RNA–Protein interactions for RNA: ENST00000507257.5

NUP54-205, Transcript of nucleoporin 54, humanhuman

TSL 5

Gene NUP54, Length 1,938 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-205ENST00000507257 SVIPQ8NHG7 77 aa13.66□□□□□ -0.22
NUP54-205ENST00000507257 SMIM2Q9BVW6 85 aa13.66□□□□□ -0.22
NUP54-205ENST00000507257 ONECUT1Q9UBC0 465 aa13.66□□□□□ -0.22
NUP54-205ENST00000507257 LOC400499M0QZD8 3231 aa13.66□□□□□ -0.22
NUP54-205ENST00000507257 PRAC2D3DTV9 90 aa13.66□□□□□ -0.22
NUP54-205ENST00000507257 M0R1W7 72 aa13.66□□□□□ -0.22
NUP54-205ENST00000507257 BUB3O43684 328 aa13.66□□□□□ -0.22
NUP54-205ENST00000507257 UNQ5830/PRO19650/PRO19816Q6UY13 95 aa13.66□□□□□ -0.22
NUP54-205ENST00000507257 C11orf21Q9P2W6 132 aa13.66□□□□□ -0.22
NUP54-205ENST00000507257 TMEM238LA0A1B0GVL6 79 aa13.65□□□□□ -0.22
NUP54-205ENST00000507257 A6NJY4 79 aa13.65□□□□□ -0.22
NUP54-205ENST00000507257 OOSP1A8MZH6 123 aa13.65□□□□□ -0.22
NUP54-205ENST00000507257 HOXA3O43365 443 aaPredicted RBP13.65□□□□□ -0.22
NUP54-205ENST00000507257 EBI3Q14213 229 aa13.65□□□□□ -0.22
NUP54-205ENST00000507257 AMTNQ6UX39 209 aa13.65□□□□□ -0.22
NUP54-205ENST00000507257 MTURNQ8N3F0 131 aa13.65□□□□□ -0.22
NUP54-205ENST00000507257 TOMM6Q96B49 74 aa13.65□□□□□ -0.22
NUP54-205ENST00000507257 C1QTNF4Q9BXJ3 329 aa13.65□□□□□ -0.22
NUP54-205ENST00000507257 ROS1P08922 2347 aa13.65□□□□□ -0.22
NUP54-205ENST00000507257 PPIFP30405 207 aaKnown RBP13.64□□□□□ -0.23
NUP54-205ENST00000507257 NEXN-AS1Q8NBZ9 246 aa13.64□□□□□ -0.23
NUP54-205ENST00000507257 DEFB124Q8NES8 71 aa13.64□□□□□ -0.23
NUP54-205ENST00000507257 AGPAT4-IT1Q9H0P7 198 aa13.64□□□□□ -0.23
NUP54-205ENST00000507257 ZFAND3Q9H8U3 227 aa13.64□□□□□ -0.23
NUP54-205ENST00000507257 FOXI1Q12951 378 aa13.64□□□□□ -0.23
NUP54-205ENST00000507257 KLRD1Q13241 179 aa13.64□□□□□ -0.23
NUP54-205ENST00000507257 CFAP126Q5VTH2 177 aa13.64□□□□□ -0.23
NUP54-205ENST00000507257 C9orf47Q6ZRZ4 202 aa13.64□□□□□ -0.23
NUP54-205ENST00000507257 DLX4Q92988 240 aaPredicted RBP13.64□□□□□ -0.23
NUP54-205ENST00000507257 C20orf78Q9BR46 151 aa13.64□□□□□ -0.23
NUP54-205ENST00000507257 CENPVL3A0A0U1RRI6 287 aa13.63□□□□□ -0.23
NUP54-205ENST00000507257 SPAARA0A1B0GVQ0 90 aa13.63□□□□□ -0.23
NUP54-205ENST00000507257 CKS1BP61024 79 aa13.63□□□□□ -0.23
NUP54-205ENST00000507257 PKDREJQ9NTG1 2253 aa13.63□□□□□ -0.23
NUP54-205ENST00000507257 WDFY4Q6ZS81 3184 aa13.63□□□□□ -0.23
NUP54-205ENST00000507257 APOMO95445 188 aa13.62□□□□□ -0.23
NUP54-205ENST00000507257 LGALS1P09382 135 aaKnown RBP13.62□□□□□ -0.23
NUP54-205ENST00000507257 PRTN3P24158 256 aa13.62□□□□□ -0.23
NUP54-205ENST00000507257 UBE2D1P51668 147 aa13.62□□□□□ -0.23
NUP54-205ENST00000507257 EFNA4P52798 201 aa13.62□□□□□ -0.23
NUP54-205ENST00000507257 HES1Q14469 280 aa13.62□□□□□ -0.23
NUP54-205ENST00000507257 TMEM78Q5T7P6 136 aa13.62□□□□□ -0.23
NUP54-205ENST00000507257 VCX2Q9H322 139 aa13.62□□□□□ -0.23
NUP54-205ENST00000507257 MRPL16Q9NX20 251 aaKnown RBP13.62□□□□□ -0.23
NUP54-205ENST00000507257 LENEPQ9Y5L5 61 aa13.62□□□□□ -0.23
NUP54-205ENST00000507257 TNRC18O15417 2968 aaPredicted RBP13.61□□□□□ -0.23
NUP54-205ENST00000507257 IGHV3-23P01764 117 aa13.61□□□□□ -0.23
NUP54-205ENST00000507257 CD3EP07766 207 aa13.61□□□□□ -0.23
NUP54-205ENST00000507257 LYRM7Q5U5X0 104 aa13.61□□□□□ -0.23
NUP54-205ENST00000507257 LYNX1G3V0Z9 82 aa13.6□□□□□ -0.23
NUP54-205ENST00000507257 LYNX1P0DP58 116 aa13.6□□□□□ -0.23
NUP54-205ENST00000507257 SPANXN1Q5VSR9 72 aa13.6□□□□□ -0.23
NUP54-205ENST00000507257 FAM110DQ8TAY7 271 aaPredicted RBP13.6□□□□□ -0.23
NUP54-205ENST00000507257 CYSLTR1Q9Y271 337 aa13.6□□□□□ -0.23
NUP54-205ENST00000507257 RAXQ9Y2V3 346 aa13.6□□□□□ -0.23
NUP54-205ENST00000507257 UFC1Q9Y3C8 167 aa13.6□□□□□ -0.23
NUP54-205ENST00000507257 M0R381 172 aa13.6□□□□□ -0.23
NUP54-205ENST00000507257 INSL3P51460 131 aa13.6□□□□□ -0.23
NUP54-205ENST00000507257 SCGB3A1Q96QR1 104 aa13.6□□□□□ -0.23
NUP54-205ENST00000507257 PGPEP1Q9NXJ5 209 aa13.6□□□□□ -0.23
NUP54-205ENST00000507257 TRAV8-2A0A0B4J237 113 aa13.59□□□□□ -0.23
NUP54-205ENST00000507257 TRAV26-2A0A0B4J265 109 aa13.59□□□□□ -0.23
NUP54-205ENST00000507257 SMCPP49901 116 aaPredicted RBP13.59□□□□□ -0.23
NUP54-205ENST00000507257 UBE2D3P61077 147 aa13.59□□□□□ -0.23
NUP54-205ENST00000507257 UBE2D2P62837 147 aa13.59□□□□□ -0.23
NUP54-205ENST00000507257 RNF182Q8N6D2 247 aa13.59□□□□□ -0.23
NUP54-205ENST00000507257 CDIP1Q9H305 208 aa13.59□□□□□ -0.23
NUP54-205ENST00000507257 IGHV7-81A0A0B4J1V7 117 aa13.58□□□□□ -0.23
NUP54-205ENST00000507257 COX6B1P14854 86 aa13.58□□□□□ -0.23
NUP54-205ENST00000507257 SUMO2P61956 95 aaKnown RBP13.58□□□□□ -0.23
NUP54-205ENST00000507257 MINOS1Q5TGZ0 78 aa13.58□□□□□ -0.23
NUP54-205ENST00000507257 C1orf122Q6ZSJ8 110 aa13.58□□□□□ -0.23
NUP54-205ENST00000507257 C8orf86Q6ZUL3 223 aa13.58□□□□□ -0.23
NUP54-205ENST00000507257 ZNF418Q8TF45 676 aaPredicted RBP13.58□□□□□ -0.23
NUP54-205ENST00000507257 COLQQ9Y215 455 aaPredicted RBP13.58□□□□□ -0.23
NUP54-205ENST00000507257 MINOS1-NBL1R4GNA1 71 aa13.58□□□□□ -0.23
NUP54-205ENST00000507257 CLPSL1A2RUU4 121 aa13.58□□□□□ -0.24
NUP54-205ENST00000507257 LINC01549A6NIU2 74 aa13.58□□□□□ -0.24
NUP54-205ENST00000507257 ATP5G2Q06055 141 aa13.58□□□□□ -0.24
NUP54-205ENST00000507257 MBD3L2BA0A1B0GVZ6 204 aaPredicted RBP13.57□□□□□ -0.24
NUP54-205ENST00000507257 SCGB2A2Q13296 93 aa13.57□□□□□ -0.24
NUP54-205ENST00000507257 PRADC1Q9BSG0 188 aa13.57□□□□□ -0.24
NUP54-205ENST00000507257 MSRB2Q9Y3D2 182 aa13.57□□□□□ -0.24
NUP54-205ENST00000507257 ZZEF1O43149 2961 aa13.57□□□□□ -0.24
NUP54-205ENST00000507257 MED14OSP0DP75 135 aa13.56□□□□□ -0.24
NUP54-205ENST00000507257 CRYBA4P53673 196 aa13.56□□□□□ -0.24
NUP54-205ENST00000507257 BAALCQ8WXS3 180 aa13.56□□□□□ -0.24
NUP54-205ENST00000507257 U3KQE9 123 aa13.56□□□□□ -0.24
NUP54-205ENST00000507257 PPP1R17O96001 155 aa13.56□□□□□ -0.24
NUP54-205ENST00000507257 SBSPONQ8IVN8 264 aa13.56□□□□□ -0.24
NUP54-205ENST00000507257 SYT8Q8NBV8 401 aa13.56□□□□□ -0.24
NUP54-205ENST00000507257 RASL10AQ92737 203 aa13.56□□□□□ -0.24
NUP54-205ENST00000507257 ZFHX4Q86UP3 3567 aa13.56□□□□□ -0.24
NUP54-205ENST00000507257 CD7P09564 240 aa13.55□□□□□ -0.24
NUP54-205ENST00000507257 C15orf32Q32M92 178 aa13.55□□□□□ -0.24
NUP54-205ENST00000507257 PAPPA-AS1Q5QFB9 102 aa13.55□□□□□ -0.24
NUP54-205ENST00000507257 VMO1Q7Z5L0 202 aa13.55□□□□□ -0.24
NUP54-205ENST00000507257 TRBV20-1A0A075B6N2 111 aa13.54□□□□□ -0.24
NUP54-205ENST00000507257 ZNF815PA8K554 130 aa13.54□□□□□ -0.24
NUP54-205ENST00000507257 TSPAN13O95857 204 aa13.54□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms