RNA–Protein interactions for RNA: ENST00000540387.5

CTNNA1-243, Transcript of catenin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene CTNNA1, Length 2,684 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTNNA1-243ENST00000540387 UBTD1Q9HAC8 227 aa7.43□□□□□ -1.22
CTNNA1-243ENST00000540387 MRPL35Q9NZE8 188 aaKnown RBP7.43□□□□□ -1.22
CTNNA1-243ENST00000540387 NCBP2LA6PVI3 153 aaKnown RBP7.43□□□□□ -1.22
CTNNA1-243ENST00000540387 WNT9BO14905 357 aa7.43□□□□□ -1.22
CTNNA1-243ENST00000540387 SPINT2O43291 252 aa7.43□□□□□ -1.22
CTNNA1-243ENST00000540387 ATP5LO75964 103 aa7.43□□□□□ -1.22
CTNNA1-243ENST00000540387 CKS2P33552 79 aa7.43□□□□□ -1.22
CTNNA1-243ENST00000540387 UBE2D1P51668 147 aa7.43□□□□□ -1.22
CTNNA1-243ENST00000540387 ADORA2A-AS1P86434 159 aa7.43□□□□□ -1.22
CTNNA1-243ENST00000540387 C1orf229Q6ZS94 237 aaPredicted RBP7.43□□□□□ -1.22
CTNNA1-243ENST00000540387 GNG12Q9UBI6 72 aa7.43□□□□□ -1.22
CTNNA1-243ENST00000540387 C15orf65H3BRN8 121 aa7.42□□□□□ -1.22
CTNNA1-243ENST00000540387 IGLV2-11P01706 119 aa7.42□□□□□ -1.22
CTNNA1-243ENST00000540387 TNFRSF1AP19438 455 aa7.42□□□□□ -1.22
CTNNA1-243ENST00000540387 CDSNQ15517 529 aa7.42□□□□□ -1.22
CTNNA1-243ENST00000540387 FAM19A5Q7Z5A7 132 aaPredicted RBP7.42□□□□□ -1.22
CTNNA1-243ENST00000540387 SIGLEC9Q9Y336 463 aa7.42□□□□□ -1.22
CTNNA1-243ENST00000540387 SPTBN1Q01082 2364 aaKnown RBP7.42□□□□□ -1.22
CTNNA1-243ENST00000540387 ZNF462Q96JM2 2506 aa7.42□□□□□ -1.22
CTNNA1-243ENST00000540387 CADP27708 2225 aa7.42□□□□□ -1.22
CTNNA1-243ENST00000540387 OR11H6Q8NGC7 330 aa7.42□□□□□ -1.22
CTNNA1-243ENST00000540387 ASCL2Q99929 193 aa7.42□□□□□ -1.22
CTNNA1-243ENST00000540387 SLC25A15Q9Y619 301 aa7.42□□□□□ -1.22
CTNNA1-243ENST00000540387 SLC25A20O43772 301 aa7.41□□□□□ -1.22
CTNNA1-243ENST00000540387 IGKV3-15P01624 115 aa7.41□□□□□ -1.22
CTNNA1-243ENST00000540387 GRPP07492 148 aa7.41□□□□□ -1.22
CTNNA1-243ENST00000540387 ZNF134P52741 427 aa7.41□□□□□ -1.22
CTNNA1-243ENST00000540387 MRPL23Q16540 153 aaKnown RBP7.41□□□□□ -1.22
CTNNA1-243ENST00000540387 LYZL1Q6UWQ5 148 aa7.41□□□□□ -1.22
CTNNA1-243ENST00000540387 GOLT1AQ6ZVE7 132 aa7.41□□□□□ -1.22
CTNNA1-243ENST00000540387 FAM90A1Q86YD7 464 aa7.41□□□□□ -1.22
CTNNA1-243ENST00000540387 NPIPB3Q92617 1050 aa7.41□□□□□ -1.22
CTNNA1-243ENST00000540387 IGHV3-48P01763 117 aa7.41□□□□□ -1.22
CTNNA1-243ENST00000540387 C11orf53Q8IXP5 236 aa7.41□□□□□ -1.22
CTNNA1-243ENST00000540387 CHD6Q8TD26 2715 aa7.41□□□□□ -1.22
CTNNA1-243ENST00000540387 IGKV1D-37A0A075B6S9 117 aa7.4□□□□□ -1.22
CTNNA1-243ENST00000540387 ORM2P19652 201 aa7.4□□□□□ -1.22
CTNNA1-243ENST00000540387 ATP5IP56385 69 aaPredicted RBP7.4□□□□□ -1.22
CTNNA1-243ENST00000540387 ZNF843Q8N446 348 aa7.4□□□□□ -1.22
CTNNA1-243ENST00000540387 AAMDCQ9H7C9 122 aa7.4□□□□□ -1.22
CTNNA1-243ENST00000540387 LINC01546A6NGU7 62 aa7.4□□□□□ -1.23
CTNNA1-243ENST00000540387 C9JAW5 83 aa7.4□□□□□ -1.23
CTNNA1-243ENST00000540387 DUSP14O95147 198 aaKnown RBP7.4□□□□□ -1.23
CTNNA1-243ENST00000540387 NDUFA3O95167 84 aa7.4□□□□□ -1.23
CTNNA1-243ENST00000540387 LGALS1P09382 135 aaKnown RBP7.4□□□□□ -1.23
CTNNA1-243ENST00000540387 CECR9P0C854 216 aa7.4□□□□□ -1.23
CTNNA1-243ENST00000540387 LINC01559Q495D7 138 aa7.4□□□□□ -1.23
CTNNA1-243ENST00000540387 Q8N1Y9 231 aa7.4□□□□□ -1.23
CTNNA1-243ENST00000540387 PIMREGQ9BSJ6 248 aa7.4□□□□□ -1.23
CTNNA1-243ENST00000540387 OBP2BQ9NPH6 170 aa7.4□□□□□ -1.23
CTNNA1-243ENST00000540387 HIGD1AQ9Y241 93 aa7.4□□□□□ -1.23
CTNNA1-243ENST00000540387 SPTAN1Q13813 2472 aaKnown RBP7.4□□□□□ -1.23
CTNNA1-243ENST00000540387 IGHV1-18A0A0C4DH31 117 aa7.39□□□□□ -1.23
CTNNA1-243ENST00000540387 GP9P14770 177 aa7.39□□□□□ -1.23
CTNNA1-243ENST00000540387 GRNP28799 593 aaKnown RBP7.39□□□□□ -1.23
CTNNA1-243ENST00000540387 CRIP1P50238 77 aa7.39□□□□□ -1.23
CTNNA1-243ENST00000540387 ZNF826PQ6ZT77 177 aa7.39□□□□□ -1.23
CTNNA1-243ENST00000540387 LRRC75A-AS1Q8N1F1 130 aa7.39□□□□□ -1.23
CTNNA1-243ENST00000540387 BAALCQ8WXS3 180 aa7.39□□□□□ -1.23
CTNNA1-243ENST00000540387 ROS1P08922 2347 aa7.39□□□□□ -1.23
CTNNA1-243ENST00000540387 TRAV8-4A0A0B4J246 113 aa7.39□□□□□ -1.23
CTNNA1-243ENST00000540387 J3KT08 172 aa7.39□□□□□ -1.23
CTNNA1-243ENST00000540387 UPK2O00526 184 aa7.39□□□□□ -1.23
CTNNA1-243ENST00000540387 NPFFO15130 113 aa7.39□□□□□ -1.23
CTNNA1-243ENST00000540387 IGLV1-44P01699 117 aa7.39□□□□□ -1.23
CTNNA1-243ENST00000540387 CD7P09564 240 aa7.39□□□□□ -1.23
CTNNA1-243ENST00000540387 EDDM3AQ14507 147 aa7.39□□□□□ -1.23
CTNNA1-243ENST00000540387 NTN5Q8WTR8 489 aaPredicted RBP7.39□□□□□ -1.23
CTNNA1-243ENST00000540387 OOSP1A8MZH6 123 aa7.38□□□□□ -1.23
CTNNA1-243ENST00000540387 M0R1B8 84 aa7.38□□□□□ -1.23
CTNNA1-243ENST00000540387 HOXB4P17483 251 aaPredicted RBP7.38□□□□□ -1.23
CTNNA1-243ENST00000540387 CRIP2P52943 208 aaPredicted RBP7.38□□□□□ -1.23
CTNNA1-243ENST00000540387 NDUFA11Q86Y39 141 aa7.38□□□□□ -1.23
CTNNA1-243ENST00000540387 TMEM101Q96IK0 257 aa7.38□□□□□ -1.23
CTNNA1-243ENST00000540387 ONECUT1Q9UBC0 465 aa7.38□□□□□ -1.23
CTNNA1-243ENST00000540387 MYO18BQ8IUG5 2567 aa7.38□□□□□ -1.23
CTNNA1-243ENST00000540387 TRAV2A0A0B4J234 112 aa7.38□□□□□ -1.23
CTNNA1-243ENST00000540387 GAS8-AS1O95177 125 aa7.38□□□□□ -1.23
CTNNA1-243ENST00000540387 POU2AF1Q16633 256 aa7.38□□□□□ -1.23
CTNNA1-243ENST00000540387 TMEM155Q4W5P6 130 aa7.38□□□□□ -1.23
CTNNA1-243ENST00000540387 UTF1Q5T230 341 aa7.38□□□□□ -1.23
CTNNA1-243ENST00000540387 EXOC3-AS1Q8N2X6 119 aa7.38□□□□□ -1.23
CTNNA1-243ENST00000540387 OTORQ9NRC9 128 aa7.38□□□□□ -1.23
CTNNA1-243ENST00000540387 MRPL36Q9P0J6 103 aaKnown RBP7.38□□□□□ -1.23
CTNNA1-243ENST00000540387 FLNCQ14315 2725 aa7.38□□□□□ -1.23
CTNNA1-243ENST00000540387 NDUFA7O95182 113 aa7.37□□□□□ -1.23
CTNNA1-243ENST00000540387 PRB4P10163 310 aaPredicted RBP7.37□□□□□ -1.23
CTNNA1-243ENST00000540387 SRSF9Q13242 221 aaKnown RBP eCLIP7.37□□□□□ -1.23
CTNNA1-243ENST00000540387 LINC01560Q8TB33 94 aa7.37□□□□□ -1.23
CTNNA1-243ENST00000540387 LEAP2Q969E1 77 aa7.37□□□□□ -1.23
CTNNA1-243ENST00000540387 KMT2BQ9UMN6 2715 aaPredicted RBP7.37□□□□□ -1.23
CTNNA1-243ENST00000540387 FAM208BQ5VWN6 2430 aa7.37□□□□□ -1.23
CTNNA1-243ENST00000540387 COL12A1Q99715 3063 aa7.37□□□□□ -1.23
CTNNA1-243ENST00000540387 TRBV6-1A0A0K0K1D8 114 aa7.37□□□□□ -1.23
CTNNA1-243ENST00000540387 PLNP26678 52 aa7.37□□□□□ -1.23
CTNNA1-243ENST00000540387 LOXL3P58215 753 aa7.37□□□□□ -1.23
CTNNA1-243ENST00000540387 HES1Q14469 280 aa7.37□□□□□ -1.23
CTNNA1-243ENST00000540387 FBXL19-AS1Q494R0 122 aa7.37□□□□□ -1.23
CTNNA1-243ENST00000540387 C9orf153Q5TBE3 101 aa7.37□□□□□ -1.23
CTNNA1-243ENST00000540387 THAP8Q8NA92 274 aa7.37□□□□□ -1.23
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms