RNA–Protein interactions for RNA: ENST00000527326.1

CD44-225, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 718 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-225ENST00000527326 CFC1BP0CG36 223 aa4.51□□□□□ -1.69
CD44-225ENST00000527326 CFC1P0CG37 223 aa4.51□□□□□ -1.69
CD44-225ENST00000527326 PYYP10082 97 aa4.51□□□□□ -1.69
CD44-225ENST00000527326 PRDX2P32119 198 aa4.51□□□□□ -1.69
CD44-225ENST00000527326 NXPH1P58417 271 aa4.51□□□□□ -1.69
CD44-225ENST00000527326 SFTA2Q6UW10 78 aa4.51□□□□□ -1.69
CD44-225ENST00000527326 LINC00336Q6ZUF6 198 aa4.51□□□□□ -1.69
CD44-225ENST00000527326 SERP2Q8N6R1 65 aa4.51□□□□□ -1.69
CD44-225ENST00000527326 TMEM75Q8N9X5 138 aa4.51□□□□□ -1.69
CD44-225ENST00000527326 COPS9Q8WXC6 57 aa4.51□□□□□ -1.69
CD44-225ENST00000527326 METTL26Q96S19 204 aa4.51□□□□□ -1.69
CD44-225ENST00000527326 SIRPDQ9H106 197 aa4.51□□□□□ -1.69
CD44-225ENST00000527326 ZDBF2Q9HCK1 2354 aa4.51□□□□□ -1.69
CD44-225ENST00000527326 BRWD1Q9NSI6 2320 aa4.5□□□□□ -1.69
CD44-225ENST00000527326 ZNF318Q5VUA4 2279 aa4.5□□□□□ -1.69
CD44-225ENST00000527326 TRAV12-2A0A075B6T6 113 aa4.5□□□□□ -1.69
CD44-225ENST00000527326 TRBV30A0A0K0K1B3 111 aa4.5□□□□□ -1.69
CD44-225ENST00000527326 LINC00473A8K010 186 aa4.5□□□□□ -1.69
CD44-225ENST00000527326 EPM2AB3EWF7 344 aa4.5□□□□□ -1.69
CD44-225ENST00000527326 EFNA2O43921 213 aa4.5□□□□□ -1.69
CD44-225ENST00000527326 FCGR3BO75015 233 aa4.5□□□□□ -1.69
CD44-225ENST00000527326 NGFP01138 241 aa4.5□□□□□ -1.69
CD44-225ENST00000527326 IGHV3-33P01772 117 aa4.5□□□□□ -1.69
CD44-225ENST00000527326 ELANEP08246 267 aa4.5□□□□□ -1.69
CD44-225ENST00000527326 ZNF32P17041 273 aa4.5□□□□□ -1.69
CD44-225ENST00000527326 SUB1P53999 127 aaKnown RBP eCLIP4.5□□□□□ -1.69
CD44-225ENST00000527326 FXYD7P58549 80 aa4.5□□□□□ -1.69
CD44-225ENST00000527326 NPC2P61916 151 aa4.5□□□□□ -1.69
CD44-225ENST00000527326 CEMP1Q6PRD7 247 aaPredicted RBP4.5□□□□□ -1.69
CD44-225ENST00000527326 NFAM1Q8NET5 270 aaPredicted RBP4.5□□□□□ -1.69
CD44-225ENST00000527326 TET1Q8NFU7 2136 aa4.5□□□□□ -1.69
CD44-225ENST00000527326 MBD3L2Q8NHZ7 208 aaPredicted RBP4.5□□□□□ -1.69
CD44-225ENST00000527326 DSCR8Q96T75 97 aa4.5□□□□□ -1.69
CD44-225ENST00000527326 FGF23Q9GZV9 251 aaPredicted RBP4.5□□□□□ -1.69
CD44-225ENST00000527326 DYNLRB1Q9NP97 96 aa4.5□□□□□ -1.69
CD44-225ENST00000527326 TMEM14BQ9NUH8 114 aa4.5□□□□□ -1.69
CD44-225ENST00000527326 SERP1Q9Y6X1 66 aa4.5□□□□□ -1.69
CD44-225ENST00000527326 DMDP11532 3685 aa4.5□□□□□ -1.69
CD44-225ENST00000527326 C12orf77C9JDV5 145 aa4.49□□□□□ -1.69
CD44-225ENST00000527326 NDUFA3O95167 84 aa4.49□□□□□ -1.69
CD44-225ENST00000527326 PLAUP00749 431 aa4.49□□□□□ -1.69
CD44-225ENST00000527326 IGHV3-30P01768 117 aa4.49□□□□□ -1.69
CD44-225ENST00000527326 IGHV3-30-5P0DP03 117 aa4.49□□□□□ -1.69
CD44-225ENST00000527326 COX6B1P14854 86 aa4.49□□□□□ -1.69
CD44-225ENST00000527326 CRIP2P52943 208 aaPredicted RBP4.49□□□□□ -1.69
CD44-225ENST00000527326 RPS21P63220 83 aaKnown RBP4.49□□□□□ -1.69
CD44-225ENST00000527326 PRCDQ00LT1 54 aa4.49□□□□□ -1.69
CD44-225ENST00000527326 RPL18AQ02543 176 aaKnown RBP4.49□□□□□ -1.69
CD44-225ENST00000527326 LAGE3Q14657 143 aa4.49□□□□□ -1.69
CD44-225ENST00000527326 PAPPA-AS1Q5QFB9 102 aa4.49□□□□□ -1.69
CD44-225ENST00000527326 LYZL1Q6UWQ5 148 aa4.49□□□□□ -1.69
CD44-225ENST00000527326 SDIM1Q6ZPB5 146 aa4.49□□□□□ -1.69
CD44-225ENST00000527326 Q6ZT83 130 aa4.49□□□□□ -1.69
CD44-225ENST00000527326 PRNTQ86SH4 94 aa4.49□□□□□ -1.69
CD44-225ENST00000527326 PLXDC1Q8IUK5 500 aa4.49□□□□□ -1.69
CD44-225ENST00000527326 APRG1Q8IVJ8 170 aa4.49□□□□□ -1.69
CD44-225ENST00000527326 EXOC3-AS1Q8N2X6 119 aa4.49□□□□□ -1.69
CD44-225ENST00000527326 TMEM263Q8WUH6 116 aaKnown RBP4.49□□□□□ -1.69
CD44-225ENST00000527326 S1PR3Q99500 378 aa4.49□□□□□ -1.69
CD44-225ENST00000527326 UPK3BQ9BT76 320 aa4.49□□□□□ -1.69
CD44-225ENST00000527326 KRTAP3-1Q9BYR8 98 aa4.49□□□□□ -1.69
CD44-225ENST00000527326 Q9H3A6 140 aa4.49□□□□□ -1.69
CD44-225ENST00000527326 DPH3P1Q9H4G8 78 aa4.49□□□□□ -1.69
CD44-225ENST00000527326 PEMTQ9UBM1 199 aa4.49□□□□□ -1.69
CD44-225ENST00000527326 CACNA1BQ00975 2339 aa4.49□□□□□ -1.69
CD44-225ENST00000527326 BAHCC1Q9P281 2608 aa4.48□□□□□ -1.69
CD44-225ENST00000527326 IGKV1OR2-108A0A075B7D4 117 aa4.48□□□□□ -1.69
CD44-225ENST00000527326 A0A0J9YY99 117 aa4.48□□□□□ -1.69
CD44-225ENST00000527326 FAM236DA0A1B0GTK5 79 aa4.48□□□□□ -1.69
CD44-225ENST00000527326 C17orf100A8MU93 164 aa4.48□□□□□ -1.69
CD44-225ENST00000527326 UPK2O00526 184 aa4.48□□□□□ -1.69
CD44-225ENST00000527326 FSTL3O95633 263 aa4.48□□□□□ -1.69
CD44-225ENST00000527326 FSHBP01225 129 aa4.48□□□□□ -1.69
CD44-225ENST00000527326 COX6CP09669 75 aa4.48□□□□□ -1.69
CD44-225ENST00000527326 FAM236CP0DP71 79 aa4.48□□□□□ -1.69
CD44-225ENST00000527326 MRPS36P82909 103 aaKnown RBP4.48□□□□□ -1.69
CD44-225ENST00000527326 TCF15Q12870 199 aa4.48□□□□□ -1.69
CD44-225ENST00000527326 FOXF2Q12947 444 aa4.48□□□□□ -1.69
CD44-225ENST00000527326 DEFB110Q30KQ9 67 aa4.48□□□□□ -1.69
CD44-225ENST00000527326 VMA21Q3ZAQ7 101 aa4.48□□□□□ -1.69
CD44-225ENST00000527326 MORN5Q5VZ52 161 aa4.48□□□□□ -1.69
CD44-225ENST00000527326 SLC25A29Q8N8R3 303 aa4.48□□□□□ -1.69
CD44-225ENST00000527326 THAP8Q8NA92 274 aa4.48□□□□□ -1.69
CD44-225ENST00000527326 TMEM14CQ9P0S9 112 aa4.48□□□□□ -1.69
CD44-225ENST00000527326 CCL26Q9Y258 94 aa4.48□□□□□ -1.69
CD44-225ENST00000527326 MYO15AQ9UKN7 3530 aa4.48□□□□□ -1.69
CD44-225ENST00000527326 CEP192Q8TEP8 1941 aa4.48□□□□□ -1.69
CD44-225ENST00000527326 SMIM26A0A096LP01 95 aa4.47□□□□□ -1.69
CD44-225ENST00000527326 A0A0U1RRA0 63 aa4.47□□□□□ -1.69
CD44-225ENST00000527326 H7C423 109 aa4.47□□□□□ -1.69
CD44-225ENST00000527326 CCL16O15467 120 aa4.47□□□□□ -1.69
CD44-225ENST00000527326 SPINT2O43291 252 aa4.47□□□□□ -1.69
CD44-225ENST00000527326 IGLV2-11P01706 119 aa4.47□□□□□ -1.69
CD44-225ENST00000527326 ZNF883P0CG24 379 aa4.47□□□□□ -1.69
CD44-225ENST00000527326 RNASE2P10153 161 aaKnown RBP4.47□□□□□ -1.69
CD44-225ENST00000527326 GP9P14770 177 aa4.47□□□□□ -1.69
CD44-225ENST00000527326 SYNJ2BPP57105 145 aa4.47□□□□□ -1.69
CD44-225ENST00000527326 PLGLAQ15195 96 aa4.47□□□□□ -1.69
CD44-225ENST00000527326 Q1RN00 199 aa4.47□□□□□ -1.69
CD44-225ENST00000527326 GUSBP11Q6P575 273 aa4.47□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 95.7 ms