RNA–Protein interactions for RNA: ENST00000536239.1

SKA3-207, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 438 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-207ENST00000536239 UBE2D1P51668 147 aa1.87□□□□□ -2.11
SKA3-207ENST00000536239 DLX1P56177 255 aa1.87□□□□□ -2.11
SKA3-207ENST00000536239 FXYD4P59646 89 aa1.87□□□□□ -2.11
SKA3-207ENST00000536239 NPC2P61916 151 aa1.87□□□□□ -2.11
SKA3-207ENST00000536239 HIST1H4AP62805 103 aaKnown RBP1.87□□□□□ -2.11
SKA3-207ENST00000536239 CCL8P80075 99 aa1.87□□□□□ -2.11
SKA3-207ENST00000536239 ZNF56Q15929 161 aa1.87□□□□□ -2.11
SKA3-207ENST00000536239 VMA21Q3ZAQ7 101 aa1.87□□□□□ -2.11
SKA3-207ENST00000536239 CENPWQ5EE01 88 aa1.87□□□□□ -2.11
SKA3-207ENST00000536239 SPANXN5Q5MJ07 72 aa1.87□□□□□ -2.11
SKA3-207ENST00000536239 GDF5OSQ5U4N7 250 aa1.87□□□□□ -2.11
SKA3-207ENST00000536239 C22orf39Q6P5X5 142 aa1.87□□□□□ -2.11
SKA3-207ENST00000536239 LINC00643Q86TS7 51 aa1.87□□□□□ -2.11
SKA3-207ENST00000536239 MARCH3Q86UD3 253 aa1.87□□□□□ -2.11
SKA3-207ENST00000536239 PCP2Q8IVA1 136 aa1.87□□□□□ -2.11
SKA3-207ENST00000536239 ARL17AQ8IVW1 177 aa1.87□□□□□ -2.11
SKA3-207ENST00000536239 DRAM1Q8N682 238 aa1.87□□□□□ -2.11
SKA3-207ENST00000536239 C3orf56Q8N813 242 aa1.87□□□□□ -2.11
SKA3-207ENST00000536239 NABP1Q96AH0 204 aa1.87□□□□□ -2.11
SKA3-207ENST00000536239 FAM19A4Q96LR4 140 aa1.87□□□□□ -2.11
SKA3-207ENST00000536239 HMCN1Q96RW7 5635 aa1.87□□□□□ -2.11
SKA3-207ENST00000536239 TRGV9Q99603 122 aa1.87□□□□□ -2.11
SKA3-207ENST00000536239 DPH3P1Q9H4G8 78 aa1.87□□□□□ -2.11
SKA3-207ENST00000536239 TNS1Q9HBL0 1735 aaKnown RBP1.87□□□□□ -2.11
SKA3-207ENST00000536239 RETNQ9HD89 108 aa1.87□□□□□ -2.11
SKA3-207ENST00000536239 NXT2Q9NPJ8 142 aaKnown RBP1.87□□□□□ -2.11
SKA3-207ENST00000536239 TMEM167BQ9NRX6 74 aa1.87□□□□□ -2.11
SKA3-207ENST00000536239 GNG12Q9UBI6 72 aa1.87□□□□□ -2.11
SKA3-207ENST00000536239 KLK5Q9Y337 293 aaPredicted RBP1.87□□□□□ -2.11
SKA3-207ENST00000536239 F11RQ9Y624 299 aaKnown RBP1.87□□□□□ -2.11
SKA3-207ENST00000536239 GOLGA4Q13439 2230 aaKnown RBP1.87□□□□□ -2.11
SKA3-207ENST00000536239 LTBP1Q14766 1721 aa1.86□□□□□ -2.11
SKA3-207ENST00000536239 LRP4O75096 1905 aa1.86□□□□□ -2.11
SKA3-207ENST00000536239 TRAV26-2A0A0B4J265 109 aa1.86□□□□□ -2.11
SKA3-207ENST00000536239 C19orf71A6NCJ1 209 aa1.86□□□□□ -2.11
SKA3-207ENST00000536239 HIGD1CA8MV81 97 aa1.86□□□□□ -2.11
SKA3-207ENST00000536239 TMEM150CB9EJG8 249 aa1.86□□□□□ -2.11
SKA3-207ENST00000536239 LMO7DNF2Z398 122 aa1.86□□□□□ -2.11
SKA3-207ENST00000536239 H3BMM0 161 aa1.86□□□□□ -2.11
SKA3-207ENST00000536239 H3BP45 60 aa1.86□□□□□ -2.11
SKA3-207ENST00000536239 H3BT86 120 aa1.86□□□□□ -2.11
SKA3-207ENST00000536239 K7EQS6 105 aa1.86□□□□□ -2.11
SKA3-207ENST00000536239 CXCL13O43927 109 aa1.86□□□□□ -2.11
SKA3-207ENST00000536239 LYZL6O75951 148 aa1.86□□□□□ -2.11
SKA3-207ENST00000536239 OXTP01178 125 aa1.86□□□□□ -2.11
SKA3-207ENST00000536239 LTAP01374 205 aa1.86□□□□□ -2.11
SKA3-207ENST00000536239 IGLV2-8P01709 118 aa1.86□□□□□ -2.11
SKA3-207ENST00000536239 IGLV3-27P01718 113 aa1.86□□□□□ -2.11
SKA3-207ENST00000536239 HBDP02042 147 aa1.86□□□□□ -2.11
SKA3-207ENST00000536239 FREM3P0C091 2139 aa1.86□□□□□ -2.11
SKA3-207ENST00000536239 SPTBP11277 2137 aa1.86□□□□□ -2.11
SKA3-207ENST00000536239 CCL1P22362 96 aa1.86□□□□□ -2.11
SKA3-207ENST00000536239 CA6P23280 308 aa1.86□□□□□ -2.11
SKA3-207ENST00000536239 EFNA4P52798 201 aa1.86□□□□□ -2.11
SKA3-207ENST00000536239 CACNG7P62955 275 aa1.86□□□□□ -2.11
SKA3-207ENST00000536239 FXYD3Q14802 87 aa1.86□□□□□ -2.11
SKA3-207ENST00000536239 KISS1Q15726 138 aa1.86□□□□□ -2.11
SKA3-207ENST00000536239 TMEM52BQ4KMG9 183 aa1.86□□□□□ -2.11
SKA3-207ENST00000536239 TMEM155Q4W5P6 130 aa1.86□□□□□ -2.11
SKA3-207ENST00000536239 FAM201AQ5SY85 155 aa1.86□□□□□ -2.11
SKA3-207ENST00000536239 FKBP1CQ5VVH2 108 aa1.86□□□□□ -2.11
SKA3-207ENST00000536239 PLPP4Q5VZY2 271 aa1.86□□□□□ -2.11
SKA3-207ENST00000536239 C5orf38Q86SI9 138 aa1.86□□□□□ -2.11
SKA3-207ENST00000536239 LINC00311Q8N616 119 aa1.86□□□□□ -2.11
SKA3-207ENST00000536239 SERP2Q8N6R1 65 aa1.86□□□□□ -2.11
SKA3-207ENST00000536239 WDR31Q8NA23 367 aa1.86□□□□□ -2.11
SKA3-207ENST00000536239 OR8A1Q8NGG7 326 aa1.86□□□□□ -2.11
SKA3-207ENST00000536239 NT5CQ8TCD5 201 aa1.86□□□□□ -2.11
SKA3-207ENST00000536239 UBE2WQ96B02 151 aa1.86□□□□□ -2.11
SKA3-207ENST00000536239 CNRIP1Q96F85 164 aaPredicted RBP1.86□□□□□ -2.11
SKA3-207ENST00000536239 BORCS8Q96FH0 119 aa1.86□□□□□ -2.11
SKA3-207ENST00000536239 IGF2BP2-AS1Q96M15 143 aa1.86□□□□□ -2.11
SKA3-207ENST00000536239 LINC00527Q9UJ94 153 aa1.86□□□□□ -2.11
SKA3-207ENST00000536239 HHLA3Q9XRX5 114 aa1.86□□□□□ -2.11
SKA3-207ENST00000536239 WDR83OSQ9Y284 106 aa1.86□□□□□ -2.11
SKA3-207ENST00000536239 EML6Q6ZMW3 1958 aa1.86□□□□□ -2.11
SKA3-207ENST00000536239 COL5A1P20908 1838 aaPredicted RBP1.86□□□□□ -2.11
SKA3-207ENST00000536239 DYSFO75923 2080 aa1.86□□□□□ -2.11
SKA3-207ENST00000536239 MPDZO75970 2070 aa1.86□□□□□ -2.11
SKA3-207ENST00000536239 HEATR5BQ9P2D3 2071 aa1.86□□□□□ -2.11
SKA3-207ENST00000536239 COL4A2P08572 1712 aa1.86□□□□□ -2.11
SKA3-207ENST00000536239 RAI1Q7Z5J4 1906 aaPredicted RBP1.85□□□□□ -2.11
SKA3-207ENST00000536239 SNRNP200O75643 2136 aaKnown RBP1.85□□□□□ -2.11
SKA3-207ENST00000536239 IGLV1-36A0A0B4J1U3 117 aa1.85□□□□□ -2.11
SKA3-207ENST00000536239 TRGV5A0A0B4J1U4 118 aa1.85□□□□□ -2.11
SKA3-207ENST00000536239 A0A0D9SEW6 157 aa1.85□□□□□ -2.11
SKA3-207ENST00000536239 A0A0G2JRQ6 117 aa1.85□□□□□ -2.11
SKA3-207ENST00000536239 TRBV10-2A0A0K0K1G8 114 aa1.85□□□□□ -2.11
SKA3-207ENST00000536239 hADV29S1A0JD25 119 aa1.85□□□□□ -2.11
SKA3-207ENST00000536239 MYBPHLA2RUH7 354 aa1.85□□□□□ -2.11
SKA3-207ENST00000536239 C5orf63A6NC05 138 aa1.85□□□□□ -2.11
SKA3-207ENST00000536239 PGPA6NDG6 321 aa1.85□□□□□ -2.11
SKA3-207ENST00000536239 LINC01546A6NGU7 62 aa1.85□□□□□ -2.11
SKA3-207ENST00000536239 LINC01549A6NIU2 74 aa1.85□□□□□ -2.11
SKA3-207ENST00000536239 NCBP2LA6PVI3 153 aaKnown RBP1.85□□□□□ -2.11
SKA3-207ENST00000536239 SRRM5B3KS81 715 aa1.85□□□□□ -2.11
SKA3-207ENST00000536239 UPK2O00526 184 aa1.85□□□□□ -2.11
SKA3-207ENST00000536239 PEX7O00628 323 aa1.85□□□□□ -2.11
SKA3-207ENST00000536239 P01737 135 aa1.85□□□□□ -2.11
SKA3-207ENST00000536239 IGHG2P01859 326 aa1.85□□□□□ -2.11
Retrieved 100 of 20,778 RNA–protein pairs in 77.2 ms