RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 BSPH1Q075Z2 132 aa1.71□□□□□ -2.14
VPS41-213ENST00000485955 ZNF141Q15928 474 aa1.71□□□□□ -2.14
VPS41-213ENST00000485955 KRTAP6-3Q3LI67 103 aa1.71□□□□□ -2.14
VPS41-213ENST00000485955 SP6Q3SY56 376 aa1.71□□□□□ -2.14
VPS41-213ENST00000485955 LUZP6Q538Z0 58 aa1.71□□□□□ -2.14
VPS41-213ENST00000485955 RNASE13Q5GAN3 156 aaKnown RBP1.71□□□□□ -2.14
VPS41-213ENST00000485955 NCMAPQ5T1S8 102 aa1.71□□□□□ -2.14
VPS41-213ENST00000485955 BCL2L15Q5TBC7 163 aa1.71□□□□□ -2.14
VPS41-213ENST00000485955 RPL22L1Q6P5R6 122 aaKnown RBP1.71□□□□□ -2.14
VPS41-213ENST00000485955 MSRB3Q8IXL7 192 aa1.71□□□□□ -2.14
VPS41-213ENST00000485955 IFT20Q8IY31 132 aa1.71□□□□□ -2.14
VPS41-213ENST00000485955 TMEM256Q8N2U0 113 aa1.71□□□□□ -2.14
VPS41-213ENST00000485955 RPP25LQ8N5L8 163 aaKnown RBP1.71□□□□□ -2.14
VPS41-213ENST00000485955 OR4S1Q8NGB4 309 aa1.71□□□□□ -2.14
VPS41-213ENST00000485955 OR2T10Q8NGZ9 312 aa1.71□□□□□ -2.14
VPS41-213ENST00000485955 PPTC7Q8NI37 304 aa1.71□□□□□ -2.14
VPS41-213ENST00000485955 DCANP1Q8TF63 244 aa1.71□□□□□ -2.14
VPS41-213ENST00000485955 RNASE6Q93091 150 aaKnown RBP1.71□□□□□ -2.14
VPS41-213ENST00000485955 MAGOHBQ96A72 148 aaKnown RBP1.71□□□□□ -2.14
VPS41-213ENST00000485955 TEX37Q96LM6 180 aa1.71□□□□□ -2.14
VPS41-213ENST00000485955 B9D2Q9BPU9 175 aa1.71□□□□□ -2.14
VPS41-213ENST00000485955 SHANK2-AS3Q9BTD1 123 aa1.71□□□□□ -2.14
VPS41-213ENST00000485955 TSSK6Q9BXA6 273 aa1.71□□□□□ -2.14
VPS41-213ENST00000485955 TCEAL2Q9H3H9 227 aaPredicted RBP1.71□□□□□ -2.14
VPS41-213ENST00000485955 TUBA4BQ9H853 241 aa1.71□□□□□ -2.14
VPS41-213ENST00000485955 CBLN4Q9NTU7 201 aa1.71□□□□□ -2.14
VPS41-213ENST00000485955 SCN3BQ9NY72 215 aa1.71□□□□□ -2.14
VPS41-213ENST00000485955 BOKQ9UMX3 212 aaPredicted RBP1.71□□□□□ -2.14
VPS41-213ENST00000485955 FUT9Q9Y231 359 aa1.71□□□□□ -2.14
VPS41-213ENST00000485955 TMEM14AQ9Y6G1 99 aa1.71□□□□□ -2.14
VPS41-213ENST00000485955 DOCK5Q9H7D0 1870 aa1.71□□□□□ -2.14
VPS41-213ENST00000485955 NUP205Q92621 2012 aa1.71□□□□□ -2.14
VPS41-213ENST00000485955 VWFP04275 2813 aa1.71□□□□□ -2.14
VPS41-213ENST00000485955 CHD5Q8TDI0 1954 aa1.7□□□□□ -2.14
VPS41-213ENST00000485955 GOLGA4Q13439 2230 aaKnown RBP1.7□□□□□ -2.14
VPS41-213ENST00000485955 IGHV3OR15-7A0A075B7D8 119 aa1.7□□□□□ -2.14
VPS41-213ENST00000485955 TRAV30A0A087WSZ9 112 aa1.7□□□□□ -2.14
VPS41-213ENST00000485955 LOC100130705A0A1B0GUX0 176 aa1.7□□□□□ -2.14
VPS41-213ENST00000485955 A0A1B0GW54 56 aa1.7□□□□□ -2.14
VPS41-213ENST00000485955 ODAMA1E959 279 aa1.7□□□□□ -2.14
VPS41-213ENST00000485955 ZNF860A6NHJ4 632 aa1.7□□□□□ -2.14
VPS41-213ENST00000485955 IFITM5A6NNB3 132 aa1.7□□□□□ -2.14
VPS41-213ENST00000485955 BUB1B-PAK6H3BSN5 160 aa1.7□□□□□ -2.14
VPS41-213ENST00000485955 TMEM256-PLSCR3K7ERE1 68 aa1.7□□□□□ -2.14
VPS41-213ENST00000485955 M0R378 163 aa1.7□□□□□ -2.14
VPS41-213ENST00000485955 CCL25O15444 150 aa1.7□□□□□ -2.14
VPS41-213ENST00000485955 OR2T1O43869 369 aa1.7□□□□□ -2.14
VPS41-213ENST00000485955 CST7O76096 145 aa1.7□□□□□ -2.14
VPS41-213ENST00000485955 AKAIN1P0CW23 69 aa1.7□□□□□ -2.14
VPS41-213ENST00000485955 IGHV1-8P0DP01 117 aa1.7□□□□□ -2.14
VPS41-213ENST00000485955 HLA-EP13747 358 aa1.7□□□□□ -2.14
VPS41-213ENST00000485955 LGALS3P17931 250 aaKnown RBP1.7□□□□□ -2.14
VPS41-213ENST00000485955 S100A4P26447 101 aaKnown RBP1.7□□□□□ -2.14
VPS41-213ENST00000485955 PSMB8P28062 276 aa1.7□□□□□ -2.14
VPS41-213ENST00000485955 ZNF80P51504 273 aaPredicted RBP1.7□□□□□ -2.14
VPS41-213ENST00000485955 NDUFA6P56556 154 aa1.7□□□□□ -2.14
VPS41-213ENST00000485955 UBE2BP63146 152 aa1.7□□□□□ -2.14
VPS41-213ENST00000485955 CCL20P78556 96 aa1.7□□□□□ -2.14
VPS41-213ENST00000485955 DEFB103AP81534 67 aa1.7□□□□□ -2.14
VPS41-213ENST00000485955 RHOGP84095 191 aa1.7□□□□□ -2.14
VPS41-213ENST00000485955 AADACL3Q5VUY0 350 aa1.7□□□□□ -2.14
VPS41-213ENST00000485955 TMEM244Q5VVB8 128 aa1.7□□□□□ -2.14
VPS41-213ENST00000485955 SSX8Q7RTT4 187 aa1.7□□□□□ -2.14
VPS41-213ENST00000485955 TRAPPC6BQ86SZ2 158 aa1.7□□□□□ -2.14
VPS41-213ENST00000485955 MMGT1Q8N4V1 131 aa1.7□□□□□ -2.14
VPS41-213ENST00000485955 OR5C1Q8NGR4 320 aa1.7□□□□□ -2.14
VPS41-213ENST00000485955 BRK1Q8WUW1 75 aa1.7□□□□□ -2.14
VPS41-213ENST00000485955 PP6455Q8WZ26 134 aa1.7□□□□□ -2.14
VPS41-213ENST00000485955 ZC2HC1AQ96GY0 325 aa1.7□□□□□ -2.14
VPS41-213ENST00000485955 DERL1Q9BUN8 251 aa1.7□□□□□ -2.14
VPS41-213ENST00000485955 C1QTNF6Q9BXI9 259 aa1.7□□□□□ -2.14
VPS41-213ENST00000485955 NKX6-2Q9C056 277 aaPredicted RBP1.7□□□□□ -2.14
VPS41-213ENST00000485955 TMEM191AQ9H0A3 160 aa1.7□□□□□ -2.14
VPS41-213ENST00000485955 ZNF106Q9H2Y7 1883 aaKnown RBP1.7□□□□□ -2.14
VPS41-213ENST00000485955 BANF2Q9H503 90 aa1.7□□□□□ -2.14
VPS41-213ENST00000485955 IL36BQ9NZH7 164 aa1.7□□□□□ -2.14
VPS41-213ENST00000485955 KLK5Q9Y337 293 aaPredicted RBP1.7□□□□□ -2.14
VPS41-213ENST00000485955 TNRC6BQ9UPQ9 1833 aaKnown RBP1.7□□□□□ -2.14
VPS41-213ENST00000485955 HELZP42694 1942 aaKnown RBP1.7□□□□□ -2.14
VPS41-213ENST00000485955 LOXHD1Q8IVV2 1947 aa1.7□□□□□ -2.14
VPS41-213ENST00000485955 NUP210Q8TEM1 1887 aaPredicted RBP1.69□□□□□ -2.14
VPS41-213ENST00000485955 MXRA5Q9NR99 2828 aa1.69□□□□□ -2.14
VPS41-213ENST00000485955 IGKV3D-11A0A0A0MRZ8 115 aa1.69□□□□□ -2.14
VPS41-213ENST00000485955 IGHV3-49A0A0A0MS15 119 aa1.69□□□□□ -2.14
VPS41-213ENST00000485955 IGHV1-58A0A0C4DH39 117 aa1.69□□□□□ -2.14
VPS41-213ENST00000485955 IGKV1-9A0A0C4DH69 117 aa1.69□□□□□ -2.14
VPS41-213ENST00000485955 BBIP1A8MTZ0 92 aa1.69□□□□□ -2.14
VPS41-213ENST00000485955 BPY2O14599 106 aa1.69□□□□□ -2.14
VPS41-213ENST00000485955 SNAPC5O75971 98 aa1.69□□□□□ -2.14
VPS41-213ENST00000485955 NAPSAO96009 420 aa1.69□□□□□ -2.14
VPS41-213ENST00000485955 IGLV3-25P01717 112 aa1.69□□□□□ -2.14
VPS41-213ENST00000485955 HLA-DQA1P01909 254 aa1.69□□□□□ -2.14
VPS41-213ENST00000485955 APCSP02743 223 aa1.69□□□□□ -2.14
VPS41-213ENST00000485955 PRM2P04554 102 aa1.69□□□□□ -2.14
VPS41-213ENST00000485955 FABP2P12104 132 aa1.69□□□□□ -2.14
VPS41-213ENST00000485955 HIST1H1BP16401 226 aaKnown RBP1.69□□□□□ -2.14
VPS41-213ENST00000485955 CRYGSP22914 178 aa1.69□□□□□ -2.14
VPS41-213ENST00000485955 RPL22P35268 128 aaKnown RBP1.69□□□□□ -2.14
VPS41-213ENST00000485955 YPEL3P61236 119 aaPredicted RBP1.69□□□□□ -2.14
VPS41-213ENST00000485955 PLGLB1Q02325 96 aa1.69□□□□□ -2.14
Retrieved 100 of 20,778 RNA–protein pairs in 43.8 ms