RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 CHCHD1Q96BP2 118 aaKnown RBP10.53□□□□□ -0.72
RTN3-210ENST00000540798 IGHV3OR16-13A0A075B7E8 117 aa10.53□□□□□ -0.72
RTN3-210ENST00000540798 IGHV3-74A0A0B4J1X5 117 aa10.53□□□□□ -0.72
RTN3-210ENST00000540798 LYZL1Q6UWQ5 148 aa10.53□□□□□ -0.72
RTN3-210ENST00000540798 CR1P17927 2039 aa10.53□□□□□ -0.72
RTN3-210ENST00000540798 C3orf79P0CE67 100 aa10.53□□□□□ -0.72
RTN3-210ENST00000540798 DEFB112Q30KQ8 113 aa10.53□□□□□ -0.72
RTN3-210ENST00000540798 SPG11Q96JI7 2443 aa10.52□□□□□ -0.72
RTN3-210ENST00000540798 IGHV3-49A0A0A0MS15 119 aa10.52□□□□□ -0.72
RTN3-210ENST00000540798 HNRNPA3P51991 378 aaKnown RBP10.52□□□□□ -0.72
RTN3-210ENST00000540798 C9orf47Q6ZRZ4 202 aa10.52□□□□□ -0.72
RTN3-210ENST00000540798 MRPL52Q86TS9 123 aaKnown RBP10.52□□□□□ -0.72
RTN3-210ENST00000540798 GPHB5Q86YW7 130 aa10.52□□□□□ -0.72
RTN3-210ENST00000540798 ATOH7Q8N100 152 aa10.52□□□□□ -0.72
RTN3-210ENST00000540798 SMAD7O15105 426 aaKnown RBP10.52□□□□□ -0.73
RTN3-210ENST00000540798 HSBP1O75506 76 aa10.52□□□□□ -0.73
RTN3-210ENST00000540798 KRTDAPP60985 99 aa10.52□□□□□ -0.73
RTN3-210ENST00000540798 LINC01559Q495D7 138 aa10.52□□□□□ -0.73
RTN3-210ENST00000540798 AGPAT4-IT1Q9H0P7 198 aa10.52□□□□□ -0.73
RTN3-210ENST00000540798 FAM181BA6NEQ2 426 aa10.51□□□□□ -0.73
RTN3-210ENST00000540798 SOCS3O14543 225 aa10.51□□□□□ -0.73
RTN3-210ENST00000540798 RNASEKQ6P5S7 137 aaKnown RBP10.51□□□□□ -0.73
RTN3-210ENST00000540798 C9orf139Q6ZV77 190 aa10.51□□□□□ -0.73
RTN3-210ENST00000540798 CNFNQ9BYD5 112 aa10.51□□□□□ -0.73
RTN3-210ENST00000540798 BEX4Q9NWD9 120 aaPredicted RBP10.51□□□□□ -0.73
RTN3-210ENST00000540798 U3KQK5 164 aa10.51□□□□□ -0.73
RTN3-210ENST00000540798 ANKRD17O75179 2603 aaKnown RBP10.51□□□□□ -0.73
RTN3-210ENST00000540798 A0A0G2JLM5 398 aa10.51□□□□□ -0.73
RTN3-210ENST00000540798 A1L4Q6 167 aa10.51□□□□□ -0.73
RTN3-210ENST00000540798 FABP5P3A8MUU1 101 aa10.51□□□□□ -0.73
RTN3-210ENST00000540798 IGHV4-59P01825 116 aa10.51□□□□□ -0.73
RTN3-210ENST00000540798 SPATA45Q537H7 98 aa10.51□□□□□ -0.73
RTN3-210ENST00000540798 LRRC75A-AS1Q8N1F1 130 aa10.51□□□□□ -0.73
RTN3-210ENST00000540798 OR4X2Q8NGF9 303 aa10.51□□□□□ -0.73
RTN3-210ENST00000540798 BORCS7Q96B45 105 aa10.51□□□□□ -0.73
RTN3-210ENST00000540798 PF4V1P10720 104 aa10.51□□□□□ -0.73
RTN3-210ENST00000540798 KRTAP10-9P60411 292 aa10.51□□□□□ -0.73
RTN3-210ENST00000540798 IL17RELQ6ZVW7 336 aa10.51□□□□□ -0.73
RTN3-210ENST00000540798 M0R2Z0 102 aa10.5□□□□□ -0.73
RTN3-210ENST00000540798 IGHV4-31P0DP07 118 aa10.5□□□□□ -0.73
RTN3-210ENST00000540798 NTF3P20783 257 aa10.5□□□□□ -0.73
RTN3-210ENST00000540798 TMSB15BA0A087X1C1 80 aa10.5□□□□□ -0.73
RTN3-210ENST00000540798 C2orf70A6NJV1 201 aa10.5□□□□□ -0.73
RTN3-210ENST00000540798 PSMB8P28062 276 aa10.5□□□□□ -0.73
RTN3-210ENST00000540798 ZNF138P52744 262 aa10.5□□□□□ -0.73
RTN3-210ENST00000540798 EBLN2Q6P2I7 272 aa10.5□□□□□ -0.73
RTN3-210ENST00000540798 TMEM89A2RUT3 159 aa10.49□□□□□ -0.73
RTN3-210ENST00000540798 FER1L6-AS1Q8NA97 138 aa10.49□□□□□ -0.73
RTN3-210ENST00000540798 IGHV1-24A0A0C4DH33 117 aa10.49□□□□□ -0.73
RTN3-210ENST00000540798 TGFAP01135 160 aa10.49□□□□□ -0.73
RTN3-210ENST00000540798 IGHV3-11P01762 117 aa10.49□□□□□ -0.73
RTN3-210ENST00000540798 C20orf173Q96LM9 149 aa10.49□□□□□ -0.73
RTN3-210ENST00000540798 NPFFR1Q9GZQ6 430 aa10.49□□□□□ -0.73
RTN3-210ENST00000540798 TMEM213A2RRL7 107 aa10.49□□□□□ -0.73
RTN3-210ENST00000540798 HIST1H1AQ02539 215 aaPredicted RBP10.49□□□□□ -0.73
RTN3-210ENST00000540798 FAM104BQ5XKR9 115 aa10.49□□□□□ -0.73
RTN3-210ENST00000540798 TPPP3Q9BW30 176 aa10.49□□□□□ -0.73
RTN3-210ENST00000540798 MAP1AP78559 2803 aaPredicted RBP10.48□□□□□ -0.73
RTN3-210ENST00000540798 TENM4Q6N022 2769 aa10.48□□□□□ -0.73
RTN3-210ENST00000540798 A6NJY4 79 aa10.48□□□□□ -0.73
RTN3-210ENST00000540798 DEFB113Q30KQ7 82 aa10.48□□□□□ -0.73
RTN3-210ENST00000540798 LENEPQ9Y5L5 61 aa10.48□□□□□ -0.73
RTN3-210ENST00000540798 RNF223E7ERA6 249 aa10.48□□□□□ -0.73
RTN3-210ENST00000540798 TMEM78Q5T7P6 136 aa10.48□□□□□ -0.73
RTN3-210ENST00000540798 LCNL1Q6ZST4 164 aa10.48□□□□□ -0.73
RTN3-210ENST00000540798 C16orf92Q96LL3 132 aa10.48□□□□□ -0.73
RTN3-210ENST00000540798 PLA2G2AP14555 144 aa10.47□□□□□ -0.73
RTN3-210ENST00000540798 IGHV7-4-1A0A0J9YVY3 117 aa10.47□□□□□ -0.73
RTN3-210ENST00000540798 CRXO43186 299 aaPredicted RBP10.47□□□□□ -0.73
RTN3-210ENST00000540798 MAPK1IP1LQ8NDC0 245 aa10.47□□□□□ -0.73
RTN3-210ENST00000540798 C11orf21Q9P2W6 132 aa10.47□□□□□ -0.73
RTN3-210ENST00000540798 PRRC2AP48634 2157 aaKnown RBP10.47□□□□□ -0.73
RTN3-210ENST00000540798 IGKV3D-20A0A0C4DH25 116 aa10.47□□□□□ -0.73
RTN3-210ENST00000540798 K7EMT4 169 aa10.47□□□□□ -0.73
RTN3-210ENST00000540798 TMEM95Q3KNT9 176 aa10.47□□□□□ -0.73
RTN3-210ENST00000540798 PRSS57Q6UWY2 283 aa10.47□□□□□ -0.73
RTN3-210ENST00000540798 Q6YL49 198 aa10.47□□□□□ -0.73
RTN3-210ENST00000540798 FLNBO75369 2602 aaKnown RBP10.46□□□□□ -0.73
RTN3-210ENST00000540798 ORM1P02763 201 aa10.46□□□□□ -0.73
RTN3-210ENST00000540798 PEF1Q9UBV8 284 aaKnown RBP10.46□□□□□ -0.73
RTN3-210ENST00000540798 LRRK2Q5S007 2527 aa10.46□□□□□ -0.74
RTN3-210ENST00000540798 IGLC3P0DOY3 106 aa10.46□□□□□ -0.74
RTN3-210ENST00000540798 AMMECR1LQ6DCA0 310 aa10.46□□□□□ -0.74
RTN3-210ENST00000540798 VPREB3Q9UKI3 123 aa10.46□□□□□ -0.74
RTN3-210ENST00000540798 OR5AL1P0C617 328 aa10.45□□□□□ -0.74
RTN3-210ENST00000540798 KRTAP1-3Q8IUG1 177 aa10.45□□□□□ -0.74
RTN3-210ENST00000540798 OR1N2Q8NGR9 330 aa10.45□□□□□ -0.74
RTN3-210ENST00000540798 TMEM191AQ9H0A3 160 aa10.45□□□□□ -0.74
RTN3-210ENST00000540798 DAZ1Q9NQZ3 744 aaKnown RBP10.45□□□□□ -0.74
RTN3-210ENST00000540798 PMCHL1Q16048 86 aa10.45□□□□□ -0.74
RTN3-210ENST00000540798 MRPL51Q4U2R6 128 aaKnown RBP10.45□□□□□ -0.74
RTN3-210ENST00000540798 AMN1Q8IY45 258 aa10.45□□□□□ -0.74
RTN3-210ENST00000540798 FAM19A4Q96LR4 140 aa10.45□□□□□ -0.74
RTN3-210ENST00000540798 OVOL1O14753 267 aa10.44□□□□□ -0.74
RTN3-210ENST00000540798 SPATA12Q7Z6I5 190 aa10.44□□□□□ -0.74
RTN3-210ENST00000540798 MYOZ3Q8TDC0 251 aa10.44□□□□□ -0.74
RTN3-210ENST00000540798 UQCR10Q9UDW1 63 aa10.44□□□□□ -0.74
RTN3-210ENST00000540798 D6R8Y8 96 aa10.44□□□□□ -0.74
RTN3-210ENST00000540798 J3QKU1 62 aa10.44□□□□□ -0.74
RTN3-210ENST00000540798 K7ERU9 68 aa10.44□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 45 ms