RNA–Protein interactions for RNA: ENST00000535313.1

CLSTN3-204, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 787 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-204ENST00000535313 UPK3BQ9BT76 320 aa11.22□□□□□ -0.61
CLSTN3-204ENST00000535313 KLF12Q9Y4X4 402 aa11.22□□□□□ -0.61
CLSTN3-204ENST00000535313 HSPB11Q9Y547 144 aa11.22□□□□□ -0.61
CLSTN3-204ENST00000535313 IGHV1OR15-1A0A075B7D0 117 aa11.21□□□□□ -0.61
CLSTN3-204ENST00000535313 TRBV7-9A0A0J9YWB2 115 aa11.21□□□□□ -0.61
CLSTN3-204ENST00000535313 A0A1B0GVG6 124 aa11.21□□□□□ -0.61
CLSTN3-204ENST00000535313 TAS2R45P59539 299 aa11.21□□□□□ -0.61
CLSTN3-204ENST00000535313 KHDC3LQ587J8 217 aa11.21□□□□□ -0.61
CLSTN3-204ENST00000535313 PRR9Q5T870 116 aa11.21□□□□□ -0.61
CLSTN3-204ENST00000535313 Q8TAT8 98 aa11.21□□□□□ -0.61
CLSTN3-204ENST00000535313 TP53TG3Q9ULZ0 132 aa11.21□□□□□ -0.61
CLSTN3-204ENST00000535313 MRPS16Q9Y3D3 137 aaKnown RBP11.21□□□□□ -0.61
CLSTN3-204ENST00000535313 MUC4Q99102 2169 aa11.21□□□□□ -0.62
CLSTN3-204ENST00000535313 RBAKDNA6NC62 111 aa11.2□□□□□ -0.62
CLSTN3-204ENST00000535313 C16orf90A8MZG2 172 aa11.2□□□□□ -0.62
CLSTN3-204ENST00000535313 SMLR1H3BR10 107 aa11.2□□□□□ -0.62
CLSTN3-204ENST00000535313 RPL12P30050 165 aaKnown RBP11.2□□□□□ -0.62
CLSTN3-204ENST00000535313 VSIG2Q96IQ7 327 aa11.2□□□□□ -0.62
CLSTN3-204ENST00000535313 SMIM3Q9BZL3 60 aa11.2□□□□□ -0.62
CLSTN3-204ENST00000535313 Q9H3A6 140 aa11.2□□□□□ -0.62
CLSTN3-204ENST00000535313 A0A096LPF7 62 aa11.19□□□□□ -0.62
CLSTN3-204ENST00000535313 A0A1W2PPQ1 181 aa11.19□□□□□ -0.62
CLSTN3-204ENST00000535313 ZNF415Q09FC8 603 aa11.19□□□□□ -0.62
CLSTN3-204ENST00000535313 ST6GAL2Q96JF0 529 aa11.19□□□□□ -0.62
CLSTN3-204ENST00000535313 PAX4O43316 350 aa11.18□□□□□ -0.62
CLSTN3-204ENST00000535313 IGHV3-53P01767 116 aa11.18□□□□□ -0.62
CLSTN3-204ENST00000535313 ZNF266Q14584 549 aa11.18□□□□□ -0.62
CLSTN3-204ENST00000535313 Q6ZQT7 251 aa11.18□□□□□ -0.62
CLSTN3-204ENST00000535313 MRPL16Q9NX20 251 aaKnown RBP11.18□□□□□ -0.62
CLSTN3-204ENST00000535313 RYR1P21817 5038 aa11.18□□□□□ -0.62
CLSTN3-204ENST00000535313 RNF222A6NCQ9 220 aa11.17□□□□□ -0.62
CLSTN3-204ENST00000535313 SLAQ13239 276 aa11.17□□□□□ -0.62
CLSTN3-204ENST00000535313 OR2T35Q8NGX2 323 aa11.17□□□□□ -0.62
CLSTN3-204ENST00000535313 ASB13Q8WXK3 278 aa11.17□□□□□ -0.62
CLSTN3-204ENST00000535313 KRTAP1-5Q9BYS1 174 aa11.17□□□□□ -0.62
CLSTN3-204ENST00000535313 WFDC1Q9HC57 220 aa11.17□□□□□ -0.62
CLSTN3-204ENST00000535313 ICOSQ9Y6W8 199 aa11.17□□□□□ -0.62
CLSTN3-204ENST00000535313 DIRC3C9JPN6 131 aa11.16□□□□□ -0.62
CLSTN3-204ENST00000535313 BTF3P20290 206 aaKnown RBP11.16□□□□□ -0.62
CLSTN3-204ENST00000535313 ACOT6Q3I5F7 207 aaPredicted RBP11.16□□□□□ -0.62
CLSTN3-204ENST00000535313 FAM74A1Q5RGS3 127 aa11.16□□□□□ -0.62
CLSTN3-204ENST00000535313 MUC21Q5SSG8 566 aa11.16□□□□□ -0.62
CLSTN3-204ENST00000535313 CMTM2Q8TAZ6 248 aa11.16□□□□□ -0.62
CLSTN3-204ENST00000535313 HYLS1Q96M11 299 aa11.16□□□□□ -0.62
CLSTN3-204ENST00000535313 OTORQ9NRC9 128 aa11.16□□□□□ -0.62
CLSTN3-204ENST00000535313 PRO0255Q9UI72 69 aa11.16□□□□□ -0.62
CLSTN3-204ENST00000535313 LENEPQ9Y5L5 61 aa11.16□□□□□ -0.62
CLSTN3-204ENST00000535313 hCG_2014768A0A024R1R8 64 aa11.15□□□□□ -0.62
CLSTN3-204ENST00000535313 A0A1W2PPV4 95 aa11.15□□□□□ -0.62
CLSTN3-204ENST00000535313 FAM159AQ6UWV7 190 aa11.15□□□□□ -0.62
CLSTN3-204ENST00000535313 OR11H4Q8NGC9 324 aa11.15□□□□□ -0.62
CLSTN3-204ENST00000535313 HHLA3Q9XRX5 114 aa11.15□□□□□ -0.62
CLSTN3-204ENST00000535313 PGPA6NDG6 321 aa11.14□□□□□ -0.63
CLSTN3-204ENST00000535313 EIF3GO75821 320 aaKnown RBP eCLIP11.14□□□□□ -0.63
CLSTN3-204ENST00000535313 Q6AWC8 147 aa11.14□□□□□ -0.63
CLSTN3-204ENST00000535313 PQLC2Q6ZP29 291 aa11.14□□□□□ -0.63
CLSTN3-204ENST00000535313 TMED6Q8WW62 240 aa11.14□□□□□ -0.63
CLSTN3-204ENST00000535313 C8orf49Q96NF6 230 aa11.14□□□□□ -0.63
CLSTN3-204ENST00000535313 AQP10Q96PS8 301 aa11.14□□□□□ -0.63
CLSTN3-204ENST00000535313 MDFICQ9P1T7 246 aa11.14□□□□□ -0.63
CLSTN3-204ENST00000535313 RPH3ALQ9UNE2 315 aa11.14□□□□□ -0.63
CLSTN3-204ENST00000535313 LRP1BQ9NZR2 4599 aa11.14□□□□□ -0.63
CLSTN3-204ENST00000535313 TRGV11A0A075B6L2 103 aa11.13□□□□□ -0.63
CLSTN3-204ENST00000535313 TRGV4A0A0C4DH28 118 aa11.13□□□□□ -0.63
CLSTN3-204ENST00000535313 SIVA1O15304 175 aa11.13□□□□□ -0.63
CLSTN3-204ENST00000535313 CRYBA4P53673 196 aa11.13□□□□□ -0.63
CLSTN3-204ENST00000535313 TMEM183BQ1AE95 376 aa11.13□□□□□ -0.63
CLSTN3-204ENST00000535313 SPATA12Q7Z6I5 190 aa11.13□□□□□ -0.63
CLSTN3-204ENST00000535313 TMEM183AQ8IXX5 376 aa11.13□□□□□ -0.63
CLSTN3-204ENST00000535313 SPXQ9BT56 116 aa11.13□□□□□ -0.63
CLSTN3-204ENST00000535313 NAGKQ9UJ70 344 aa11.13□□□□□ -0.63
CLSTN3-204ENST00000535313 TNFSF18Q9UNG2 199 aa11.13□□□□□ -0.63
CLSTN3-204ENST00000535313 NXPH4O95158 308 aa11.12□□□□□ -0.63
CLSTN3-204ENST00000535313 FHL2Q14192 279 aa11.12□□□□□ -0.63
CLSTN3-204ENST00000535313 MRPL23Q16540 153 aaKnown RBP11.12□□□□□ -0.63
CLSTN3-204ENST00000535313 HSPG2P98160 4391 aa11.12□□□□□ -0.63
CLSTN3-204ENST00000535313 FXYD6-FXYD2A0A087WZ82 144 aa11.11□□□□□ -0.63
CLSTN3-204ENST00000535313 CDK2AP2O75956 126 aa11.11□□□□□ -0.63
CLSTN3-204ENST00000535313 RAB2AP61019 212 aa11.11□□□□□ -0.63
CLSTN3-204ENST00000535313 GOLT1AQ6ZVE7 132 aa11.11□□□□□ -0.63
CLSTN3-204ENST00000535313 ARL6IP6Q8N6S5 226 aa11.11□□□□□ -0.63
CLSTN3-204ENST00000535313 OR10G4Q8NGN3 311 aa11.11□□□□□ -0.63
CLSTN3-204ENST00000535313 OR10G9Q8NGN4 311 aa11.11□□□□□ -0.63
CLSTN3-204ENST00000535313 OR10G7Q8NGN6 311 aa11.11□□□□□ -0.63
CLSTN3-204ENST00000535313 RASL10AQ92737 203 aa11.11□□□□□ -0.63
CLSTN3-204ENST00000535313 LINC00315P59091 139 aa11.1□□□□□ -0.63
CLSTN3-204ENST00000535313 TDRG1Q3Y452 100 aa11.1□□□□□ -0.63
CLSTN3-204ENST00000535313 LYPD5Q6UWN5 251 aa11.1□□□□□ -0.63
CLSTN3-204ENST00000535313 NEGR1Q7Z3B1 354 aa11.1□□□□□ -0.63
CLSTN3-204ENST00000535313 IQCF2Q8IXL9 164 aa11.1□□□□□ -0.63
CLSTN3-204ENST00000535313 PCNPQ8WW12 178 aaKnown RBP11.1□□□□□ -0.63
CLSTN3-204ENST00000535313 TRAV21A0A0B4J279 112 aa11.09□□□□□ -0.63
CLSTN3-204ENST00000535313 HMGB3O15347 200 aaKnown RBP11.09□□□□□ -0.63
CLSTN3-204ENST00000535313 SFTA3P0C7M3 94 aa11.09□□□□□ -0.63
CLSTN3-204ENST00000535313 SRIP30626 198 aa11.09□□□□□ -0.63
CLSTN3-204ENST00000535313 ZNF479Q96JC4 524 aa11.09□□□□□ -0.63
CLSTN3-204ENST00000535313 TREM1Q9NP99 234 aa11.09□□□□□ -0.63
CLSTN3-204ENST00000535313 ABCA13Q86UQ4 5058 aa11.08□□□□□ -0.64
CLSTN3-204ENST00000535313 CDC34P49427 236 aaPredicted RBP11.08□□□□□ -0.64
CLSTN3-204ENST00000535313 TCTE3Q8IZS6 198 aa11.08□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms