RNA–Protein interactions for RNA: ENST00000530983.5

VPS28-213, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,337 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-213ENST00000530983 CLEC19AQ6UXS0 136 aa14.83□□□□□ -0.04
VPS28-213ENST00000530983 IGHV3OR16-13A0A075B7E8 117 aa14.82□□□□□ -0.04
VPS28-213ENST00000530983 IGHV3-74A0A0B4J1X5 117 aa14.82□□□□□ -0.04
VPS28-213ENST00000530983 SMAD7O15105 426 aaKnown RBP14.82□□□□□ -0.04
VPS28-213ENST00000530983 GOSR1O95249 250 aa14.82□□□□□ -0.04
VPS28-213ENST00000530983 NEGR1Q7Z3B1 354 aa14.82□□□□□ -0.04
VPS28-213ENST00000530983 OR2K2Q8NGT1 345 aa14.82□□□□□ -0.04
VPS28-213ENST00000530983 SLC50A1Q9BRV3 221 aa14.82□□□□□ -0.04
VPS28-213ENST00000530983 DKK2Q9UBU2 259 aa14.82□□□□□ -0.04
VPS28-213ENST00000530983 IGKV3D-20A0A0C4DH25 116 aa14.82□□□□□ -0.04
VPS28-213ENST00000530983 ADAMTSL5Q6ZMM2 481 aa14.82□□□□□ -0.04
VPS28-213ENST00000530983 RAB37Q96AX2 223 aa14.82□□□□□ -0.04
VPS28-213ENST00000530983 C18orf15Q96N68 181 aa14.82□□□□□ -0.04
VPS28-213ENST00000530983 C11orf21Q9P2W6 132 aa14.82□□□□□ -0.04
VPS28-213ENST00000530983 A1L4Q6 167 aa14.81□□□□□ -0.04
VPS28-213ENST00000530983 TNFRSF6BO95407 300 aa14.81□□□□□ -0.04
VPS28-213ENST00000530983 HSD52Q0P140 79 aa14.81□□□□□ -0.04
VPS28-213ENST00000530983 AGPAT4-IT1Q9H0P7 198 aa14.81□□□□□ -0.04
VPS28-213ENST00000530983 TRAV8-2A0A0B4J237 113 aa14.81□□□□□ -0.04
VPS28-213ENST00000530983 SIVA1O15304 175 aa14.81□□□□□ -0.04
VPS28-213ENST00000530983 EVI2AP22794 236 aa14.81□□□□□ -0.04
VPS28-213ENST00000530983 COL6A6A6NMZ7 2263 aa14.8□□□□□ -0.04
VPS28-213ENST00000530983 GATA1P15976 413 aaPredicted RBP14.8□□□□□ -0.04
VPS28-213ENST00000530983 OR9G4Q8NGQ1 327 aa14.8□□□□□ -0.04
VPS28-213ENST00000530983 LEPP41159 167 aa14.8□□□□□ -0.04
VPS28-213ENST00000530983 IGHV3-49A0A0A0MS15 119 aa14.79□□□□□ -0.04
VPS28-213ENST00000530983 PCP2Q8IVA1 136 aa14.79□□□□□ -0.04
VPS28-213ENST00000530983 NXT2Q9NPJ8 142 aaKnown RBP14.79□□□□□ -0.04
VPS28-213ENST00000530983 ZNF207O43670 478 aaKnown RBP14.78□□□□□ -0.04
VPS28-213ENST00000530983 FCER1GP30273 86 aa14.78□□□□□ -0.04
VPS28-213ENST00000530983 CENPVL3A0A0U1RRI6 287 aa14.78□□□□□ -0.04
VPS28-213ENST00000530983 A0A1W2PPM0 123 aa14.78□□□□□ -0.04
VPS28-213ENST00000530983 NMUP48645 174 aa14.78□□□□□ -0.04
VPS28-213ENST00000530983 EEF1AKMT3Q96AZ1 226 aa14.78□□□□□ -0.04
VPS28-213ENST00000530983 COL25A1Q9BXS0 654 aaPredicted RBP14.78□□□□□ -0.04
VPS28-213ENST00000530983 TRGV3P03979 118 aa14.77□□□□□ -0.04
VPS28-213ENST00000530983 C8orf86Q6ZUL3 223 aa14.77□□□□□ -0.04
VPS28-213ENST00000530983 HIVEP3Q5T1R4 2406 aa14.77□□□□□ -0.05
VPS28-213ENST00000530983 OR4X2Q8NGF9 303 aa14.77□□□□□ -0.05
VPS28-213ENST00000530983 SPCS1Q9Y6A9 102 aa14.77□□□□□ -0.05
VPS28-213ENST00000530983 LMO4P61968 165 aa14.76□□□□□ -0.05
VPS28-213ENST00000530983 ODF1Q14990 250 aa14.76□□□□□ -0.05
VPS28-213ENST00000530983 TMEM78Q5T7P6 136 aa14.76□□□□□ -0.05
VPS28-213ENST00000530983 METTL26Q96S19 204 aa14.76□□□□□ -0.05
VPS28-213ENST00000530983 ZMAT4Q9H898 229 aa14.76□□□□□ -0.05
VPS28-213ENST00000530983 UBTD1Q9HAC8 227 aa14.76□□□□□ -0.05
VPS28-213ENST00000530983 TRBV7-1A0A0A6YYK4 115 aa14.76□□□□□ -0.05
VPS28-213ENST00000530983 IGHV7-4-1A0A0J9YVY3 117 aa14.76□□□□□ -0.05
VPS28-213ENST00000530983 U3KQE9 123 aa14.76□□□□□ -0.05
VPS28-213ENST00000530983 IGLV2-18A0A075B6J9 118 aa14.75□□□□□ -0.05
VPS28-213ENST00000530983 EFNA4P52798 201 aa14.75□□□□□ -0.05
VPS28-213ENST00000530983 Q6ZQT7 251 aa14.75□□□□□ -0.05
VPS28-213ENST00000530983 C5orf56Q8N8D9 126 aa14.75□□□□□ -0.05
VPS28-213ENST00000530983 MRPL53Q96EL3 112 aaKnown RBP14.75□□□□□ -0.05
VPS28-213ENST00000530983 BPESC1Q9GZL8 116 aa14.75□□□□□ -0.05
VPS28-213ENST00000530983 NPFFO15130 113 aa14.75□□□□□ -0.05
VPS28-213ENST00000530983 OR5A1Q8NGJ0 315 aa14.75□□□□□ -0.05
VPS28-213ENST00000530983 PIFOQ8TCI5 191 aa14.75□□□□□ -0.05
VPS28-213ENST00000530983 HHLA3Q9XRX5 114 aa14.75□□□□□ -0.05
VPS28-213ENST00000530983 C9orf47Q6ZRZ4 202 aa14.74□□□□□ -0.05
VPS28-213ENST00000530983 Q8N8P6 123 aa14.74□□□□□ -0.05
VPS28-213ENST00000530983 TMEM158Q8WZ71 300 aa14.74□□□□□ -0.05
VPS28-213ENST00000530983 TM4SF20Q53R12 229 aa14.74□□□□□ -0.05
VPS28-213ENST00000530983 AKAP6Q13023 2319 aa14.73□□□□□ -0.05
VPS28-213ENST00000530983 IGKV2D-26A0A0A0MRZ7 120 aa14.73□□□□□ -0.05
VPS28-213ENST00000530983 PSMG4Q5JS54 123 aa14.73□□□□□ -0.05
VPS28-213ENST00000530983 PRSS1P07477 247 aa14.72□□□□□ -0.05
VPS28-213ENST00000530983 TMEM219Q86XT9 240 aa14.72□□□□□ -0.05
VPS28-213ENST00000530983 HIF1ANQ9NWT6 349 aa14.72□□□□□ -0.05
VPS28-213ENST00000530983 NRACQ8N912 160 aa14.72□□□□□ -0.05
VPS28-213ENST00000530983 CHTOPQ9Y3Y2 248 aaKnown RBP14.72□□□□□ -0.05
VPS28-213ENST00000530983 CELSR1Q9NYQ6 3014 aa14.72□□□□□ -0.05
VPS28-213ENST00000530983 TRAV26-2A0A0B4J265 109 aa14.71□□□□□ -0.05
VPS28-213ENST00000530983 SMIM17P0DL12 118 aa14.71□□□□□ -0.05
VPS28-213ENST00000530983 ATP5G2Q06055 141 aa14.71□□□□□ -0.05
VPS28-213ENST00000530983 VPS13CQ709C8 3753 aa14.71□□□□□ -0.05
VPS28-213ENST00000530983 FABP2P12104 132 aa14.71□□□□□ -0.05
VPS28-213ENST00000530983 PRR9Q5T870 116 aa14.7□□□□□ -0.06
VPS28-213ENST00000530983 SAMD5Q5TGI4 173 aa14.7□□□□□ -0.06
VPS28-213ENST00000530983 FOXC2Q99958 501 aa14.7□□□□□ -0.06
VPS28-213ENST00000530983 TTTY13Q9BZ97 58 aa14.7□□□□□ -0.06
VPS28-213ENST00000530983 LINC00527Q9UJ94 153 aa14.7□□□□□ -0.06
VPS28-213ENST00000530983 IGHV4-4A0A075B6R2 117 aa14.7□□□□□ -0.06
VPS28-213ENST00000530983 PRSS47A8MTI9 375 aa14.7□□□□□ -0.06
VPS28-213ENST00000530983 IGKCP01834 107 aa14.7□□□□□ -0.06
VPS28-213ENST00000530983 C19orf54Q5BKX5 351 aa14.7□□□□□ -0.06
VPS28-213ENST00000530983 UFC1Q9Y3C8 167 aa14.7□□□□□ -0.06
VPS28-213ENST00000530983 CIDEAO60543 219 aa14.69□□□□□ -0.06
VPS28-213ENST00000530983 ABCA2Q9BZC7 2435 aa14.69□□□□□ -0.06
VPS28-213ENST00000530983 TRAV41A0A0B4J266 112 aa14.69□□□□□ -0.06
VPS28-213ENST00000530983 SMIM13P0DJ93 91 aa14.69□□□□□ -0.06
VPS28-213ENST00000530983 FXYD2P54710 66 aa14.69□□□□□ -0.06
VPS28-213ENST00000530983 GLMPQ8WWB7 406 aa14.69□□□□□ -0.06
VPS28-213ENST00000530983 C16orf92Q96LL3 132 aa14.69□□□□□ -0.06
VPS28-213ENST00000530983 C20orf173Q96LM9 149 aa14.69□□□□□ -0.06
VPS28-213ENST00000530983 SPANXN1Q5VSR9 72 aa14.68□□□□□ -0.06
VPS28-213ENST00000530983 TEX48A0A1B0GUV7 120 aa14.67□□□□□ -0.06
VPS28-213ENST00000530983 ATP5LO75964 103 aa14.67□□□□□ -0.06
VPS28-213ENST00000530983 GCSHP23434 173 aa14.67□□□□□ -0.06
VPS28-213ENST00000530983 ITLN2Q8WWU7 325 aaPredicted RBP14.67□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 45.9 ms