RNA–Protein interactions for RNA: ENST00000524955.1

CHMP4A-202, Transcript of charged multivesicular body protein 4A, humanhuman

TSL 2

Gene CHMP4A, Length 268 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP4A-202ENST00000524955 NOP10Q9NPE3 64 aaKnown RBP3.3□□□□□ -1.88
CHMP4A-202ENST00000524955 GSN-AS1Q9NRJ2 163 aa3.3□□□□□ -1.88
CHMP4A-202ENST00000524955 C11orf21Q9P2W6 132 aa3.3□□□□□ -1.88
CHMP4A-202ENST00000524955 KLF12Q9Y4X4 402 aa3.3□□□□□ -1.88
CHMP4A-202ENST00000524955 TIMM8BQ9Y5J9 83 aaPredicted RBP3.3□□□□□ -1.88
CHMP4A-202ENST00000524955 ARL2-SNX15V9GYD0 113 aa3.3□□□□□ -1.88
CHMP4A-202ENST00000524955 COL7A1Q02388 2944 aa3.3□□□□□ -1.88
CHMP4A-202ENST00000524955 AGRNO00468 2067 aa3.29□□□□□ -1.88
CHMP4A-202ENST00000524955 TMSB15BA0A087X1C1 80 aa3.29□□□□□ -1.88
CHMP4A-202ENST00000524955 GAGE12BA1L429 117 aa3.29□□□□□ -1.88
CHMP4A-202ENST00000524955 PLAC8L1A1L4L8 177 aa3.29□□□□□ -1.88
CHMP4A-202ENST00000524955 PGPEP1LA6NFU8 196 aa3.29□□□□□ -1.88
CHMP4A-202ENST00000524955 KLLNB2CW77 178 aa3.29□□□□□ -1.88
CHMP4A-202ENST00000524955 K7EQM0 130 aa3.29□□□□□ -1.88
CHMP4A-202ENST00000524955 M0R036 132 aa3.29□□□□□ -1.88
CHMP4A-202ENST00000524955 RGS13O14921 159 aa3.29□□□□□ -1.88
CHMP4A-202ENST00000524955 GAGE7O76087 117 aa3.29□□□□□ -1.88
CHMP4A-202ENST00000524955 GCGP01275 180 aa3.29□□□□□ -1.88
CHMP4A-202ENST00000524955 GAGE12FP0CL80 117 aa3.29□□□□□ -1.88
CHMP4A-202ENST00000524955 GAGE12GP0CL81 117 aa3.29□□□□□ -1.88
CHMP4A-202ENST00000524955 GAGE12IP0CL82 117 aa3.29□□□□□ -1.88
CHMP4A-202ENST00000524955 BCL2P10415 239 aa3.29□□□□□ -1.88
CHMP4A-202ENST00000524955 CRISP2P16562 243 aa3.29□□□□□ -1.88
CHMP4A-202ENST00000524955 TAS2R60P59551 318 aa3.29□□□□□ -1.88
CHMP4A-202ENST00000524955 SRSF3P84103 164 aaKnown RBP3.29□□□□□ -1.88
CHMP4A-202ENST00000524955 C12orf74Q32Q52 190 aa3.29□□□□□ -1.88
CHMP4A-202ENST00000524955 ANXA2RQ3ZCQ2 193 aa3.29□□□□□ -1.88
CHMP4A-202ENST00000524955 TOR2AQ5JU69 321 aa3.29□□□□□ -1.88
CHMP4A-202ENST00000524955 PRR27Q6MZM9 219 aa3.29□□□□□ -1.88
CHMP4A-202ENST00000524955 TEX261Q6UWH6 196 aa3.29□□□□□ -1.88
CHMP4A-202ENST00000524955 Q6ZTC4 211 aa3.29□□□□□ -1.88
CHMP4A-202ENST00000524955 ZNF680Q8NEM1 530 aa3.29□□□□□ -1.88
CHMP4A-202ENST00000524955 ZC2HC1AQ96GY0 325 aa3.29□□□□□ -1.88
CHMP4A-202ENST00000524955 ODF3Q96PU9 254 aa3.29□□□□□ -1.88
CHMP4A-202ENST00000524955 NDFIP1Q9BT67 221 aa3.29□□□□□ -1.88
CHMP4A-202ENST00000524955 MANBALQ9NQG1 85 aa3.29□□□□□ -1.88
CHMP4A-202ENST00000524955 MRPL16Q9NX20 251 aaKnown RBP3.29□□□□□ -1.88
CHMP4A-202ENST00000524955 MDFICQ9P1T7 246 aa3.29□□□□□ -1.88
CHMP4A-202ENST00000524955 SORL1Q92673 2214 aa3.29□□□□□ -1.88
CHMP4A-202ENST00000524955 IGHV1OR15-1A0A075B7D0 117 aa3.28□□□□□ -1.88
CHMP4A-202ENST00000524955 TRAV1-1A0A0B4J248 108 aa3.28□□□□□ -1.88
CHMP4A-202ENST00000524955 GRIFINA4D1Z8 144 aa3.28□□□□□ -1.88
CHMP4A-202ENST00000524955 RBFOX3A6NFN3 312 aa3.28□□□□□ -1.88
CHMP4A-202ENST00000524955 H7BYZ3 331 aa3.28□□□□□ -1.88
CHMP4A-202ENST00000524955 SH2D1AO60880 128 aa3.28□□□□□ -1.88
CHMP4A-202ENST00000524955 IFNA1P01562 189 aa3.28□□□□□ -1.88
CHMP4A-202ENST00000524955 IGHV3-53P01767 116 aa3.28□□□□□ -1.88
CHMP4A-202ENST00000524955 CRIP1P50238 77 aa3.28□□□□□ -1.88
CHMP4A-202ENST00000524955 SSTP61278 116 aa3.28□□□□□ -1.88
CHMP4A-202ENST00000524955 BLOC1S1P78537 153 aa3.28□□□□□ -1.88
CHMP4A-202ENST00000524955 RPL19P84098 196 aaKnown RBP3.28□□□□□ -1.88
CHMP4A-202ENST00000524955 IFITM2Q01629 132 aa3.28□□□□□ -1.88
CHMP4A-202ENST00000524955 MEF2BQ02080 365 aaPredicted RBP3.28□□□□□ -1.88
CHMP4A-202ENST00000524955 TMEM183BQ1AE95 376 aa3.28□□□□□ -1.88
CHMP4A-202ENST00000524955 ZNF674Q2M3X9 581 aa3.28□□□□□ -1.88
CHMP4A-202ENST00000524955 SMUG1Q53HV7 270 aa3.28□□□□□ -1.88
CHMP4A-202ENST00000524955 CASC10Q5T4H9 136 aa3.28□□□□□ -1.88
CHMP4A-202ENST00000524955 FAM159AQ6UWV7 190 aa3.28□□□□□ -1.88
CHMP4A-202ENST00000524955 Q6ZTI0 123 aa3.28□□□□□ -1.88
CHMP4A-202ENST00000524955 BAGE2Q86Y30 109 aa3.28□□□□□ -1.88
CHMP4A-202ENST00000524955 TMEM183AQ8IXX5 376 aa3.28□□□□□ -1.88
CHMP4A-202ENST00000524955 EIF4E3Q8N5X7 224 aaKnown RBP3.28□□□□□ -1.88
CHMP4A-202ENST00000524955 RNASE8Q8TDE3 154 aaKnown RBP3.28□□□□□ -1.88
CHMP4A-202ENST00000524955 C2CD4CQ8TF44 421 aa3.28□□□□□ -1.88
CHMP4A-202ENST00000524955 PHLDA1Q8WV24 401 aaPredicted RBP3.28□□□□□ -1.88
CHMP4A-202ENST00000524955 HIST1H2BAQ96A08 127 aa3.28□□□□□ -1.88
CHMP4A-202ENST00000524955 NEU1Q99519 415 aa3.28□□□□□ -1.88
CHMP4A-202ENST00000524955 EIF5A2Q9GZV4 153 aaKnown RBP3.28□□□□□ -1.88
CHMP4A-202ENST00000524955 C11orf68Q9H3H3 251 aaKnown RBP3.28□□□□□ -1.88
CHMP4A-202ENST00000524955 MED9Q9NWA0 146 aa3.28□□□□□ -1.88
CHMP4A-202ENST00000524955 DKK2Q9UBU2 259 aa3.28□□□□□ -1.88
CHMP4A-202ENST00000524955 VAX2Q9UIW0 290 aa3.28□□□□□ -1.88
CHMP4A-202ENST00000524955 DNAH9Q9NYC9 4486 aa3.28□□□□□ -1.88
CHMP4A-202ENST00000524955 TGP01266 2768 aa3.28□□□□□ -1.89
CHMP4A-202ENST00000524955 NBEAL2Q6ZNJ1 2754 aa3.28□□□□□ -1.89
CHMP4A-202ENST00000524955 HUWE1Q7Z6Z7 4374 aaKnown RBP3.28□□□□□ -1.89
CHMP4A-202ENST00000524955 TRBV20OR9-2A0A075B6H5 130 aa3.27□□□□□ -1.89
CHMP4A-202ENST00000524955 TRGV1A0A0A0MS02 117 aa3.27□□□□□ -1.89
CHMP4A-202ENST00000524955 TRAV21A0A0B4J279 112 aa3.27□□□□□ -1.89
CHMP4A-202ENST00000524955 MUC21A0A0G2JKD1 596 aa3.27□□□□□ -1.89
CHMP4A-202ENST00000524955 MUC21A0A140T8X8 626 aa3.27□□□□□ -1.89
CHMP4A-202ENST00000524955 SERTM2A0A1B0GWG4 89 aa3.27□□□□□ -1.89
CHMP4A-202ENST00000524955 SMIM9A6NGZ8 99 aa3.27□□□□□ -1.89
CHMP4A-202ENST00000524955 SNURFLB1AK76 121 aa3.27□□□□□ -1.89
CHMP4A-202ENST00000524955 IGLL5B9A064 214 aa3.27□□□□□ -1.89
CHMP4A-202ENST00000524955 C9JCJ5 164 aa3.27□□□□□ -1.89
CHMP4A-202ENST00000524955 C9JQL5 133 aa3.27□□□□□ -1.89
CHMP4A-202ENST00000524955 LTAP01374 205 aa3.27□□□□□ -1.89
CHMP4A-202ENST00000524955 ORM1P02763 201 aa3.27□□□□□ -1.89
CHMP4A-202ENST00000524955 TYMSP04818 313 aa3.27□□□□□ -1.89
CHMP4A-202ENST00000524955 NMBP08949 121 aa3.27□□□□□ -1.89
CHMP4A-202ENST00000524955 SPART-AS1P0CW21 52 aa3.27□□□□□ -1.89
CHMP4A-202ENST00000524955 MGST1P10620 155 aaKnown RBP3.27□□□□□ -1.89
CHMP4A-202ENST00000524955 RPL35P42766 123 aaKnown RBP3.27□□□□□ -1.89
CHMP4A-202ENST00000524955 PPT1P50897 306 aa3.27□□□□□ -1.89
CHMP4A-202ENST00000524955 DAD1P61803 113 aa3.27□□□□□ -1.89
CHMP4A-202ENST00000524955 OR5I1Q13606 314 aa3.27□□□□□ -1.89
CHMP4A-202ENST00000524955 CENPWQ5EE01 88 aa3.27□□□□□ -1.89
CHMP4A-202ENST00000524955 Q6AWC8 147 aa3.27□□□□□ -1.89
CHMP4A-202ENST00000524955 TMEM256Q8N2U0 113 aa3.27□□□□□ -1.89
Retrieved 100 of 20,778 RNA–protein pairs in 39.8 ms