RNA–Protein interactions for RNA: ENST00000514307.5

NUP54-214, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 566 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-214ENST00000514307 ZNF705DP0CH99 300 aaPredicted RBP11.96□□□□□ -0.49
NUP54-214ENST00000514307 ZNF705BP0CI00 300 aaPredicted RBP11.96□□□□□ -0.49
NUP54-214ENST00000514307 PRB4P10163 310 aaPredicted RBP11.96□□□□□ -0.49
NUP54-214ENST00000514307 CRIP1P50238 77 aa11.96□□□□□ -0.49
NUP54-214ENST00000514307 DEFB131AP59861 70 aa11.96□□□□□ -0.49
NUP54-214ENST00000514307 KRTAP24-1Q3LI83 254 aa11.96□□□□□ -0.49
NUP54-214ENST00000514307 NAT8BQ9UHF3 227 aa11.96□□□□□ -0.49
NUP54-214ENST00000514307 TGIF2-C20orf24A0A0A6YYL0 155 aa11.95□□□□□ -0.5
NUP54-214ENST00000514307 A0A1W2PPQ1 181 aa11.95□□□□□ -0.5
NUP54-214ENST00000514307 SH2D1AO60880 128 aa11.95□□□□□ -0.5
NUP54-214ENST00000514307 CRISP2P16562 243 aa11.95□□□□□ -0.5
NUP54-214ENST00000514307 COX19Q49B96 90 aa11.95□□□□□ -0.5
NUP54-214ENST00000514307 C9orf66Q5T8R8 295 aa11.95□□□□□ -0.5
NUP54-214ENST00000514307 SHISA2Q6UWI4 295 aa11.95□□□□□ -0.5
NUP54-214ENST00000514307 C12orf54Q6X4T0 127 aa11.95□□□□□ -0.5
NUP54-214ENST00000514307 LINC00322Q6ZN03 302 aaPredicted RBP11.95□□□□□ -0.5
NUP54-214ENST00000514307 GPR61Q9BZJ8 451 aa11.95□□□□□ -0.5
NUP54-214ENST00000514307 TRAV21A0A0B4J279 112 aa11.94□□□□□ -0.5
NUP54-214ENST00000514307 IZUMO1RA6ND01 250 aa11.94□□□□□ -0.5
NUP54-214ENST00000514307 F6UB75 175 aa11.94□□□□□ -0.5
NUP54-214ENST00000514307 ORM1P02763 201 aa11.94□□□□□ -0.5
NUP54-214ENST00000514307 RPS10P46783 165 aaKnown RBP11.94□□□□□ -0.5
NUP54-214ENST00000514307 FAM19A4Q96LR4 140 aa11.94□□□□□ -0.5
NUP54-214ENST00000514307 ZNF256Q9Y2P7 627 aaPredicted RBP11.94□□□□□ -0.5
NUP54-214ENST00000514307 FOXA3P55318 350 aaPredicted RBP11.93□□□□□ -0.5
NUP54-214ENST00000514307 Q6AWC8 147 aa11.93□□□□□ -0.5
NUP54-214ENST00000514307 FAM110AQ9BQ89 295 aa11.93□□□□□ -0.5
NUP54-214ENST00000514307 SRD5A3Q9H8P0 318 aa11.93□□□□□ -0.5
NUP54-214ENST00000514307 C1orf196B1AJZ1 125 aa11.92□□□□□ -0.5
NUP54-214ENST00000514307 OR11H12B2RN74 326 aa11.92□□□□□ -0.5
NUP54-214ENST00000514307 TYMSP04818 313 aa11.92□□□□□ -0.5
NUP54-214ENST00000514307 CXCL1P09341 107 aa11.92□□□□□ -0.5
NUP54-214ENST00000514307 CD33P20138 364 aa11.92□□□□□ -0.5
NUP54-214ENST00000514307 RNASE4P34096 147 aaKnown RBP11.92□□□□□ -0.5
NUP54-214ENST00000514307 WFDC9Q8NEX5 89 aa11.92□□□□□ -0.5
NUP54-214ENST00000514307 BORCS7Q96B45 105 aa11.92□□□□□ -0.5
NUP54-214ENST00000514307 CLUHP3Q96NS8 147 aa11.92□□□□□ -0.5
NUP54-214ENST00000514307 MAP6D1Q9H9H5 199 aa11.92□□□□□ -0.5
NUP54-214ENST00000514307 HLA-DRB4P13762 266 aa11.91□□□□□ -0.5
NUP54-214ENST00000514307 ZNF80P51504 273 aaPredicted RBP11.91□□□□□ -0.5
NUP54-214ENST00000514307 ACTL10Q5JWF8 245 aa11.91□□□□□ -0.5
NUP54-214ENST00000514307 RASL11AQ6T310 242 aa11.91□□□□□ -0.5
NUP54-214ENST00000514307 APRG1Q8IVJ8 170 aa11.91□□□□□ -0.5
NUP54-214ENST00000514307 ZFAND2AQ8N6M9 145 aa11.91□□□□□ -0.5
NUP54-214ENST00000514307 HLA-DRB4X5D2U9 266 aa11.91□□□□□ -0.5
NUP54-214ENST00000514307 HIGD1CA8MV81 97 aa11.9□□□□□ -0.5
NUP54-214ENST00000514307 H3BMM0 161 aa11.9□□□□□ -0.5
NUP54-214ENST00000514307 CA1P00915 261 aaPredicted RBP11.9□□□□□ -0.5
NUP54-214ENST00000514307 TCL1AP56279 114 aa11.9□□□□□ -0.5
NUP54-214ENST00000514307 DEFB1P60022 68 aa11.9□□□□□ -0.5
NUP54-214ENST00000514307 BEAN1Q3B7T3 259 aa11.9□□□□□ -0.5
NUP54-214ENST00000514307 WDR73Q6P4I2 378 aa11.9□□□□□ -0.5
NUP54-214ENST00000514307 NUP35Q8NFH5 326 aa11.9□□□□□ -0.5
NUP54-214ENST00000514307 NEU1Q99519 415 aa11.9□□□□□ -0.5
NUP54-214ENST00000514307 KNCNA6PVL3 124 aa11.89□□□□□ -0.51
NUP54-214ENST00000514307 F2Z2F3 143 aa11.89□□□□□ -0.51
NUP54-214ENST00000514307 AMBPP02760 352 aa11.89□□□□□ -0.51
NUP54-214ENST00000514307 S100A8P05109 93 aa11.89□□□□□ -0.51
NUP54-214ENST00000514307 CDKN1BP46527 198 aa11.89□□□□□ -0.51
NUP54-214ENST00000514307 KRTAP21-3Q3LHN1 58 aa11.89□□□□□ -0.51
NUP54-214ENST00000514307 LINC01559Q495D7 138 aa11.89□□□□□ -0.51
NUP54-214ENST00000514307 GDF5OSQ5U4N7 250 aa11.89□□□□□ -0.51
NUP54-214ENST00000514307 ATP5L2Q7Z4Y8 100 aa11.89□□□□□ -0.51
NUP54-214ENST00000514307 KCNS1Q96KK3 526 aa11.89□□□□□ -0.51
NUP54-214ENST00000514307 MDFIQ99750 246 aa11.89□□□□□ -0.51
NUP54-214ENST00000514307 A0A1B0GW15 77 aa11.88□□□□□ -0.51
NUP54-214ENST00000514307 KLLNB2CW77 178 aa11.88□□□□□ -0.51
NUP54-214ENST00000514307 IGKV3-20P01619 116 aa11.88□□□□□ -0.51
NUP54-214ENST00000514307 RAB5BP61020 215 aa11.88□□□□□ -0.51
NUP54-214ENST00000514307 NUTF2P61970 127 aaKnown RBP11.88□□□□□ -0.51
NUP54-214ENST00000514307 RIGQ13278 110 aa11.88□□□□□ -0.51
NUP54-214ENST00000514307 STHQ8IWL8 128 aa11.88□□□□□ -0.51
NUP54-214ENST00000514307 PGLYRP4Q96LB8 373 aa11.88□□□□□ -0.51
NUP54-214ENST00000514307 GNB1LQ9BYB4 327 aa11.88□□□□□ -0.51
NUP54-214ENST00000514307 C7orf71A4D174 169 aa11.87□□□□□ -0.51
NUP54-214ENST00000514307 A8MTW9 85 aa11.87□□□□□ -0.51
NUP54-214ENST00000514307 TMSB15BA0A087X1C1 80 aa11.86□□□□□ -0.51
NUP54-214ENST00000514307 A0A1B0GUT8 65 aa11.86□□□□□ -0.51
NUP54-214ENST00000514307 J3KRW8 73 aa11.86□□□□□ -0.51
NUP54-214ENST00000514307 MT-ND6P03923 174 aa11.86□□□□□ -0.51
NUP54-214ENST00000514307 FAM159AQ6UWV7 190 aa11.86□□□□□ -0.51
NUP54-214ENST00000514307 GTSF1Q8WW33 167 aa11.86□□□□□ -0.51
NUP54-214ENST00000514307 ZMAT5Q9UDW3 170 aaKnown RBP11.86□□□□□ -0.51
NUP54-214ENST00000514307 TMA7Q9Y2S6 64 aaKnown RBP11.86□□□□□ -0.51
NUP54-214ENST00000514307 TRAPPC1Q9Y5R8 145 aa11.86□□□□□ -0.51
NUP54-214ENST00000514307 ATRQ13535 2644 aa11.86□□□□□ -0.51
NUP54-214ENST00000514307 SPINK4O60575 86 aa11.85□□□□□ -0.51
NUP54-214ENST00000514307 ODF3L2Q3SX64 289 aa11.85□□□□□ -0.51
NUP54-214ENST00000514307 AMTNQ6UX39 209 aa11.85□□□□□ -0.51
NUP54-214ENST00000514307 GTSCR1Q86UQ5 136 aa11.85□□□□□ -0.51
NUP54-214ENST00000514307 FER1L6-AS1Q8NA97 138 aa11.85□□□□□ -0.51
NUP54-214ENST00000514307 TRAV12-3A0A0B4J271 114 aa11.84□□□□□ -0.51
NUP54-214ENST00000514307 GZMBP10144 247 aa11.84□□□□□ -0.51
NUP54-214ENST00000514307 RAB4BP61018 213 aa11.84□□□□□ -0.51
NUP54-214ENST00000514307 MRPL54Q6P161 138 aaKnown RBP11.84□□□□□ -0.51
NUP54-214ENST00000514307 C20orf144Q9BQM9 153 aa11.84□□□□□ -0.51
NUP54-214ENST00000514307 IGKV3D-20A0A0C4DH25 116 aa11.83□□□□□ -0.52
NUP54-214ENST00000514307 GRIFINA4D1Z8 144 aa11.83□□□□□ -0.52
NUP54-214ENST00000514307 ZNF324O75467 553 aaPredicted RBP11.83□□□□□ -0.52
NUP54-214ENST00000514307 TRGC2P03986 189 aa11.83□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms