RNA–Protein interactions for RNA: ENST00000502850.5

NUP54-202, Transcript of nucleoporin 54, humanhuman

TSL 1 (best)

Gene NUP54, Length 1,604 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-202ENST00000502850 CSN3P07498 182 aa9.2□□□□□ -0.94
NUP54-202ENST00000502850 PPIFP30405 207 aaKnown RBP9.2□□□□□ -0.94
NUP54-202ENST00000502850 ZNF80P51504 273 aaPredicted RBP9.2□□□□□ -0.94
NUP54-202ENST00000502850 IGFL4Q6B9Z1 124 aa9.2□□□□□ -0.94
NUP54-202ENST00000502850 SPATA12Q7Z6I5 190 aa9.2□□□□□ -0.94
NUP54-202ENST00000502850 RNF182Q8N6D2 247 aa9.2□□□□□ -0.94
NUP54-202ENST00000502850 MRPS16Q9Y3D3 137 aaKnown RBP9.2□□□□□ -0.94
NUP54-202ENST00000502850 F8P00451 2351 aa9.2□□□□□ -0.94
NUP54-202ENST00000502850 IGHV3-66A0A0C4DH42 116 aa9.19□□□□□ -0.94
NUP54-202ENST00000502850 TMEM213A2RRL7 107 aa9.19□□□□□ -0.94
NUP54-202ENST00000502850 PRAC2D3DTV9 90 aa9.19□□□□□ -0.94
NUP54-202ENST00000502850 OVOL1O14753 267 aa9.19□□□□□ -0.94
NUP54-202ENST00000502850 CKS2P33552 79 aa9.19□□□□□ -0.94
NUP54-202ENST00000502850 ERCC8Q13216 396 aa9.19□□□□□ -0.94
NUP54-202ENST00000502850 MRPL51Q4U2R6 128 aaKnown RBP9.19□□□□□ -0.94
NUP54-202ENST00000502850 IL17RELQ6ZVW7 336 aa9.19□□□□□ -0.94
NUP54-202ENST00000502850 SMIM15Q7Z3B0 74 aa9.19□□□□□ -0.94
NUP54-202ENST00000502850 AMN1Q8IY45 258 aa9.19□□□□□ -0.94
NUP54-202ENST00000502850 AGPAT4-IT1Q9H0P7 198 aa9.19□□□□□ -0.94
NUP54-202ENST00000502850 TEP1Q99973 2627 aaKnown RBP9.18□□□□□ -0.94
NUP54-202ENST00000502850 CACNG7P62955 275 aa9.18□□□□□ -0.94
NUP54-202ENST00000502850 LY6EQ16553 131 aa9.18□□□□□ -0.94
NUP54-202ENST00000502850 COL5A1-AS1Q5SY13 56 aa9.18□□□□□ -0.94
NUP54-202ENST00000502850 LINC01356Q8N9X3 169 aa9.18□□□□□ -0.94
NUP54-202ENST00000502850 LINC00477Q96M19 166 aa9.18□□□□□ -0.94
NUP54-202ENST00000502850 NPFFR1Q9GZQ6 430 aa9.18□□□□□ -0.94
NUP54-202ENST00000502850 MS4A6AQ9H2W1 248 aa9.18□□□□□ -0.94
NUP54-202ENST00000502850 AKAP6Q13023 2319 aa9.17□□□□□ -0.94
NUP54-202ENST00000502850 TMEM89A2RUT3 159 aa9.17□□□□□ -0.94
NUP54-202ENST00000502850 ZNF207O43670 478 aaKnown RBP9.17□□□□□ -0.94
NUP54-202ENST00000502850 PF4V1P10720 104 aa9.17□□□□□ -0.94
NUP54-202ENST00000502850 LINC01545Q5VT33 79 aa9.17□□□□□ -0.94
NUP54-202ENST00000502850 ATOH7Q8N100 152 aa9.17□□□□□ -0.94
NUP54-202ENST00000502850 ZNF738Q8NE65 137 aa9.17□□□□□ -0.94
NUP54-202ENST00000502850 OR10J6PQ8NGY7 276 aa9.17□□□□□ -0.94
NUP54-202ENST00000502850 NRGNQ92686 78 aa9.17□□□□□ -0.94
NUP54-202ENST00000502850 MAP1LC3AQ9H492 121 aa9.17□□□□□ -0.94
NUP54-202ENST00000502850 SIGLEC8Q9NYZ4 499 aa9.17□□□□□ -0.94
NUP54-202ENST00000502850 CSMD2Q7Z408 3487 aa9.17□□□□□ -0.94
NUP54-202ENST00000502850 TRBV7-9A0A0J9YWB2 115 aa9.16□□□□□ -0.94
NUP54-202ENST00000502850 TCAPO15273 167 aa9.16□□□□□ -0.94
NUP54-202ENST00000502850 IGLV1-40P01703 118 aa9.16□□□□□ -0.94
NUP54-202ENST00000502850 HBDP02042 147 aa9.16□□□□□ -0.94
NUP54-202ENST00000502850 PRR31Q5SQ13 230 aa9.16□□□□□ -0.94
NUP54-202ENST00000502850 LINC00527Q9UJ94 153 aa9.16□□□□□ -0.94
NUP54-202ENST00000502850 CSMD1Q96PZ7 3565 aa9.16□□□□□ -0.94
NUP54-202ENST00000502850 IGHV3OR16-13A0A075B7E8 117 aa9.16□□□□□ -0.94
NUP54-202ENST00000502850 IGHV3-49A0A0A0MS15 119 aa9.16□□□□□ -0.94
NUP54-202ENST00000502850 IGHV3-74A0A0B4J1X5 117 aa9.16□□□□□ -0.94
NUP54-202ENST00000502850 TCF21O43680 179 aa9.16□□□□□ -0.94
NUP54-202ENST00000502850 PRB4P10163 310 aaPredicted RBP9.16□□□□□ -0.94
NUP54-202ENST00000502850 IGLL1P15814 213 aa9.16□□□□□ -0.94
NUP54-202ENST00000502850 TSPOP30536 169 aa9.16□□□□□ -0.94
NUP54-202ENST00000502850 IFI27P40305 119 aaPredicted RBP9.16□□□□□ -0.94
NUP54-202ENST00000502850 OR4X2Q8NGF9 303 aa9.16□□□□□ -0.94
NUP54-202ENST00000502850 ZNF747Q9BV97 191 aa9.16□□□□□ -0.94
NUP54-202ENST00000502850 NXT2Q9NPJ8 142 aaKnown RBP9.16□□□□□ -0.94
NUP54-202ENST00000502850 K7EMT4 169 aa9.15□□□□□ -0.94
NUP54-202ENST00000502850 CFHR3Q02985 330 aa9.15□□□□□ -0.94
NUP54-202ENST00000502850 DPF1Q92782 380 aa9.15□□□□□ -0.94
NUP54-202ENST00000502850 DAZ1Q9NQZ3 744 aaKnown RBP9.15□□□□□ -0.94
NUP54-202ENST00000502850 PRRC2AP48634 2157 aaKnown RBP9.15□□□□□ -0.94
NUP54-202ENST00000502850 HIVEP1P15822 2718 aa9.14□□□□□ -0.95
NUP54-202ENST00000502850 IGHV4-4A0A075B6R2 117 aa9.14□□□□□ -0.95
NUP54-202ENST00000502850 IGHV7-4-1A0A0J9YVY3 117 aa9.14□□□□□ -0.95
NUP54-202ENST00000502850 LINC01546A6NGU7 62 aa9.14□□□□□ -0.95
NUP54-202ENST00000502850 PSMG4Q5JS54 123 aa9.14□□□□□ -0.95
NUP54-202ENST00000502850 LINC00173Q6ZV60 143 aa9.14□□□□□ -0.95
NUP54-202ENST00000502850 PMCHL2Q9BQD1 86 aa9.14□□□□□ -0.95
NUP54-202ENST00000502850 CELSR1Q9NYQ6 3014 aa9.13□□□□□ -0.95
NUP54-202ENST00000502850 TRAV21A0A0B4J279 112 aa9.13□□□□□ -0.95
NUP54-202ENST00000502850 IGKV3D-20A0A0C4DH25 116 aa9.13□□□□□ -0.95
NUP54-202ENST00000502850 LOC389332A0A1B0GUA5 103 aa9.13□□□□□ -0.95
NUP54-202ENST00000502850 SOCS3O14543 225 aa9.13□□□□□ -0.95
NUP54-202ENST00000502850 SNAI2O43623 268 aa9.13□□□□□ -0.95
NUP54-202ENST00000502850 BATFQ16520 125 aa9.13□□□□□ -0.95
NUP54-202ENST00000502850 LGALS9BQ3B8N2 356 aa9.13□□□□□ -0.95
NUP54-202ENST00000502850 FAM106AQ4KMX7 169 aa9.13□□□□□ -0.95
NUP54-202ENST00000502850 LGALS9CQ6DKI2 356 aa9.13□□□□□ -0.95
NUP54-202ENST00000502850 SLC25A34Q6PIV7 304 aa9.13□□□□□ -0.95
NUP54-202ENST00000502850 UNQ9165/PRO28630Q6UXU0 137 aa9.13□□□□□ -0.95
NUP54-202ENST00000502850 PEF1Q9UBV8 284 aaKnown RBP9.13□□□□□ -0.95
NUP54-202ENST00000502850 NPYP01303 97 aa9.13□□□□□ -0.95
NUP54-202ENST00000502850 MED14OSP0DP75 135 aa9.13□□□□□ -0.95
NUP54-202ENST00000502850 ID1P41134 155 aa9.13□□□□□ -0.95
NUP54-202ENST00000502850 BLCAPP62952 87 aa9.13□□□□□ -0.95
NUP54-202ENST00000502850 MAJINQ3KP22 176 aa9.13□□□□□ -0.95
NUP54-202ENST00000502850 RNF185Q96GF1 192 aa9.13□□□□□ -0.95
NUP54-202ENST00000502850 FOXC2Q99958 501 aa9.13□□□□□ -0.95
NUP54-202ENST00000502850 UFC1Q9Y3C8 167 aa9.13□□□□□ -0.95
NUP54-202ENST00000502850 SMAD7O15105 426 aaKnown RBP9.12□□□□□ -0.95
NUP54-202ENST00000502850 TRBV12-3P01733 135 aa9.12□□□□□ -0.95
NUP54-202ENST00000502850 IGHV3-11P01762 117 aa9.12□□□□□ -0.95
NUP54-202ENST00000502850 RIPPLY3P57055 190 aa9.12□□□□□ -0.95
NUP54-202ENST00000502850 FOXE3Q13461 319 aa9.12□□□□□ -0.95
NUP54-202ENST00000502850 SPANXN1Q5VSR9 72 aa9.12□□□□□ -0.95
NUP54-202ENST00000502850 ZNF575Q86XF7 245 aa9.12□□□□□ -0.95
NUP54-202ENST00000502850 TIMM8BQ9Y5J9 83 aaPredicted RBP9.12□□□□□ -0.95
NUP54-202ENST00000502850 MUC21A0A0G2JKD1 596 aa9.11□□□□□ -0.95
NUP54-202ENST00000502850 MUC21A0A140T8X8 626 aa9.11□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 112.4 ms