RNA–Protein interactions for RNA: ENST00000529563.5

USH1C-208, Transcript of USH1 protein network component harmonin, humanhuman

TSL 2

Gene USH1C, Length 942 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-208ENST00000529563 LINC00477Q96M19 166 aa8.59□□□□□ -1.03
USH1C-208ENST00000529563 NKX6-2Q9C056 277 aaPredicted RBP8.59□□□□□ -1.03
USH1C-208ENST00000529563 TRAV12-2A0A075B6T6 113 aa8.58□□□□□ -1.04
USH1C-208ENST00000529563 IGKV2-40A0A087WW87 121 aaPredicted RBP8.58□□□□□ -1.04
USH1C-208ENST00000529563 C16orf90A8MZG2 172 aa8.58□□□□□ -1.04
USH1C-208ENST00000529563 PRAC2D3DTV9 90 aa8.58□□□□□ -1.04
USH1C-208ENST00000529563 F6UZH7 168 aa8.58□□□□□ -1.04
USH1C-208ENST00000529563 IGKV2D-40P01614 121 aaPredicted RBP8.58□□□□□ -1.04
USH1C-208ENST00000529563 ATP5G1P05496 136 aa8.58□□□□□ -1.04
USH1C-208ENST00000529563 CDKN1BP46527 198 aa8.58□□□□□ -1.04
USH1C-208ENST00000529563 ATP5G3P48201 142 aa8.58□□□□□ -1.04
USH1C-208ENST00000529563 PPT1P50897 306 aa8.58□□□□□ -1.04
USH1C-208ENST00000529563 NKX2-5P52952 324 aaPredicted RBP8.58□□□□□ -1.04
USH1C-208ENST00000529563 CCL18P55774 89 aa8.58□□□□□ -1.04
USH1C-208ENST00000529563 UBE2G2P60604 165 aa8.58□□□□□ -1.04
USH1C-208ENST00000529563 SUMO1P63165 101 aaKnown RBP8.58□□□□□ -1.04
USH1C-208ENST00000529563 CST9LP1Q5W188 147 aa8.58□□□□□ -1.04
USH1C-208ENST00000529563 NDFIP1Q9BT67 221 aa8.58□□□□□ -1.04
USH1C-208ENST00000529563 SERTM2A0A1B0GWG4 89 aa8.57□□□□□ -1.04
USH1C-208ENST00000529563 NPIPB6E9PJ23 425 aa8.57□□□□□ -1.04
USH1C-208ENST00000529563 PRM2P04554 102 aa8.57□□□□□ -1.04
USH1C-208ENST00000529563 GPX1P07203 203 aa8.57□□□□□ -1.04
USH1C-208ENST00000529563 ERCC8Q13216 396 aa8.57□□□□□ -1.04
USH1C-208ENST00000529563 AMTNQ6UX39 209 aa8.57□□□□□ -1.04
USH1C-208ENST00000529563 C5orf17Q8NAS9 161 aa8.57□□□□□ -1.04
USH1C-208ENST00000529563 PKHD1P08F94 4074 aa8.56□□□□□ -1.04
USH1C-208ENST00000529563 A0A1W2PRE2 83 aa8.56□□□□□ -1.04
USH1C-208ENST00000529563 RBAKDNA6NC62 111 aa8.56□□□□□ -1.04
USH1C-208ENST00000529563 DIRC3C9JPN6 131 aa8.56□□□□□ -1.04
USH1C-208ENST00000529563 IFNA1P01562 189 aa8.56□□□□□ -1.04
USH1C-208ENST00000529563 FHITP49789 147 aa8.56□□□□□ -1.04
USH1C-208ENST00000529563 ZNF138P52744 262 aa8.56□□□□□ -1.04
USH1C-208ENST00000529563 ZNF726P1Q15940 193 aa8.56□□□□□ -1.04
USH1C-208ENST00000529563 GOLT1AQ6ZVE7 132 aa8.56□□□□□ -1.04
USH1C-208ENST00000529563 SSX7Q7RTT5 188 aa8.56□□□□□ -1.04
USH1C-208ENST00000529563 CCDC28AQ8IWP9 274 aa8.56□□□□□ -1.04
USH1C-208ENST00000529563 TMEM256Q8N2U0 113 aa8.56□□□□□ -1.04
USH1C-208ENST00000529563 C6orf223Q8N319 242 aa8.56□□□□□ -1.04
USH1C-208ENST00000529563 ARL6IP6Q8N6S5 226 aa8.56□□□□□ -1.04
USH1C-208ENST00000529563 TMPRSS5Q9H3S3 457 aa8.56□□□□□ -1.04
USH1C-208ENST00000529563 DNAH17Q9UFH2 4485 aa8.55□□□□□ -1.04
USH1C-208ENST00000529563 MUC4Q99102 2169 aa8.55□□□□□ -1.04
USH1C-208ENST00000529563 NBDYA0A0U1RRE5 68 aa8.55□□□□□ -1.04
USH1C-208ENST00000529563 A8MTW9 85 aa8.55□□□□□ -1.04
USH1C-208ENST00000529563 SULT1A2P50226 295 aa8.55□□□□□ -1.04
USH1C-208ENST00000529563 TAS2R60P59551 318 aa8.55□□□□□ -1.04
USH1C-208ENST00000529563 C9orf47Q6ZRZ4 202 aa8.55□□□□□ -1.04
USH1C-208ENST00000529563 C16orf74Q96GX8 76 aa8.55□□□□□ -1.04
USH1C-208ENST00000529563 ODF3Q96PU9 254 aa8.55□□□□□ -1.04
USH1C-208ENST00000529563 AGPAT4-IT1Q9H0P7 198 aa8.55□□□□□ -1.04
USH1C-208ENST00000529563 TIMM8BQ9Y5J9 83 aaPredicted RBP8.55□□□□□ -1.04
USH1C-208ENST00000529563 FAT2Q9NYQ8 4349 aa8.55□□□□□ -1.04
USH1C-208ENST00000529563 DNAH2Q9P225 4427 aa8.55□□□□□ -1.04
USH1C-208ENST00000529563 FBLL1A6NHQ2 334 aaKnown RBP8.54□□□□□ -1.04
USH1C-208ENST00000529563 CBY3A6NI87 242 aa8.54□□□□□ -1.04
USH1C-208ENST00000529563 CRXO43186 299 aaPredicted RBP8.54□□□□□ -1.04
USH1C-208ENST00000529563 CT45A10P0DMU9 189 aa8.54□□□□□ -1.04
USH1C-208ENST00000529563 AZU1P20160 251 aa8.54□□□□□ -1.04
USH1C-208ENST00000529563 RNASE4P34096 147 aaKnown RBP8.54□□□□□ -1.04
USH1C-208ENST00000529563 UBE2G1P62253 170 aa8.54□□□□□ -1.04
USH1C-208ENST00000529563 GNG5P63218 68 aa8.54□□□□□ -1.04
USH1C-208ENST00000529563 BLOC1S1P78537 153 aa8.54□□□□□ -1.04
USH1C-208ENST00000529563 TNP2Q05952 138 aa8.54□□□□□ -1.04
USH1C-208ENST00000529563 OR5I1Q13606 314 aa8.54□□□□□ -1.04
USH1C-208ENST00000529563 ALKAL2Q6UX46 152 aa8.54□□□□□ -1.04
USH1C-208ENST00000529563 CYB561D1Q8N8Q1 229 aa8.54□□□□□ -1.04
USH1C-208ENST00000529563 MBD3L1Q8WWY6 194 aa8.54□□□□□ -1.04
USH1C-208ENST00000529563 VGLL1Q99990 258 aa8.54□□□□□ -1.04
USH1C-208ENST00000529563 C20orf144Q9BQM9 153 aa8.54□□□□□ -1.04
USH1C-208ENST00000529563 GNG13Q9P2W3 67 aa8.54□□□□□ -1.04
USH1C-208ENST00000529563 EPDR1Q9UM22 224 aa8.54□□□□□ -1.04
USH1C-208ENST00000529563 TRAV12-3A0A0B4J271 114 aa8.53□□□□□ -1.04
USH1C-208ENST00000529563 C7orf71A4D174 169 aa8.53□□□□□ -1.04
USH1C-208ENST00000529563 H7BYZ3 331 aa8.53□□□□□ -1.04
USH1C-208ENST00000529563 PAGE4O60829 102 aa8.53□□□□□ -1.04
USH1C-208ENST00000529563 Q8TAT8 98 aa8.53□□□□□ -1.04
USH1C-208ENST00000529563 HIST1H2BAQ96A08 127 aa8.53□□□□□ -1.04
USH1C-208ENST00000529563 NOP10Q9NPE3 64 aaKnown RBP8.53□□□□□ -1.04
USH1C-208ENST00000529563 MANBALQ9NQG1 85 aa8.53□□□□□ -1.04
USH1C-208ENST00000529563 ZNF492Q9P255 531 aa8.53□□□□□ -1.04
USH1C-208ENST00000529563 NACAE9PAV3 2078 aa8.53□□□□□ -1.04
USH1C-208ENST00000529563 FAM74A7A6NL05 159 aa8.52□□□□□ -1.05
USH1C-208ENST00000529563 RGS13O14921 159 aa8.52□□□□□ -1.05
USH1C-208ENST00000529563 TCRAP04437 139 aa8.52□□□□□ -1.05
USH1C-208ENST00000529563 NMBP08949 121 aa8.52□□□□□ -1.05
USH1C-208ENST00000529563 ZNF493Q6ZR52 646 aa8.52□□□□□ -1.05
USH1C-208ENST00000529563 PRNTQ86SH4 94 aa8.52□□□□□ -1.05
USH1C-208ENST00000529563 MAPKAPK5-AS1Q8N8E1 139 aa8.52□□□□□ -1.05
USH1C-208ENST00000529563 ZNRF2Q8NHG8 242 aa8.52□□□□□ -1.05
USH1C-208ENST00000529563 SUN5Q8TC36 379 aa8.52□□□□□ -1.05
USH1C-208ENST00000529563 TCEAL7Q9BRU2 100 aa8.52□□□□□ -1.05
USH1C-208ENST00000529563 TREM1Q9NP99 234 aa8.52□□□□□ -1.05
USH1C-208ENST00000529563 BOLA1Q9Y3E2 137 aa8.52□□□□□ -1.05
USH1C-208ENST00000529563 LENEPQ9Y5L5 61 aa8.52□□□□□ -1.05
USH1C-208ENST00000529563 ARL2-SNX15V9GYD0 113 aa8.52□□□□□ -1.05
USH1C-208ENST00000529563 SNURFLB1AK76 121 aa8.51□□□□□ -1.05
USH1C-208ENST00000529563 GGTLC3B5MD39 225 aa8.51□□□□□ -1.05
USH1C-208ENST00000529563 PEX7O00628 323 aa8.51□□□□□ -1.05
USH1C-208ENST00000529563 AKR1C3P42330 323 aa8.51□□□□□ -1.05
USH1C-208ENST00000529563 FLI1Q01543 452 aaPredicted RBP8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 33 ms