RNA–Protein interactions for RNA: ENST00000540797.5

USP3-204, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2 BASIC

Gene USP3, Length 5,474 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-204ENST00000540797 PRR20DP86480 221 aa11.08□□□□□ -0.64
USP3-204ENST00000540797 PRR20BP86481 221 aa11.08□□□□□ -0.64
USP3-204ENST00000540797 PRR20AP86496 221 aa11.08□□□□□ -0.64
USP3-204ENST00000540797 Q8N7P7 452 aa11.08□□□□□ -0.64
USP3-204ENST00000540797 AJUBAQ96IF1 538 aa11.08□□□□□ -0.64
USP3-204ENST00000540797 F6UB75 175 aa11.08□□□□□ -0.64
USP3-204ENST00000540797 TMEM256Q8N2U0 113 aa11.08□□□□□ -0.64
USP3-204ENST00000540797 SPXQ9BT56 116 aa11.08□□□□□ -0.64
USP3-204ENST00000540797 HIST3H2BBQ8N257 126 aa11.08□□□□□ -0.64
USP3-204ENST00000540797 SPCS1Q9Y6A9 102 aa11.08□□□□□ -0.64
USP3-204ENST00000540797 I3L3M4 83 aa11.07□□□□□ -0.64
USP3-204ENST00000540797 C5orf30Q96GV9 206 aa11.07□□□□□ -0.64
USP3-204ENST00000540797 GP9P14770 177 aa11.07□□□□□ -0.64
USP3-204ENST00000540797 FAM104BQ5XKR9 115 aa11.07□□□□□ -0.64
USP3-204ENST00000540797 HLA-DMBP28068 263 aa11.06□□□□□ -0.64
USP3-204ENST00000540797 C17orf77Q96MU5 243 aa11.06□□□□□ -0.64
USP3-204ENST00000540797 SPAG8Q99932 426 aaPredicted RBP11.06□□□□□ -0.64
USP3-204ENST00000540797 TIMM21Q9BVV7 248 aa11.06□□□□□ -0.64
USP3-204ENST00000540797 H3BUT2 72 aa11.06□□□□□ -0.64
USP3-204ENST00000540797 M0R2P5 195 aa11.06□□□□□ -0.64
USP3-204ENST00000540797 SIRPDQ9H106 197 aa11.06□□□□□ -0.64
USP3-204ENST00000540797 TP53TG1Q9Y2A0 90 aa11.06□□□□□ -0.64
USP3-204ENST00000540797 IGLV11-55A0A075B6I3 123 aa11.05□□□□□ -0.64
USP3-204ENST00000540797 ANKHD1Q8IWZ3 2542 aaKnown RBP11.05□□□□□ -0.64
USP3-204ENST00000540797 IGHV3-38A0A0C4DH36 116 aa11.05□□□□□ -0.64
USP3-204ENST00000540797 MYMXA0A1B0GTQ4 84 aa11.05□□□□□ -0.64
USP3-204ENST00000540797 LOXL1Q08397 574 aaPredicted RBP11.05□□□□□ -0.64
USP3-204ENST00000540797 PRIMA1Q86XR5 153 aa11.05□□□□□ -0.64
USP3-204ENST00000540797 ZNF114Q8NC26 417 aa11.05□□□□□ -0.64
USP3-204ENST00000540797 ZC2HC1AQ96GY0 325 aa11.05□□□□□ -0.64
USP3-204ENST00000540797 TMEM243Q9BU79 118 aa11.05□□□□□ -0.64
USP3-204ENST00000540797 SDHAF1A6NFY7 115 aa11.05□□□□□ -0.64
USP3-204ENST00000540797 UBE2CO00762 179 aa11.05□□□□□ -0.64
USP3-204ENST00000540797 ZNF843Q8N446 348 aa11.05□□□□□ -0.64
USP3-204ENST00000540797 IGF2BP2-AS1Q96M15 143 aa11.05□□□□□ -0.64
USP3-204ENST00000540797 PIEZO1Q92508 2521 aa11.05□□□□□ -0.64
USP3-204ENST00000540797 I3L2K1 104 aa11.05□□□□□ -0.64
USP3-204ENST00000540797 ZNF561-AS1K7EIQ3 104 aa11.05□□□□□ -0.64
USP3-204ENST00000540797 IGLV1-47P01700 117 aa11.05□□□□□ -0.64
USP3-204ENST00000540797 GUSBP1Q15486 140 aa11.05□□□□□ -0.64
USP3-204ENST00000540797 APRG1Q8IVJ8 170 aa11.05□□□□□ -0.64
USP3-204ENST00000540797 OBSL1O75147 1896 aa11.05□□□□□ -0.64
USP3-204ENST00000540797 C9JQL5 133 aa11.05□□□□□ -0.64
USP3-204ENST00000540797 K7EIM0 57 aa11.04□□□□□ -0.64
USP3-204ENST00000540797 LRRC75A-AS1Q8N1F1 130 aa11.04□□□□□ -0.64
USP3-204ENST00000540797 ORAOV1Q8WV07 137 aa11.04□□□□□ -0.64
USP3-204ENST00000540797 GAGE6Q13070 117 aa11.04□□□□□ -0.64
USP3-204ENST00000540797 A0A096LPF7 62 aa11.04□□□□□ -0.64
USP3-204ENST00000540797 DYNAPQ8N1N2 210 aa11.04□□□□□ -0.64
USP3-204ENST00000540797 GSN-AS1Q9NRJ2 163 aa11.04□□□□□ -0.64
USP3-204ENST00000540797 HIVEP2P31629 2446 aa11.04□□□□□ -0.64
USP3-204ENST00000540797 FAM231DQ6ZW35 169 aa11.04□□□□□ -0.64
USP3-204ENST00000540797 BCL6BQ8N143 479 aaPredicted RBP11.04□□□□□ -0.64
USP3-204ENST00000540797 NOP10Q9NPE3 64 aaKnown RBP11.04□□□□□ -0.64
USP3-204ENST00000540797 ADCYAP1P18509 176 aa11.03□□□□□ -0.64
USP3-204ENST00000540797 VWC2Q2TAL6 325 aa11.03□□□□□ -0.64
USP3-204ENST00000540797 TRAV26-2A0A0B4J265 109 aa11.03□□□□□ -0.64
USP3-204ENST00000540797 SYS1-DBNDD2H3BUS1 97 aa11.03□□□□□ -0.64
USP3-204ENST00000540797 HSD52Q0P140 79 aa11.03□□□□□ -0.64
USP3-204ENST00000540797 C2orf66Q6UXQ4 117 aa11.03□□□□□ -0.64
USP3-204ENST00000540797 MRPL53Q96EL3 112 aaKnown RBP11.03□□□□□ -0.64
USP3-204ENST00000540797 AGPAT4-IT1Q9H0P7 198 aa11.03□□□□□ -0.64
USP3-204ENST00000540797 ERG28Q9UKR5 140 aa11.03□□□□□ -0.64
USP3-204ENST00000540797 IGHV4OR15-8A0A075B7B6 117 aa11.03□□□□□ -0.64
USP3-204ENST00000540797 A0A087WW49 117 aa11.03□□□□□ -0.64
USP3-204ENST00000540797 SLAQ13239 276 aa11.03□□□□□ -0.64
USP3-204ENST00000540797 ZC2HC1BQ5TFG8 222 aa11.03□□□□□ -0.64
USP3-204ENST00000540797 CLPSL1A2RUU4 121 aa11.03□□□□□ -0.64
USP3-204ENST00000540797 C3orf79P0CE67 100 aa11.03□□□□□ -0.64
USP3-204ENST00000540797 TRAV16A0A0A6YYK6 109 aaPredicted RBP11.02□□□□□ -0.64
USP3-204ENST00000540797 TSPAN13O95857 204 aa11.02□□□□□ -0.64
USP3-204ENST00000540797 Q8N8P6 123 aa11.02□□□□□ -0.64
USP3-204ENST00000540797 PYGO2Q9BRQ0 406 aa11.02□□□□□ -0.64
USP3-204ENST00000540797 CTSGP08311 255 aa11.02□□□□□ -0.65
USP3-204ENST00000540797 MRPL51Q4U2R6 128 aaKnown RBP11.02□□□□□ -0.65
USP3-204ENST00000540797 LYPD6Q86Y78 171 aa11.02□□□□□ -0.65
USP3-204ENST00000540797 GATD1Q8NB37 220 aa11.02□□□□□ -0.65
USP3-204ENST00000540797 PIFOQ8TCI5 191 aa11.02□□□□□ -0.65
USP3-204ENST00000540797 DOCK11Q5JSL3 2073 aa11.02□□□□□ -0.65
USP3-204ENST00000540797 hDV102S1A0JD36 115 aa11.02□□□□□ -0.65
USP3-204ENST00000540797 IL15RAQ13261 267 aa11.02□□□□□ -0.65
USP3-204ENST00000540797 PRSS57Q6UWY2 283 aa11.02□□□□□ -0.65
USP3-204ENST00000540797 RMI2Q96E14 147 aa11.01□□□□□ -0.65
USP3-204ENST00000540797 TMEM141Q96I45 108 aa11.01□□□□□ -0.65
USP3-204ENST00000540797 PTPN13Q12923 2485 aa11.01□□□□□ -0.65
USP3-204ENST00000540797 TMEM131Q92545 1883 aa11.01□□□□□ -0.65
USP3-204ENST00000540797 A0A1B0GV90 55 aa11.01□□□□□ -0.65
USP3-204ENST00000540797 LMO4P61968 165 aa11.01□□□□□ -0.65
USP3-204ENST00000540797 U3KQE9 123 aa11.01□□□□□ -0.65
USP3-204ENST00000540797 V9GYV3 84 aa11.01□□□□□ -0.65
USP3-204ENST00000540797 MYCNOSP40205 109 aa11□□□□□ -0.65
USP3-204ENST00000540797 C11orf52Q96A22 123 aa11□□□□□ -0.65
USP3-204ENST00000540797 A0A0J9YY99 117 aa11□□□□□ -0.65
USP3-204ENST00000540797 IGKV1-17P01599 117 aa11□□□□□ -0.65
USP3-204ENST00000540797 RBAKDNA6NC62 111 aa11□□□□□ -0.65
USP3-204ENST00000540797 EREGO14944 169 aa11□□□□□ -0.65
USP3-204ENST00000540797 LEPROTO15243 131 aa11□□□□□ -0.65
USP3-204ENST00000540797 GNRH2O43555 120 aa11□□□□□ -0.65
USP3-204ENST00000540797 IGLV2-23P01705 113 aa11□□□□□ -0.65
USP3-204ENST00000540797 IGHG2P01859 326 aa11□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms