□□□□□ -0.66
CLIP1-216ENST00000541410 C2orf70A6NJV1 201 aa10.91□□□□□ -0.66
CLIP1-216ENST00000541410 NCR2O95944 276 aa10.91□□□□□ -0.66
CLIP1-216ENST00000541410 S100A12P80511 92 aa10.91□□□□□ -0.66
CLIP1-216ENST00000541410 ADAMTSL5Q6ZMM2 481 aa10.91□□□□□ -0.66
CLIP1-216ENST00000541410 KLHL30-AS1Q8NEE0 82 aa10.91□□□□□ -0.66
CLIP1-216ENST00000541410 LINC00477Q96M19 166 aa10.91□□□□□ -0.66
CLIP1-216ENST00000541410 HIVEP2P31629 2446 aa10.91□□□□□ -0.66
CLIP1-216ENST00000541410 CD5LO43866 347 aa10.91□□□□□ -0.66
CLIP1-216ENST00000541410 GAS8-AS1O95177 125 aa10.91□□□□□ -0.66
CLIP1-216ENST00000541410 RNF152Q8N8N0 203 aa10.91□□□□□ -0.66
CLIP1-216ENST00000541410 H3BVH4 76 aa10.9□□□□□ -0.66
CLIP1-216ENST00000541410 FAM104BQ5XKR9 115 aa10.9□□□□□ -0.66
CLIP1-216ENST00000541410 MRPL51Q4U2R6 128 aaKnown RBP10.9□□□□□ -0.66
CLIP1-216ENST00000541410 ZNF493Q6ZR52 646 aa10.9□□□□□ -0.66
CLIP1-216ENST00000541410 ANK3Q12955 4377 aaKnown RBP10.9□□□□□ -0.67
CLIP1-216ENST00000541410 A0A1B0GW15 77 aa10.89□□□□□ -0.67
CLIP1-216ENST00000541410 C3orf79P0CE67 100 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms