RNA–Protein interactions for RNA: ENST00000539417.6

RPAIN-206, Transcript of RPA interacting protein, humanhuman

TSL 2

Gene RPAIN, Length 1,471 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RPAIN-206ENST00000539417 H7BYZ3 331 aa11.23□□□□□ -0.61
RPAIN-206ENST00000539417 GPX1P07203 203 aa11.23□□□□□ -0.61
RPAIN-206ENST00000539417 EIF5AP63241 154 aaKnown RBP11.23□□□□□ -0.61
RPAIN-206ENST00000539417 C5orf17Q8NAS9 161 aa11.23□□□□□ -0.61
RPAIN-206ENST00000539417 SFT2D1Q8WV19 159 aa11.23□□□□□ -0.61
RPAIN-206ENST00000539417 LINC00479Q96M42 142 aa11.23□□□□□ -0.61
RPAIN-206ENST00000539417 C20orf144Q9BQM9 153 aa11.23□□□□□ -0.61
RPAIN-206ENST00000539417 EPDR1Q9UM22 224 aa11.23□□□□□ -0.61
RPAIN-206ENST00000539417 IGLV2-11P01706 119 aa11.22□□□□□ -0.61
RPAIN-206ENST00000539417 CCL20P78556 96 aa11.22□□□□□ -0.61
RPAIN-206ENST00000539417 RNASE8Q8TDE3 154 aaKnown RBP11.22□□□□□ -0.61
RPAIN-206ENST00000539417 TMEM189A5PLL7 270 aa11.21□□□□□ -0.61
RPAIN-206ENST00000539417 SPART-AS1P0CW21 52 aa11.21□□□□□ -0.61
RPAIN-206ENST00000539417 ARL6IP6Q8N6S5 226 aa11.21□□□□□ -0.61
RPAIN-206ENST00000539417 NIPSNAP3BQ9BS92 247 aa11.21□□□□□ -0.61
RPAIN-206ENST00000539417 TP53TG3Q9ULZ0 132 aa11.21□□□□□ -0.61
RPAIN-206ENST00000539417 VPS13DQ5THJ4 4388 aa11.21□□□□□ -0.61
RPAIN-206ENST00000539417 TRAV34A0A0B4J273 112 aa11.2□□□□□ -0.62
RPAIN-206ENST00000539417 F6UZH7 168 aa11.2□□□□□ -0.62
RPAIN-206ENST00000539417 NMBP08949 121 aa11.2□□□□□ -0.62
RPAIN-206ENST00000539417 ATP5G3P48201 142 aa11.2□□□□□ -0.62
RPAIN-206ENST00000539417 C8orf49Q96NF6 230 aa11.2□□□□□ -0.62
RPAIN-206ENST00000539417 TRBV7-9A0A0J9YWB2 115 aa11.19□□□□□ -0.62
RPAIN-206ENST00000539417 NUPR2A6NF83 97 aa11.19□□□□□ -0.62
RPAIN-206ENST00000539417 PAGE4O60829 102 aa11.19□□□□□ -0.62
RPAIN-206ENST00000539417 H2AFB1P0C5Y9 115 aa11.19□□□□□ -0.62
RPAIN-206ENST00000539417 DPPA3Q6W0C5 159 aa11.19□□□□□ -0.62
RPAIN-206ENST00000539417 CCDC28AQ8IWP9 274 aa11.19□□□□□ -0.62
RPAIN-206ENST00000539417 PSG8Q9UQ74 426 aa11.19□□□□□ -0.62
RPAIN-206ENST00000539417 SULT1A2P50226 295 aa11.19□□□□□ -0.62
RPAIN-206ENST00000539417 ZNF80P51504 273 aaPredicted RBP11.19□□□□□ -0.62
RPAIN-206ENST00000539417 MUC21Q5SSG8 566 aa11.19□□□□□ -0.62
RPAIN-206ENST00000539417 TMEM263Q8WUH6 116 aaKnown RBP11.19□□□□□ -0.62
RPAIN-206ENST00000539417 C16orf74Q96GX8 76 aa11.19□□□□□ -0.62
RPAIN-206ENST00000539417 PYGO2Q9BRQ0 406 aa11.19□□□□□ -0.62
RPAIN-206ENST00000539417 ATG101Q9BSB4 218 aa11.19□□□□□ -0.62
RPAIN-206ENST00000539417 NOP10Q9NPE3 64 aaKnown RBP11.19□□□□□ -0.62
RPAIN-206ENST00000539417 LENEPQ9Y5L5 61 aa11.19□□□□□ -0.62
RPAIN-206ENST00000539417 PEX7O00628 323 aa11.18□□□□□ -0.62
RPAIN-206ENST00000539417 CST9LP1Q5W188 147 aa11.18□□□□□ -0.62
RPAIN-206ENST00000539417 PRNTQ86SH4 94 aa11.18□□□□□ -0.62
RPAIN-206ENST00000539417 CYB561D1Q8N8Q1 229 aa11.18□□□□□ -0.62
RPAIN-206ENST00000539417 C11orf72Q8NBR9 251 aa11.18□□□□□ -0.62
RPAIN-206ENST00000539417 TREM1Q9NP99 234 aa11.18□□□□□ -0.62
RPAIN-206ENST00000539417 Q6AWC8 147 aa11.17□□□□□ -0.62
RPAIN-206ENST00000539417 LINC00467Q9BRT7 94 aa11.17□□□□□ -0.62
RPAIN-206ENST00000539417 GSN-AS1Q9NRJ2 163 aa11.17□□□□□ -0.62
RPAIN-206ENST00000539417 IGHV1OR15-1A0A075B7D0 117 aa11.16□□□□□ -0.62
RPAIN-206ENST00000539417 DEFB131BA0A096LNP1 70 aa11.16□□□□□ -0.62
RPAIN-206ENST00000539417 TRAV10A0A0B4J240 114 aa11.16□□□□□ -0.62
RPAIN-206ENST00000539417 SERTM2A0A1B0GWG4 89 aa11.16□□□□□ -0.62
RPAIN-206ENST00000539417 CBY3A6NI87 242 aa11.16□□□□□ -0.62
RPAIN-206ENST00000539417 DEFB130BP0DP73 79 aa11.16□□□□□ -0.62
RPAIN-206ENST00000539417 DEFB130AP0DP74 79 aa11.16□□□□□ -0.62
RPAIN-206ENST00000539417 FLI1Q01543 452 aaPredicted RBP11.16□□□□□ -0.62
RPAIN-206ENST00000539417 ALKAL2Q6UX46 152 aa11.16□□□□□ -0.62
RPAIN-206ENST00000539417 ZNF493Q6ZR52 646 aa11.16□□□□□ -0.62
RPAIN-206ENST00000539417 EIF4E3Q8N5X7 224 aaKnown RBP11.16□□□□□ -0.62
RPAIN-206ENST00000539417 TMEM75Q8N9X5 138 aa11.16□□□□□ -0.62
RPAIN-206ENST00000539417 MED9Q9NWA0 146 aa11.16□□□□□ -0.62
RPAIN-206ENST00000539417 KLF12Q9Y4X4 402 aa11.16□□□□□ -0.62
RPAIN-206ENST00000539417 LYRM9A8MSI8 78 aa11.15□□□□□ -0.62
RPAIN-206ENST00000539417 IGLL5B9A064 214 aa11.15□□□□□ -0.62
RPAIN-206ENST00000539417 HTN3P15516 51 aa11.15□□□□□ -0.62
RPAIN-206ENST00000539417 RAB5CP51148 216 aa11.15□□□□□ -0.62
RPAIN-206ENST00000539417 DAD1P61803 113 aa11.15□□□□□ -0.62
RPAIN-206ENST00000539417 EIF5AL1Q6IS14 154 aaKnown RBP11.15□□□□□ -0.62
RPAIN-206ENST00000539417 C2CD4CQ8TF44 421 aa11.15□□□□□ -0.62
RPAIN-206ENST00000539417 C11orf21Q9P2W6 132 aa11.15□□□□□ -0.62
RPAIN-206ENST00000539417 TIMM8BQ9Y5J9 83 aaPredicted RBP11.15□□□□□ -0.62
RPAIN-206ENST00000539417 LCE6AA0A183 80 aa11.14□□□□□ -0.63
RPAIN-206ENST00000539417 C11orf94C9JXX5 98 aa11.14□□□□□ -0.63
RPAIN-206ENST00000539417 ANXA2RQ3ZCQ2 193 aa11.14□□□□□ -0.63
RPAIN-206ENST00000539417 Q86TA4 180 aa11.14□□□□□ -0.63
RPAIN-206ENST00000539417 KLK5Q9Y337 293 aaPredicted RBP11.14□□□□□ -0.63
RPAIN-206ENST00000539417 ARL2-SNX15V9GYD0 113 aa11.14□□□□□ -0.63
RPAIN-206ENST00000539417 TRAV1-1A0A0B4J248 108 aa11.13□□□□□ -0.63
RPAIN-206ENST00000539417 SCO2A0A1W2PP80 73 aa11.13□□□□□ -0.63
RPAIN-206ENST00000539417 K7EQM0 130 aa11.13□□□□□ -0.63
RPAIN-206ENST00000539417 COMMD7Q86VX2 200 aa11.13□□□□□ -0.63
RPAIN-206ENST00000539417 NKX6-2Q9C056 277 aaPredicted RBP11.13□□□□□ -0.63
RPAIN-206ENST00000539417 MDFICQ9P1T7 246 aa11.13□□□□□ -0.63
RPAIN-206ENST00000539417 GNG13Q9P2W3 67 aa11.13□□□□□ -0.63
RPAIN-206ENST00000539417 NAGKQ9UJ70 344 aa11.13□□□□□ -0.63
RPAIN-206ENST00000539417 APLNQ9ULZ1 77 aa11.13□□□□□ -0.63
RPAIN-206ENST00000539417 GAGE12BA1L429 117 aa11.12□□□□□ -0.63
RPAIN-206ENST00000539417 GNRH2O43555 120 aa11.12□□□□□ -0.63
RPAIN-206ENST00000539417 GAGE7O76087 117 aa11.12□□□□□ -0.63
RPAIN-206ENST00000539417 GCGP01275 180 aa11.12□□□□□ -0.63
RPAIN-206ENST00000539417 GAGE12FP0CL80 117 aa11.12□□□□□ -0.63
RPAIN-206ENST00000539417 GAGE12GP0CL81 117 aa11.12□□□□□ -0.63
RPAIN-206ENST00000539417 GAGE12IP0CL82 117 aa11.12□□□□□ -0.63
RPAIN-206ENST00000539417 Q6ZTI0 123 aa11.12□□□□□ -0.63
RPAIN-206ENST00000539417 LINC00612Q8N6U2 182 aa11.12□□□□□ -0.63
RPAIN-206ENST00000539417 HIST1H2BAQ96A08 127 aa11.12□□□□□ -0.63
RPAIN-206ENST00000539417 IGHV4-4A0A075B6R2 117 aa11.12□□□□□ -0.63
RPAIN-206ENST00000539417 TEX48A0A1B0GUV7 120 aa11.12□□□□□ -0.63
RPAIN-206ENST00000539417 SNURFLB1AK76 121 aa11.12□□□□□ -0.63
RPAIN-206ENST00000539417 TMEM183BQ1AE95 376 aa11.12□□□□□ -0.63
RPAIN-206ENST00000539417 TMEM183AQ8IXX5 376 aa11.12□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 67.6 ms