RNA–Protein interactions for RNA: ENST00000489180.6

NPHP4-209, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 5,548 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-209ENST00000489180 LTAP01374 205 aa13.96□□□□□ -0.18
NPHP4-209ENST00000489180 PRR20EP86478 221 aa13.96□□□□□ -0.18
NPHP4-209ENST00000489180 PRR20CP86479 221 aa13.96□□□□□ -0.18
NPHP4-209ENST00000489180 PRR20DP86480 221 aa13.96□□□□□ -0.18
NPHP4-209ENST00000489180 PRR20BP86481 221 aa13.96□□□□□ -0.18
NPHP4-209ENST00000489180 PRR20AP86496 221 aa13.96□□□□□ -0.18
NPHP4-209ENST00000489180 AMTNQ6UX39 209 aa13.96□□□□□ -0.18
NPHP4-209ENST00000489180 SMIM2Q9BVW6 85 aa13.96□□□□□ -0.18
NPHP4-209ENST00000489180 SPRY2O43597 315 aa13.95□□□□□ -0.18
NPHP4-209ENST00000489180 CDK2AP2O75956 126 aa13.95□□□□□ -0.18
NPHP4-209ENST00000489180 TRBV20-1A0A075B6N2 111 aa13.95□□□□□ -0.18
NPHP4-209ENST00000489180 RHODO00212 210 aa13.95□□□□□ -0.18
NPHP4-209ENST00000489180 IGLV1-44P01699 117 aa13.95□□□□□ -0.18
NPHP4-209ENST00000489180 CDKN1BP46527 198 aa13.95□□□□□ -0.18
NPHP4-209ENST00000489180 PPDPFLQ8WWR9 84 aa13.95□□□□□ -0.18
NPHP4-209ENST00000489180 TSC2P49815 1807 aa13.95□□□□□ -0.18
NPHP4-209ENST00000489180 NDUFA4O00483 81 aa13.95□□□□□ -0.18
NPHP4-209ENST00000489180 TCTEX1D4Q5JR98 221 aa13.95□□□□□ -0.18
NPHP4-209ENST00000489180 PKDREJQ9NTG1 2253 aa13.95□□□□□ -0.18
NPHP4-209ENST00000489180 F5H768 121 aa13.95□□□□□ -0.18
NPHP4-209ENST00000489180 F8W1H4 67 aa13.95□□□□□ -0.18
NPHP4-209ENST00000489180 SOCS3O14543 225 aa13.95□□□□□ -0.18
NPHP4-209ENST00000489180 DIDO1Q9BTC0 2240 aaKnown RBP13.94□□□□□ -0.18
NPHP4-209ENST00000489180 COL6A6A6NMZ7 2263 aa13.94□□□□□ -0.18
NPHP4-209ENST00000489180 OR11H6Q8NGC7 330 aa13.94□□□□□ -0.18
NPHP4-209ENST00000489180 F6UB75 175 aa13.94□□□□□ -0.18
NPHP4-209ENST00000489180 ZNF407Q9C0G0 2248 aa13.93□□□□□ -0.18
NPHP4-209ENST00000489180 CEACAM8P31997 349 aaPredicted RBP13.93□□□□□ -0.18
NPHP4-209ENST00000489180 ZNF491Q8N8L2 437 aa13.93□□□□□ -0.18
NPHP4-209ENST00000489180 A0A096LPF7 62 aa13.93□□□□□ -0.18
NPHP4-209ENST00000489180 F8VRH5 84 aa13.93□□□□□ -0.18
NPHP4-209ENST00000489180 SPRNQ5BIV9 151 aa13.93□□□□□ -0.18
NPHP4-209ENST00000489180 DYNAPQ8N1N2 210 aa13.93□□□□□ -0.18
NPHP4-209ENST00000489180 ARFGEF3Q5TH69 2177 aa13.93□□□□□ -0.18
NPHP4-209ENST00000489180 PRO1854Q9UHT4 67 aa13.92□□□□□ -0.18
NPHP4-209ENST00000489180 K7EM74 188 aa13.92□□□□□ -0.18
NPHP4-209ENST00000489180 FAM215AQ9Y5M1 114 aa13.92□□□□□ -0.18
NPHP4-209ENST00000489180 NLRC5Q86WI3 1866 aa13.92□□□□□ -0.18
NPHP4-209ENST00000489180 WDR81Q562E7 1941 aa13.92□□□□□ -0.18
NPHP4-209ENST00000489180 GNRH2O43555 120 aa13.92□□□□□ -0.18
NPHP4-209ENST00000489180 LYPD6BQ8NI32 183 aa13.92□□□□□ -0.18
NPHP4-209ENST00000489180 K7ENP7 123 aa13.92□□□□□ -0.18
NPHP4-209ENST00000489180 SP5Q6BEB4 398 aaPredicted RBP13.92□□□□□ -0.18
NPHP4-209ENST00000489180 CFHR4Q92496 578 aa13.92□□□□□ -0.18
NPHP4-209ENST00000489180 ACACAQ13085 2346 aa13.91□□□□□ -0.18
NPHP4-209ENST00000489180 ZNF561-AS1K7EIQ3 104 aa13.91□□□□□ -0.18
NPHP4-209ENST00000489180 EGR2P11161 476 aaPredicted RBP13.91□□□□□ -0.18
NPHP4-209ENST00000489180 FOXE3Q13461 319 aa13.91□□□□□ -0.18
NPHP4-209ENST00000489180 PLXNA2O75051 1894 aa13.91□□□□□ -0.18
NPHP4-209ENST00000489180 DOCK7Q96N67 2140 aa13.91□□□□□ -0.18
NPHP4-209ENST00000489180 J3QQQ9 107 aa13.91□□□□□ -0.18
NPHP4-209ENST00000489180 DAD1P61803 113 aa13.91□□□□□ -0.18
NPHP4-209ENST00000489180 SSC4DQ8WTU2 575 aa13.91□□□□□ -0.18
NPHP4-209ENST00000489180 TMEM243Q9BU79 118 aa13.91□□□□□ -0.18
NPHP4-209ENST00000489180 KLF2Q9Y5W3 355 aaPredicted RBP13.91□□□□□ -0.18
NPHP4-209ENST00000489180 GATA1P15976 413 aaPredicted RBP13.9□□□□□ -0.18
NPHP4-209ENST00000489180 FGF23Q9GZV9 251 aaPredicted RBP13.9□□□□□ -0.18
NPHP4-209ENST00000489180 CARD19Q96LW7 228 aa13.9□□□□□ -0.18
NPHP4-209ENST00000489180 ABCA1O95477 2261 aa13.9□□□□□ -0.18
NPHP4-209ENST00000489180 CLPSL2Q6UWE3 100 aa13.89□□□□□ -0.19
NPHP4-209ENST00000489180 PCP2Q8IVA1 136 aa13.89□□□□□ -0.19
NPHP4-209ENST00000489180 C11orf53Q8IXP5 236 aa13.89□□□□□ -0.19
NPHP4-209ENST00000489180 MGAMO43451 1857 aa13.89□□□□□ -0.19
NPHP4-209ENST00000489180 INAFM2P0DMQ5 153 aa13.89□□□□□ -0.19
NPHP4-209ENST00000489180 RNF114Q9Y508 228 aa13.89□□□□□ -0.19
NPHP4-209ENST00000489180 Q96MF0 132 aa13.89□□□□□ -0.19
NPHP4-209ENST00000489180 IGHV7-4-1A0A0J9YVY3 117 aa13.89□□□□□ -0.19
NPHP4-209ENST00000489180 IGLC7A0M8Q6 106 aa13.89□□□□□ -0.19
NPHP4-209ENST00000489180 USF3Q68DE3 2245 aa13.89□□□□□ -0.19
NPHP4-209ENST00000489180 GAGE12HA6NDE8 117 aa13.89□□□□□ -0.19
NPHP4-209ENST00000489180 NUPR1O60356 82 aa13.89□□□□□ -0.19
NPHP4-209ENST00000489180 C12orf74Q32Q52 190 aa13.89□□□□□ -0.19
NPHP4-209ENST00000489180 ZNF747Q9BV97 191 aa13.89□□□□□ -0.19
NPHP4-209ENST00000489180 PLA2G2EQ9NZK7 142 aa13.89□□□□□ -0.19
NPHP4-209ENST00000489180 CCL25O15444 150 aa13.88□□□□□ -0.19
NPHP4-209ENST00000489180 IGFL3Q6UXB1 125 aa13.88□□□□□ -0.19
NPHP4-209ENST00000489180 CTSZQ9UBR2 303 aa13.88□□□□□ -0.19
NPHP4-209ENST00000489180 PYGO2Q9BRQ0 406 aa13.88□□□□□ -0.19
NPHP4-209ENST00000489180 HAMPP81172 84 aa13.87□□□□□ -0.19
NPHP4-209ENST00000489180 ATP6V0BQ99437 205 aa13.87□□□□□ -0.19
NPHP4-209ENST00000489180 GATA3P23771 443 aa13.87□□□□□ -0.19
NPHP4-209ENST00000489180 TRAV12-1A0A0B4J245 112 aa13.87□□□□□ -0.19
NPHP4-209ENST00000489180 SCRT2Q9NQ03 307 aa13.87□□□□□ -0.19
NPHP4-209ENST00000489180 RIF1Q5UIP0 2472 aaKnown RBP13.87□□□□□ -0.19
NPHP4-209ENST00000489180 PRSS29PA6NIE9 313 aa13.86□□□□□ -0.19
NPHP4-209ENST00000489180 C22orf46C9J442 243 aa13.86□□□□□ -0.19
NPHP4-209ENST00000489180 KLF5Q13887 457 aaPredicted RBP13.86□□□□□ -0.19
NPHP4-209ENST00000489180 AGPAT4-IT1Q9H0P7 198 aa13.86□□□□□ -0.19
NPHP4-209ENST00000489180 TRAV25A0A0B4J276 109 aa13.86□□□□□ -0.19
NPHP4-209ENST00000489180 TINCRA0A1B0GVN0 87 aa13.86□□□□□ -0.19
NPHP4-209ENST00000489180 SUMO4Q6EEV6 95 aa13.86□□□□□ -0.19
NPHP4-209ENST00000489180 RS1O15537 224 aa13.86□□□□□ -0.19
NPHP4-209ENST00000489180 POU2AF1Q16633 256 aa13.86□□□□□ -0.19
NPHP4-209ENST00000489180 LINC00173Q6ZV60 143 aa13.86□□□□□ -0.19
NPHP4-209ENST00000489180 CRLF1O75462 422 aa13.86□□□□□ -0.19
NPHP4-209ENST00000489180 C20orf78Q9BR46 151 aa13.86□□□□□ -0.19
NPHP4-209ENST00000489180 IFITM1P13164 125 aa13.85□□□□□ -0.19
NPHP4-209ENST00000489180 RITA1Q96K30 269 aa13.85□□□□□ -0.19
NPHP4-209ENST00000489180 HOXB4P17483 251 aaPredicted RBP13.85□□□□□ -0.19
NPHP4-209ENST00000489180 TAL2Q16559 108 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 83 ms