RNA–Protein interactions for RNA: ENST00000521713.1

USP42-207, Transcript of ubiquitin specific peptidase 42, humanhuman

TSL 5

Gene USP42, Length 5,017 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP42-207ENST00000521713 C11orf53Q8IXP5 236 aa12.89□□□□□ -0.35
USP42-207ENST00000521713 TMEM141Q96I45 108 aa12.89□□□□□ -0.35
USP42-207ENST00000521713 VGLL1Q99990 258 aa12.89□□□□□ -0.35
USP42-207ENST00000521713 TIMM21Q9BVV7 248 aa12.89□□□□□ -0.35
USP42-207ENST00000521713 CSTL1Q9H114 145 aa12.89□□□□□ -0.35
USP42-207ENST00000521713 H3BUA1 57 aa12.89□□□□□ -0.35
USP42-207ENST00000521713 LEPROTO15243 131 aa12.89□□□□□ -0.35
USP42-207ENST00000521713 TRAV8-3A0A0A6YYJ7 113 aa12.89□□□□□ -0.35
USP42-207ENST00000521713 POU2AF1Q16633 256 aa12.89□□□□□ -0.35
USP42-207ENST00000521713 Q71RC1 249 aaPredicted RBP12.89□□□□□ -0.35
USP42-207ENST00000521713 DEFB125Q8N687 156 aa12.89□□□□□ -0.35
USP42-207ENST00000521713 LY6G5BQ8NDX9 201 aa12.89□□□□□ -0.35
USP42-207ENST00000521713 Q8TAT8 98 aa12.89□□□□□ -0.35
USP42-207ENST00000521713 VPREB3Q9UKI3 123 aa12.89□□□□□ -0.35
USP42-207ENST00000521713 KIF26AQ9ULI4 1882 aaPredicted RBP12.89□□□□□ -0.35
USP42-207ENST00000521713 IGKV3D-20A0A0C4DH25 116 aa12.88□□□□□ -0.35
USP42-207ENST00000521713 ADARB2-AS1A8MUL3 147 aa12.88□□□□□ -0.35
USP42-207ENST00000521713 LINC00158P58513 81 aa12.88□□□□□ -0.35
USP42-207ENST00000521713 UBE2E2Q96LR5 201 aa12.88□□□□□ -0.35
USP42-207ENST00000521713 IGHV3-64A0A075B6Q5 118 aa12.88□□□□□ -0.35
USP42-207ENST00000521713 ZNF134P52741 427 aa12.88□□□□□ -0.35
USP42-207ENST00000521713 IGHV4-61A0A0C4DH41 118 aa12.88□□□□□ -0.35
USP42-207ENST00000521713 DENND4CQ5VZ89 1909 aa12.87□□□□□ -0.35
USP42-207ENST00000521713 GAGE12JA6NER3 117 aa12.87□□□□□ -0.35
USP42-207ENST00000521713 GAGE7O76087 117 aa12.87□□□□□ -0.35
USP42-207ENST00000521713 GAGE12FP0CL80 117 aa12.87□□□□□ -0.35
USP42-207ENST00000521713 GAGE12GP0CL81 117 aa12.87□□□□□ -0.35
USP42-207ENST00000521713 GAGE12IP0CL82 117 aa12.87□□□□□ -0.35
USP42-207ENST00000521713 FXYD7P58549 80 aa12.87□□□□□ -0.35
USP42-207ENST00000521713 GAGE4Q13068 117 aa12.87□□□□□ -0.35
USP42-207ENST00000521713 ZNF876PQ49A33 203 aa12.87□□□□□ -0.35
USP42-207ENST00000521713 WIPF2Q8TF74 440 aaPredicted RBP12.87□□□□□ -0.35
USP42-207ENST00000521713 GATD1Q8NB37 220 aa12.87□□□□□ -0.35
USP42-207ENST00000521713 LHBP01229 141 aa12.87□□□□□ -0.35
USP42-207ENST00000521713 SHANK1Q9Y566 2161 aa12.87□□□□□ -0.35
USP42-207ENST00000521713 DEFB112Q30KQ8 113 aa12.87□□□□□ -0.35
USP42-207ENST00000521713 CEND1Q8N111 149 aa12.87□□□□□ -0.35
USP42-207ENST00000521713 KLF5Q13887 457 aaPredicted RBP12.86□□□□□ -0.35
USP42-207ENST00000521713 SEM1Q6ZVN7 128 aa12.86□□□□□ -0.35
USP42-207ENST00000521713 HOXB4P17483 251 aaPredicted RBP12.86□□□□□ -0.35
USP42-207ENST00000521713 TCTEX1D4Q5JR98 221 aa12.86□□□□□ -0.35
USP42-207ENST00000521713 IGFL4Q6B9Z1 124 aa12.86□□□□□ -0.35
USP42-207ENST00000521713 GAGE2AQ6NT46 116 aa12.86□□□□□ -0.35
USP42-207ENST00000521713 C10orf105Q8TEF2 133 aa12.86□□□□□ -0.35
USP42-207ENST00000521713 WT1-ASQ06250 92 aa12.85□□□□□ -0.35
USP42-207ENST00000521713 KRTAP27-1Q3LI81 207 aa12.85□□□□□ -0.35
USP42-207ENST00000521713 IGHV4-30-2A0A087WSY4 118 aa12.85□□□□□ -0.35
USP42-207ENST00000521713 VWC2LB2RUY7 222 aa12.85□□□□□ -0.35
USP42-207ENST00000521713 GAGE5Q13069 117 aa12.85□□□□□ -0.35
USP42-207ENST00000521713 GAGE6Q13070 117 aa12.85□□□□□ -0.35
USP42-207ENST00000521713 Q8NA96 180 aa12.85□□□□□ -0.35
USP42-207ENST00000521713 LSM4Q9Y4Z0 139 aaKnown RBP12.85□□□□□ -0.35
USP42-207ENST00000521713 IGKV1-39P01597 117 aa12.85□□□□□ -0.35
USP42-207ENST00000521713 IGKV1D-39P04432 117 aa12.85□□□□□ -0.35
USP42-207ENST00000521713 CYYR1Q96J86 154 aa12.85□□□□□ -0.35
USP42-207ENST00000521713 LINC00479Q96M42 142 aa12.85□□□□□ -0.35
USP42-207ENST00000521713 IL17RELQ6ZVW7 336 aa12.84□□□□□ -0.35
USP42-207ENST00000521713 SMKR1H3BMG3 65 aa12.84□□□□□ -0.35
USP42-207ENST00000521713 PRORYQ9H606 182 aa12.84□□□□□ -0.35
USP42-207ENST00000521713 Q6ZSR3 168 aa12.84□□□□□ -0.35
USP42-207ENST00000521713 ARFGEF3Q5TH69 2177 aa12.83□□□□□ -0.35
USP42-207ENST00000521713 PAX4O43316 350 aa12.83□□□□□ -0.35
USP42-207ENST00000521713 PRB4P10163 310 aaPredicted RBP12.83□□□□□ -0.36
USP42-207ENST00000521713 DIAPH2-AS1Q14236 149 aa12.83□□□□□ -0.36
USP42-207ENST00000521713 TPSG1Q9NRR2 321 aa12.83□□□□□ -0.36
USP42-207ENST00000521713 PRO1854Q9UHT4 67 aa12.83□□□□□ -0.36
USP42-207ENST00000521713 IGHV4-59P01825 116 aa12.83□□□□□ -0.36
USP42-207ENST00000521713 JPT2Q9H910 190 aa12.83□□□□□ -0.36
USP42-207ENST00000521713 SOCS3O14543 225 aa12.82□□□□□ -0.36
USP42-207ENST00000521713 PMVKQ15126 192 aa12.82□□□□□ -0.36
USP42-207ENST00000521713 A0A0U1RRA0 63 aa12.82□□□□□ -0.36
USP42-207ENST00000521713 CCL25O15444 150 aa12.82□□□□□ -0.36
USP42-207ENST00000521713 C2orf66Q6UXQ4 117 aa12.82□□□□□ -0.36
USP42-207ENST00000521713 C14orf178Q8N769 122 aaPredicted RBP12.82□□□□□ -0.36
USP42-207ENST00000521713 HLA-DMBP28068 263 aa12.82□□□□□ -0.36
USP42-207ENST00000521713 FAM120AOSQ5T036 256 aa12.82□□□□□ -0.36
USP42-207ENST00000521713 TMEM14CQ9P0S9 112 aa12.82□□□□□ -0.36
USP42-207ENST00000521713 TRBV19A0A075B6N1 114 aa12.81□□□□□ -0.36
USP42-207ENST00000521713 CENPVL3A0A0U1RRI6 287 aa12.81□□□□□ -0.36
USP42-207ENST00000521713 RHODO00212 210 aa12.81□□□□□ -0.36
USP42-207ENST00000521713 IGHV3-53P01767 116 aa12.81□□□□□ -0.36
USP42-207ENST00000521713 TRACP01848 142 aa12.81□□□□□ -0.36
USP42-207ENST00000521713 TRPT1Q86TN4 253 aaKnown RBP12.81□□□□□ -0.36
USP42-207ENST00000521713 LAMTOR3Q9UHA4 124 aa12.81□□□□□ -0.36
USP42-207ENST00000521713 F8VRH5 84 aa12.81□□□□□ -0.36
USP42-207ENST00000521713 HLA-DRB4P13762 266 aa12.81□□□□□ -0.36
USP42-207ENST00000521713 PRR31Q5SQ13 230 aa12.81□□□□□ -0.36
USP42-207ENST00000521713 HLA-DRB4X5D2U9 266 aa12.81□□□□□ -0.36
USP42-207ENST00000521713 APOC4P55056 127 aa12.81□□□□□ -0.36
USP42-207ENST00000521713 ZNF114Q8NC26 417 aa12.81□□□□□ -0.36
USP42-207ENST00000521713 XCL2Q9UBD3 114 aa12.8□□□□□ -0.36
USP42-207ENST00000521713 DEFB130BP0DP73 79 aa12.8□□□□□ -0.36
USP42-207ENST00000521713 DEFB130AP0DP74 79 aa12.8□□□□□ -0.36
USP42-207ENST00000521713 MRPL51Q4U2R6 128 aaKnown RBP12.8□□□□□ -0.36
USP42-207ENST00000521713 IGHV3-73A0A0B4J1V6 119 aa12.8□□□□□ -0.36
USP42-207ENST00000521713 TMEM213A2RRL7 107 aa12.8□□□□□ -0.36
USP42-207ENST00000521713 MED13Q9UHV7 2174 aa12.79□□□□□ -0.36
USP42-207ENST00000521713 NPC2P61916 151 aa12.79□□□□□ -0.36
USP42-207ENST00000521713 ERCC8Q13216 396 aa12.79□□□□□ -0.36
USP42-207ENST00000521713 SIGLEC8Q9NYZ4 499 aa12.79□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms