RNA–Protein interactions for RNA: ENST00000528672.1

CD44-229, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 4

Gene CD44, Length 586 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-229ENST00000528672 MPV17LQ2QL34 196 aa2.12□□□□□ -2.07
CD44-229ENST00000528672 LINC01554Q52M75 96 aa2.12□□□□□ -2.07
CD44-229ENST00000528672 DEFB132Q7Z7B7 95 aa2.12□□□□□ -2.07
CD44-229ENST00000528672 OR8B3Q8NGG8 313 aa2.12□□□□□ -2.07
CD44-229ENST00000528672 RNASE6Q93091 150 aaKnown RBP2.12□□□□□ -2.07
CD44-229ENST00000528672 DIRC1Q969H9 104 aa2.12□□□□□ -2.07
CD44-229ENST00000528672 FXYD6Q9H0Q3 95 aa2.12□□□□□ -2.07
CD44-229ENST00000528672 CYTL1Q9NRR1 136 aa2.12□□□□□ -2.07
CD44-229ENST00000528672 CELA1Q9UNI1 258 aa2.12□□□□□ -2.07
CD44-229ENST00000528672 LRP4O75096 1905 aa2.12□□□□□ -2.07
CD44-229ENST00000528672 KIF21BO75037 1637 aa2.12□□□□□ -2.07
CD44-229ENST00000528672 ATP7BP35670 1465 aa2.12□□□□□ -2.07
CD44-229ENST00000528672 WIZO95785 1651 aa2.12□□□□□ -2.07
CD44-229ENST00000528672 PPRC1Q5VV67 1664 aaKnown RBP2.12□□□□□ -2.07
CD44-229ENST00000528672 SCN1AP35498 2009 aa2.12□□□□□ -2.07
CD44-229ENST00000528672 FANCMQ8IYD8 2048 aa2.12□□□□□ -2.07
CD44-229ENST00000528672 ADGRB3O60242 1522 aa2.12□□□□□ -2.07
CD44-229ENST00000528672 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP2.12□□□□□ -2.07
CD44-229ENST00000528672 ANK1P16157 1881 aa2.11□□□□□ -2.07
CD44-229ENST00000528672 TCHHQ07283 1943 aa2.11□□□□□ -2.07
CD44-229ENST00000528672 RP1L1Q8IWN7 2480 aaPredicted RBP2.11□□□□□ -2.07
CD44-229ENST00000528672 UBR2Q8IWV8 1755 aa2.11□□□□□ -2.07
CD44-229ENST00000528672 CRB1P82279 1406 aa2.11□□□□□ -2.07
CD44-229ENST00000528672 C10orf71Q711Q0 1435 aa2.11□□□□□ -2.07
CD44-229ENST00000528672 ARHGAP21Q5T5U3 1957 aa2.11□□□□□ -2.07
CD44-229ENST00000528672 IGHV3-49A0A0A0MS15 119 aa2.11□□□□□ -2.07
CD44-229ENST00000528672 IGKV6-21A0A0C4DH24 114 aa2.11□□□□□ -2.07
CD44-229ENST00000528672 MDFIC2A0A1B0GVS7 189 aa2.11□□□□□ -2.07
CD44-229ENST00000528672 C9JCJ5 164 aa2.11□□□□□ -2.07
CD44-229ENST00000528672 ATOX1O00244 68 aa2.11□□□□□ -2.07
CD44-229ENST00000528672 ZNF324O75467 553 aaPredicted RBP2.11□□□□□ -2.07
CD44-229ENST00000528672 IGLV3-25P01717 112 aa2.11□□□□□ -2.07
CD44-229ENST00000528672 PRM2P04554 102 aa2.11□□□□□ -2.07
CD44-229ENST00000528672 SMIM13P0DJ93 91 aa2.11□□□□□ -2.07
CD44-229ENST00000528672 SCGB1C2P0DMR2 95 aa2.11□□□□□ -2.07
CD44-229ENST00000528672 MPV17P39210 176 aa2.11□□□□□ -2.07
CD44-229ENST00000528672 CCL8P80075 99 aa2.11□□□□□ -2.07
CD44-229ENST00000528672 IGFL3Q6UXB1 125 aa2.11□□□□□ -2.07
CD44-229ENST00000528672 C7orf65Q6ZTY9 151 aa2.11□□□□□ -2.07
CD44-229ENST00000528672 OR5AS1Q8N127 324 aa2.11□□□□□ -2.07
CD44-229ENST00000528672 SIGLECL1Q8N7X8 197 aa2.11□□□□□ -2.07
CD44-229ENST00000528672 SLC25A29Q8N8R3 303 aa2.11□□□□□ -2.07
CD44-229ENST00000528672 TVP23CQ96ET8 276 aa2.11□□□□□ -2.07
CD44-229ENST00000528672 LINC01600Q96MT4 127 aa2.11□□□□□ -2.07
CD44-229ENST00000528672 ODF3Q96PU9 254 aa2.11□□□□□ -2.07
CD44-229ENST00000528672 CHCHD7Q9BUK0 85 aa2.11□□□□□ -2.07
CD44-229ENST00000528672 SND1-IT1Q9HBX3 110 aa2.11□□□□□ -2.07
CD44-229ENST00000528672 EPDR1Q9UM22 224 aa2.11□□□□□ -2.07
CD44-229ENST00000528672 KMT2EQ8IZD2 1858 aa2.11□□□□□ -2.07
CD44-229ENST00000528672 TIAM1Q13009 1591 aa2.1□□□□□ -2.07
CD44-229ENST00000528672 DOCK4Q8N1I0 1966 aa2.1□□□□□ -2.07
CD44-229ENST00000528672 USP24Q9UPU5 2620 aa2.1□□□□□ -2.07
CD44-229ENST00000528672 EDC4Q6P2E9 1401 aaKnown RBP2.1□□□□□ -2.07
CD44-229ENST00000528672 KIF26AQ9ULI4 1882 aaPredicted RBP2.1□□□□□ -2.07
CD44-229ENST00000528672 COL1A1P02452 1464 aaPredicted RBP2.1□□□□□ -2.07
CD44-229ENST00000528672 PXDNQ92626 1479 aa2.1□□□□□ -2.07
CD44-229ENST00000528672 IGHV1-45A0A0A0MS14 117 aa2.1□□□□□ -2.07
CD44-229ENST00000528672 TRAV17A0A0B4J275 112 aa2.1□□□□□ -2.07
CD44-229ENST00000528672 TIMM17BO60830 172 aa2.1□□□□□ -2.07
CD44-229ENST00000528672 DNAH10OSP0CZ25 163 aa2.1□□□□□ -2.07
CD44-229ENST00000528672 FGF12P61328 243 aa2.1□□□□□ -2.07
CD44-229ENST00000528672 HIST1H4AP62805 103 aaKnown RBP2.1□□□□□ -2.07
CD44-229ENST00000528672 ZNF678Q5SXM1 525 aa2.1□□□□□ -2.07
CD44-229ENST00000528672 CFAP126Q5VTH2 177 aa2.1□□□□□ -2.07
CD44-229ENST00000528672 SMIM5Q71RC9 77 aa2.1□□□□□ -2.07
CD44-229ENST00000528672 SCXQ7RTU7 201 aa2.1□□□□□ -2.07
CD44-229ENST00000528672 C5orf38Q86SI9 138 aa2.1□□□□□ -2.07
CD44-229ENST00000528672 ORMDL3Q8N138 153 aa2.1□□□□□ -2.07
CD44-229ENST00000528672 Q8N8P6 123 aa2.1□□□□□ -2.07
CD44-229ENST00000528672 CLDND2Q8NHS1 167 aa2.1□□□□□ -2.07
CD44-229ENST00000528672 LINC01560Q8TB33 94 aa2.1□□□□□ -2.07
CD44-229ENST00000528672 CIRBP-AS1Q8TBR5 109 aa2.1□□□□□ -2.07
CD44-229ENST00000528672 TSKUQ8WUA8 353 aa2.1□□□□□ -2.07
CD44-229ENST00000528672 ITLN2Q8WWU7 325 aaPredicted RBP2.1□□□□□ -2.07
CD44-229ENST00000528672 OR8B2Q96RD0 313 aa2.1□□□□□ -2.07
CD44-229ENST00000528672 CXCL16Q9H2A7 254 aa2.1□□□□□ -2.07
CD44-229ENST00000528672 PRRC2AP48634 2157 aaKnown RBP2.1□□□□□ -2.07
CD44-229ENST00000528672 PPLO60437 1756 aa2.1□□□□□ -2.07
CD44-229ENST00000528672 SCN11AQ9UI33 1791 aa2.1□□□□□ -2.07
CD44-229ENST00000528672 CFAP74Q9C0B2 1584 aa2.1□□□□□ -2.07
CD44-229ENST00000528672 UGGT1Q9NYU2 1555 aa2.1□□□□□ -2.07
CD44-229ENST00000528672 SCN4AP35499 1836 aa2.1□□□□□ -2.07
CD44-229ENST00000528672 DYSFO75923 2080 aa2.1□□□□□ -2.07
CD44-229ENST00000528672 ABCA5Q8WWZ7 1642 aa2.09□□□□□ -2.07
CD44-229ENST00000528672 PTPN23Q9H3S7 1636 aa2.09□□□□□ -2.07
CD44-229ENST00000528672 ADAMTS7Q9UKP4 1686 aa2.09□□□□□ -2.07
CD44-229ENST00000528672 MON2Q7Z3U7 1717 aa2.09□□□□□ -2.07
CD44-229ENST00000528672 ABCC1P33527 1531 aa2.09□□□□□ -2.07
CD44-229ENST00000528672 TRAV14DV4A0A0A6YYC5 116 aa2.09□□□□□ -2.07
CD44-229ENST00000528672 TRAV16A0A0A6YYK6 109 aaPredicted RBP2.09□□□□□ -2.07
CD44-229ENST00000528672 TRAV2A0A0B4J234 112 aa2.09□□□□□ -2.07
CD44-229ENST00000528672 UBE2L5PA0A1B0GUS4 154 aa2.09□□□□□ -2.07
CD44-229ENST00000528672 A6NN06 94 aa2.09□□□□□ -2.07
CD44-229ENST00000528672 IBA57-AS1B1ANH7 110 aa2.09□□□□□ -2.07
CD44-229ENST00000528672 ZNF736B4DX44 427 aaPredicted RBP2.09□□□□□ -2.07
CD44-229ENST00000528672 IGKV1-16P04430 117 aa2.09□□□□□ -2.07
CD44-229ENST00000528672 C3orf79P0CE67 100 aa2.09□□□□□ -2.07
CD44-229ENST00000528672 CCL4P13236 92 aa2.09□□□□□ -2.07
CD44-229ENST00000528672 KRTDAPP60985 99 aa2.09□□□□□ -2.07
CD44-229ENST00000528672 UBE2G1P62253 170 aa2.09□□□□□ -2.07
Retrieved 100 of 20,778 RNA–protein pairs in 50.6 ms