RNA–Protein interactions for RNA: ENST00000538224.1

USP28-206, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 582 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-206ENST00000538224 EBLN2Q6P2I7 272 aa5.07□□□□□ -1.6
USP28-206ENST00000538224 ZNF705AQ6ZN79 300 aaPredicted RBP5.07□□□□□ -1.6
USP28-206ENST00000538224 Q71RC1 249 aaPredicted RBP5.07□□□□□ -1.6
USP28-206ENST00000538224 GPHB5Q86YW7 130 aa5.07□□□□□ -1.6
USP28-206ENST00000538224 ZNF843Q8N446 348 aa5.07□□□□□ -1.6
USP28-206ENST00000538224 MAP1LC3AQ9H492 121 aa5.07□□□□□ -1.6
USP28-206ENST00000538224 LINC00527Q9UJ94 153 aa5.07□□□□□ -1.6
USP28-206ENST00000538224 VPREB3Q9UKI3 123 aa5.07□□□□□ -1.6
USP28-206ENST00000538224 RNF114Q9Y508 228 aa5.07□□□□□ -1.6
USP28-206ENST00000538224 ACACBO00763 2458 aa5.07□□□□□ -1.6
USP28-206ENST00000538224 USP9XQ93008 2570 aaPredicted RBP5.07□□□□□ -1.6
USP28-206ENST00000538224 CR1P17927 2039 aa5.06□□□□□ -1.6
USP28-206ENST00000538224 AKAP6Q13023 2319 aa5.06□□□□□ -1.6
USP28-206ENST00000538224 IGHV4-4A0A075B6R2 117 aa5.06□□□□□ -1.6
USP28-206ENST00000538224 IGHV3-49A0A0A0MS15 119 aa5.06□□□□□ -1.6
USP28-206ENST00000538224 TMEM213A2RRL7 107 aa5.06□□□□□ -1.6
USP28-206ENST00000538224 OR4C46A6NHA9 309 aa5.06□□□□□ -1.6
USP28-206ENST00000538224 SOCS3O14543 225 aa5.06□□□□□ -1.6
USP28-206ENST00000538224 SNAI2O43623 268 aa5.06□□□□□ -1.6
USP28-206ENST00000538224 TCF21O43680 179 aa5.06□□□□□ -1.6
USP28-206ENST00000538224 TGFAP01135 160 aa5.06□□□□□ -1.6
USP28-206ENST00000538224 IGHV4-59P01825 116 aa5.06□□□□□ -1.6
USP28-206ENST00000538224 HBDP02042 147 aa5.06□□□□□ -1.6
USP28-206ENST00000538224 ELANEP08246 267 aa5.06□□□□□ -1.6
USP28-206ENST00000538224 IGLC3P0DOY3 106 aa5.06□□□□□ -1.6
USP28-206ENST00000538224 CD33P20138 364 aa5.06□□□□□ -1.6
USP28-206ENST00000538224 PSMB8P28062 276 aa5.06□□□□□ -1.6
USP28-206ENST00000538224 HNRNPA3P51991 378 aaKnown RBP5.06□□□□□ -1.6
USP28-206ENST00000538224 BLCAPP62952 87 aa5.06□□□□□ -1.6
USP28-206ENST00000538224 DEFB113Q30KQ7 82 aa5.06□□□□□ -1.6
USP28-206ENST00000538224 DEFB112Q30KQ8 113 aa5.06□□□□□ -1.6
USP28-206ENST00000538224 PSMG4Q5JS54 123 aa5.06□□□□□ -1.6
USP28-206ENST00000538224 IGFL4Q6B9Z1 124 aa5.06□□□□□ -1.6
USP28-206ENST00000538224 PRSS57Q6UWY2 283 aa5.06□□□□□ -1.6
USP28-206ENST00000538224 UNQ9165/PRO28630Q6UXU0 137 aa5.06□□□□□ -1.6
USP28-206ENST00000538224 SPATA12Q7Z6I5 190 aa5.06□□□□□ -1.6
USP28-206ENST00000538224 AMN1Q8IY45 258 aa5.06□□□□□ -1.6
USP28-206ENST00000538224 MS4A6AQ9H2W1 248 aa5.06□□□□□ -1.6
USP28-206ENST00000538224 ST20Q9HBF5 79 aa5.06□□□□□ -1.6
USP28-206ENST00000538224 NXT2Q9NPJ8 142 aaKnown RBP5.06□□□□□ -1.6
USP28-206ENST00000538224 SMPXQ9UHP9 88 aa5.06□□□□□ -1.6
USP28-206ENST00000538224 PRRC2AP48634 2157 aaKnown RBP5.05□□□□□ -1.6
USP28-206ENST00000538224 IGHV3OR16-13A0A075B7E8 117 aa5.05□□□□□ -1.6
USP28-206ENST00000538224 IGHV3-74A0A0B4J1X5 117 aa5.05□□□□□ -1.6
USP28-206ENST00000538224 SMAD7O15105 426 aaKnown RBP5.05□□□□□ -1.6
USP28-206ENST00000538224 AVPP01185 164 aa5.05□□□□□ -1.6
USP28-206ENST00000538224 TRBV12-3P01733 135 aa5.05□□□□□ -1.6
USP28-206ENST00000538224 IGHV3-11P01762 117 aa5.05□□□□□ -1.6
USP28-206ENST00000538224 CSN3P07498 182 aa5.05□□□□□ -1.6
USP28-206ENST00000538224 LGALS1P09382 135 aaKnown RBP5.05□□□□□ -1.6
USP28-206ENST00000538224 IGHV4-31P0DP07 118 aa5.05□□□□□ -1.6
USP28-206ENST00000538224 Q6YL49 198 aa5.05□□□□□ -1.6
USP28-206ENST00000538224 APRG1Q8IVJ8 170 aa5.05□□□□□ -1.6
USP28-206ENST00000538224 DPF1Q92782 380 aa5.05□□□□□ -1.6
USP28-206ENST00000538224 ODF3Q96PU9 254 aa5.05□□□□□ -1.6
USP28-206ENST00000538224 PSMG3-AS1Q96PY0 264 aa5.05□□□□□ -1.6
USP28-206ENST00000538224 RHPN1-AS1Q9BWJ2 59 aa5.05□□□□□ -1.6
USP28-206ENST00000538224 KLK15Q9H2R5 256 aa5.05□□□□□ -1.6
USP28-206ENST00000538224 SIGLEC8Q9NYZ4 499 aa5.05□□□□□ -1.6
USP28-206ENST00000538224 LINC01546A6NGU7 62 aa5.04□□□□□ -1.6
USP28-206ENST00000538224 TMEM238C9JI98 176 aa5.04□□□□□ -1.6
USP28-206ENST00000538224 RNF223E7ERA6 249 aa5.04□□□□□ -1.6
USP28-206ENST00000538224 M0QZ24 198 aa5.04□□□□□ -1.6
USP28-206ENST00000538224 LGALS9O00182 355 aa5.04□□□□□ -1.6
USP28-206ENST00000538224 EREGO14944 169 aa5.04□□□□□ -1.6
USP28-206ENST00000538224 PRB1P04280 392 aa5.04□□□□□ -1.6
USP28-206ENST00000538224 NPSP0C0P6 89 aa5.04□□□□□ -1.6
USP28-206ENST00000538224 LEPP41159 167 aa5.04□□□□□ -1.6
USP28-206ENST00000538224 ASIPP42127 132 aa5.04□□□□□ -1.6
USP28-206ENST00000538224 SNRPD3P62318 126 aaKnown RBP5.04□□□□□ -1.6
USP28-206ENST00000538224 RPL11P62913 178 aaKnown RBP5.04□□□□□ -1.6
USP28-206ENST00000538224 LGALS9BQ3B8N2 356 aa5.04□□□□□ -1.6
USP28-206ENST00000538224 TDRG1Q3Y452 100 aa5.04□□□□□ -1.6
USP28-206ENST00000538224 TM4SF20Q53R12 229 aa5.04□□□□□ -1.6
USP28-206ENST00000538224 Q5PR19 223 aa5.04□□□□□ -1.6
USP28-206ENST00000538224 SPANXN1Q5VSR9 72 aa5.04□□□□□ -1.6
USP28-206ENST00000538224 LINC01545Q5VT33 79 aa5.04□□□□□ -1.6
USP28-206ENST00000538224 LGALS9CQ6DKI2 356 aa5.04□□□□□ -1.6
USP28-206ENST00000538224 Q6ZN92 141 aa5.04□□□□□ -1.6
USP28-206ENST00000538224 TMEM86BQ8N661 226 aa5.04□□□□□ -1.6
USP28-206ENST00000538224 DEFB125Q8N687 156 aa5.04□□□□□ -1.6
USP28-206ENST00000538224 RNF152Q8N8N0 203 aa5.04□□□□□ -1.6
USP28-206ENST00000538224 OR8A1Q8NGG7 326 aa5.04□□□□□ -1.6
USP28-206ENST00000538224 MYOZ3Q8TDC0 251 aa5.04□□□□□ -1.6
USP28-206ENST00000538224 MRAP2Q96G30 205 aa5.04□□□□□ -1.6
USP28-206ENST00000538224 BBC3Q96PG8 261 aaPredicted RBP5.04□□□□□ -1.6
USP28-206ENST00000538224 PMCHL2Q9BQD1 86 aa5.04□□□□□ -1.6
USP28-206ENST00000538224 ZNF747Q9BV97 191 aa5.04□□□□□ -1.6
USP28-206ENST00000538224 SNHG12Q9BXW3 62 aa5.04□□□□□ -1.6
USP28-206ENST00000538224 MRPS16Q9Y3D3 137 aaKnown RBP5.04□□□□□ -1.6
USP28-206ENST00000538224 ASH1LQ9NR48 2969 aaKnown RBP5.04□□□□□ -1.6
USP28-206ENST00000538224 IGKV3D-20A0A0C4DH25 116 aa5.03□□□□□ -1.6
USP28-206ENST00000538224 A1L4Q6 167 aa5.03□□□□□ -1.6
USP28-206ENST00000538224 K7EMI3 77 aa5.03□□□□□ -1.6
USP28-206ENST00000538224 PPP1R17O96001 155 aa5.03□□□□□ -1.6
USP28-206ENST00000538224 NPYP01303 97 aa5.03□□□□□ -1.6
USP28-206ENST00000538224 S100A4P26447 101 aaKnown RBP5.03□□□□□ -1.6
USP28-206ENST00000538224 IFI27P40305 119 aaPredicted RBP5.03□□□□□ -1.6
USP28-206ENST00000538224 COL5A1-AS1Q5SY13 56 aa5.03□□□□□ -1.6
USP28-206ENST00000538224 ZFAND2AQ8N6M9 145 aa5.03□□□□□ -1.6
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms