RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 EDF1O60869 148 aaKnown RBP0.59□□□□□ -2.31
HMGB1P28-201ENST00000507778 SLC25A4P12235 298 aa0.59□□□□□ -2.31
HMGB1P28-201ENST00000507778 ETV6P41212 452 aa0.59□□□□□ -2.31
HMGB1P28-201ENST00000507778 BLCAPP62952 87 aa0.59□□□□□ -2.31
HMGB1P28-201ENST00000507778 XAF1Q6GPH4 301 aa0.59□□□□□ -2.31
HMGB1P28-201ENST00000507778 BRK1Q8WUW1 75 aa0.59□□□□□ -2.31
HMGB1P28-201ENST00000507778 NAT14Q8WUY8 206 aa0.59□□□□□ -2.31
HMGB1P28-201ENST00000507778 PLAC4Q8WY50 150 aa0.59□□□□□ -2.31
HMGB1P28-201ENST00000507778 JPT1Q9UK76 154 aa0.59□□□□□ -2.31
HMGB1P28-201ENST00000507778 ZGRF1Q86YA3 2104 aa0.59□□□□□ -2.32
HMGB1P28-201ENST00000507778 DSPPQ9NZW4 1301 aa0.59□□□□□ -2.32
HMGB1P28-201ENST00000507778 KDELR1P24390 212 aa0.58□□□□□ -2.32
HMGB1P28-201ENST00000507778 RPL22P35268 128 aaKnown RBP0.58□□□□□ -2.32
HMGB1P28-201ENST00000507778 GTF2A1P52655 376 aaPredicted RBP0.58□□□□□ -2.32
HMGB1P28-201ENST00000507778 QRFPP83859 136 aa0.58□□□□□ -2.32
HMGB1P28-201ENST00000507778 TMEM35BQ8NCS4 154 aa0.58□□□□□ -2.32
HMGB1P28-201ENST00000507778 OR8J3Q8NGG0 315 aa0.58□□□□□ -2.32
HMGB1P28-201ENST00000507778 OR5A2Q8NGI9 324 aa0.58□□□□□ -2.32
HMGB1P28-201ENST00000507778 SKA2Q8WVK7 121 aaPredicted RBP0.58□□□□□ -2.32
HMGB1P28-201ENST00000507778 C19orf12Q9NSK7 152 aa0.58□□□□□ -2.32
HMGB1P28-201ENST00000507778 AHNAK2Q8IVF2 5795 aa0.58□□□□□ -2.32
HMGB1P28-201ENST00000507778 MUC5BQ9HC84 5762 aaPredicted RBP0.58□□□□□ -2.32
HMGB1P28-201ENST00000507778 MYH3P11055 1940 aa0.58□□□□□ -2.32
HMGB1P28-201ENST00000507778 ZNF462Q96JM2 2506 aa0.58□□□□□ -2.32
HMGB1P28-201ENST00000507778 AHNAKQ09666 5890 aaKnown RBP0.58□□□□□ -2.32
HMGB1P28-201ENST00000507778 PRORSD1PA6NEY8 169 aa0.57□□□□□ -2.32
HMGB1P28-201ENST00000507778 HBDP02042 147 aa0.57□□□□□ -2.32
HMGB1P28-201ENST00000507778 SMIM7Q9BQ49 75 aa0.57□□□□□ -2.32
HMGB1P28-201ENST00000507778 TMEM189A5PLL7 270 aa0.56□□□□□ -2.32
HMGB1P28-201ENST00000507778 TSTD3H0UI37 97 aa0.56□□□□□ -2.32
HMGB1P28-201ENST00000507778 EVI2AP22794 236 aa0.56□□□□□ -2.32
HMGB1P28-201ENST00000507778 SPINK7P58062 85 aa0.56□□□□□ -2.32
HMGB1P28-201ENST00000507778 C10orf99Q6UWK7 81 aa0.56□□□□□ -2.32
HMGB1P28-201ENST00000507778 MRPL35Q9NZE8 188 aaKnown RBP0.56□□□□□ -2.32
HMGB1P28-201ENST00000507778 NDUFAF1Q9Y375 327 aa0.56□□□□□ -2.32
HMGB1P28-201ENST00000507778 USP54Q70EL1 1684 aa0.56□□□□□ -2.32
HMGB1P28-201ENST00000507778 ZDBF2Q9HCK1 2354 aa0.55□□□□□ -2.32
HMGB1P28-201ENST00000507778 CDC42EP2O14613 210 aa0.55□□□□□ -2.32
HMGB1P28-201ENST00000507778 UQCRQO14949 82 aa0.55□□□□□ -2.32
HMGB1P28-201ENST00000507778 IGF2P01344 180 aa0.55□□□□□ -2.32
HMGB1P28-201ENST00000507778 PLAC8Q9NZF1 115 aa0.55□□□□□ -2.32
HMGB1P28-201ENST00000507778 MRPL36Q9P0J6 103 aaKnown RBP0.55□□□□□ -2.32
HMGB1P28-201ENST00000507778 MUC4Q99102 2169 aa0.55□□□□□ -2.32
HMGB1P28-201ENST00000507778 TMEM30CPA0ZSE6 113 aa0.54□□□□□ -2.32
HMGB1P28-201ENST00000507778 H0YJX3 145 aa0.54□□□□□ -2.32
HMGB1P28-201ENST00000507778 J3KT08 172 aa0.54□□□□□ -2.32
HMGB1P28-201ENST00000507778 CKS2P33552 79 aa0.54□□□□□ -2.32
HMGB1P28-201ENST00000507778 GLYATL3Q5SZD4 288 aa0.54□□□□□ -2.32
HMGB1P28-201ENST00000507778 OTOSQ8NHW6 89 aa0.54□□□□□ -2.32
HMGB1P28-201ENST00000507778 COMMD3Q9UBI1 195 aa0.54□□□□□ -2.32
HMGB1P28-201ENST00000507778 MED23Q9ULK4 1368 aa0.54□□□□□ -2.32
HMGB1P28-201ENST00000507778 MACF1Q9UPN3 7388 aaKnown RBP0.53□□□□□ -2.32
HMGB1P28-201ENST00000507778 IGHV1-24A0A0C4DH33 117 aa0.53□□□□□ -2.32
HMGB1P28-201ENST00000507778 TPST1O60507 370 aa0.53□□□□□ -2.32
HMGB1P28-201ENST00000507778 PRH1P02810 166 aa0.53□□□□□ -2.32
HMGB1P28-201ENST00000507778 FXYD3Q14802 87 aa0.53□□□□□ -2.32
HMGB1P28-201ENST00000507778 ASB16-AS1Q495Z4 193 aa0.53□□□□□ -2.32
HMGB1P28-201ENST00000507778 IDO2Q6ZQW0 420 aa0.53□□□□□ -2.32
HMGB1P28-201ENST00000507778 FAM103A1Q9BTL3 118 aaKnown RBP0.53□□□□□ -2.32
HMGB1P28-201ENST00000507778 OVOS2A0A0G2JMS6 1433 aa0.53□□□□□ -2.32
HMGB1P28-201ENST00000507778 SPTBP11277 2137 aa0.52□□□□□ -2.33
HMGB1P28-201ENST00000507778 PNMA8CA0A1B0GUJ8 204 aa0.52□□□□□ -2.33
HMGB1P28-201ENST00000507778 GNG14A0A1W2PPG7 69 aa0.52□□□□□ -2.33
HMGB1P28-201ENST00000507778 HIGD1CA8MV81 97 aa0.52□□□□□ -2.33
HMGB1P28-201ENST00000507778 DPM2O94777 84 aa0.52□□□□□ -2.33
HMGB1P28-201ENST00000507778 LY6G6CO95867 125 aa0.52□□□□□ -2.33
HMGB1P28-201ENST00000507778 IGKCP01834 107 aa0.52□□□□□ -2.33
HMGB1P28-201ENST00000507778 SLC25A5P05141 298 aaKnown RBP0.52□□□□□ -2.33
HMGB1P28-201ENST00000507778 IL7P13232 177 aa0.52□□□□□ -2.33
HMGB1P28-201ENST00000507778 PCBD1P61457 104 aa0.52□□□□□ -2.33
HMGB1P28-201ENST00000507778 RPS28P62857 69 aaKnown RBP0.52□□□□□ -2.33
HMGB1P28-201ENST00000507778 PSPHP78330 225 aa0.52□□□□□ -2.33
HMGB1P28-201ENST00000507778 SPINK13Q1W4C9 94 aa0.52□□□□□ -2.33
HMGB1P28-201ENST00000507778 LYPD5Q6UWN5 251 aa0.52□□□□□ -2.33
HMGB1P28-201ENST00000507778 DEFB132Q7Z7B7 95 aa0.52□□□□□ -2.33
HMGB1P28-201ENST00000507778 OR8I2Q8N0Y5 310 aa0.52□□□□□ -2.33
HMGB1P28-201ENST00000507778 DMAC1Q96GE9 116 aa0.52□□□□□ -2.33
HMGB1P28-201ENST00000507778 LINC00208Q96KT6 92 aa0.52□□□□□ -2.33
HMGB1P28-201ENST00000507778 GINS2Q9Y248 185 aa0.52□□□□□ -2.33
HMGB1P28-201ENST00000507778 HSPB11Q9Y547 144 aa0.52□□□□□ -2.33
HMGB1P28-201ENST00000507778 CTTNBP2Q8WZ74 1663 aa0.52□□□□□ -2.33
HMGB1P28-201ENST00000507778 PTPRDP23468 1912 aa0.52□□□□□ -2.33
HMGB1P28-201ENST00000507778 NBDYA0A0U1RRE5 68 aa0.51□□□□□ -2.33
HMGB1P28-201ENST00000507778 LOC101927531A0A1B0GV80 90 aa0.51□□□□□ -2.33
HMGB1P28-201ENST00000507778 TCRAP04437 139 aa0.51□□□□□ -2.33
HMGB1P28-201ENST00000507778 RHOHQ15669 191 aa0.51□□□□□ -2.33
HMGB1P28-201ENST00000507778 KRTAP21-1Q3LI58 79 aa0.51□□□□□ -2.33
HMGB1P28-201ENST00000507778 HSD17B12Q53GQ0 312 aa0.51□□□□□ -2.33
HMGB1P28-201ENST00000507778 KCPQ6ZWJ8 1503 aa0.51□□□□□ -2.33
HMGB1P28-201ENST00000507778 ANKRD31Q8N7Z5 1873 aa0.51□□□□□ -2.33
HMGB1P28-201ENST00000507778 A0A0G2JMM0 328 aa0.5□□□□□ -2.33
HMGB1P28-201ENST00000507778 B2MP61769 119 aa0.5□□□□□ -2.33
HMGB1P28-201ENST00000507778 ZNF56Q15929 161 aa0.5□□□□□ -2.33
HMGB1P28-201ENST00000507778 C5orf56Q8N8D9 126 aa0.5□□□□□ -2.33
HMGB1P28-201ENST00000507778 OR4S1Q8NGB4 309 aa0.5□□□□□ -2.33
HMGB1P28-201ENST00000507778 SMR3AQ99954 134 aa0.5□□□□□ -2.33
HMGB1P28-201ENST00000507778 ATG5Q9H1Y0 275 aa0.5□□□□□ -2.33
HMGB1P28-201ENST00000507778 METTL1Q9UBP6 276 aaKnown RBP0.5□□□□□ -2.33
HMGB1P28-201ENST00000507778 TRAV36DV7A0A075B6V5 113 aa0.49□□□□□ -2.33
HMGB1P28-201ENST00000507778 FXYD1O00168 92 aa0.49□□□□□ -2.33
Retrieved 100 of 20,778 RNA–protein pairs in 28.2 ms